Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402020789 Solanum tuberosum HOM05D000009 ORTHO05D000008 1.9e-26 121.7 60 100.0
CAN.G1887.7 Capsicum annuum HOM05D000009 ORTHO05D000008 3.1e-16 87.8 54 79.6
CAN.G309.34 Capsicum annuum HOM05D000009 ORTHO05D000008 3.1e-16 87.8 54 81.5
CAN.G1887.5 Capsicum annuum HOM05D000009 ORTHO05D000008 1.2e-15 85.9 54 79.6
Solyc08g007630.1 Solanum lycopersicum HOM05D000009 ORTHO05D000008 3.4e-15 84.3 55 78.2
PGSC0003DMG400019669 Solanum tuberosum HOM05D000009 ORTHO05D000008 7.5e-15 83.2 54 77.8
PGSC0003DMG400027377 Solanum tuberosum HOM05D000009 ORTHO05D000008 7.5e-15 83.2 55 72.7
Sopen11g028330 Solanum pennellii HOM05D000009 ORTHO05D000008 9.8e-15 82.8 52 80.8
PGSC0003DMG400009455 Solanum tuberosum HOM05D000009 ORTHO05D000008 1.3e-14 82.4 55 76.4
PGSC0003DMG400002980 Solanum tuberosum HOM05D000009 ORTHO05D000008 1.7e-14 82.0 55 78.2
Sopen11g028610 Solanum pennellii HOM05D000009 ORTHO05D000008 3.7e-14 80.9 53 75.5
CAN.G1358.3 Capsicum annuum HOM05D000009 ORTHO05D000008 4.9e-14 80.5 55 76.4
CAN.G309.9 Capsicum annuum HOM05D000009 ORTHO05D000008 8.3e-14 79.7 55 76.4
PGSC0003DMG402030236 Solanum tuberosum HOM05D000009 ORTHO05D000008 8.3e-14 79.7 52 75.0
Nitab4.5_0002914g0120 Nicotiana tabacum HOM05D000009 ORTHO05D000008 1.1e-13 79.3 53 73.6
CAN.G1848.4 Capsicum annuum HOM05D000009 ORTHO05D000008 1.9e-13 78.6 55 76.4
CAN.G309.45 Capsicum annuum HOM05D000009 ORTHO05D000008 1.9e-13 78.6 46 80.4
CAN.G742.21 Capsicum annuum HOM05D000009 ORTHO05D000008 3.2e-13 77.8 55 72.7
Solyc11g071430.1 Solanum lycopersicum HOM05D000009 ORTHO05D000008 3.2e-13 77.8 54 75.9
CAN.G1524.14 Capsicum annuum HOM05D000009 ORTHO05D000008 7.1e-13 76.6 55 72.7
Peaxi162Scf00637g00221 Petunia axillaris HOM05D000009 ORTHO05D000008 2.1e-12 75.1 48 81.2
CAN.G1848.5 Capsicum annuum HOM05D000009 ORTHO05D000008 2.7e-12 74.7 52 76.9
CAN.G525.34 Capsicum annuum HOM05D000009 ORTHO05D000008 4.6e-12 73.9 55 72.7
Peaxi162Scf00757g00423 Petunia axillaris HOM05D000009 ORTHO05D000008 6.6e-11 70.1 54 68.5
Peaxi162Scf00757g00425 Petunia axillaris HOM05D000009 ORTHO05D000008 6.6e-11 70.1 54 68.5
CAN.G742.13 Capsicum annuum HOM05D000009 ORTHO05D000008 1.9e-10 68.6 43 79.1
Peaxi162Scf00637g00219 Petunia axillaris HOM05D000009 ORTHO05D000008 1.9e-10 68.6 54 66.7
PGSC0003DMG402018576 Solanum tuberosum HOM05D000009 ORTHO05D000008 9.5e-10 66.2 43 76.7
VMungo1080G1599 Vigna mungo HOM05D000009 ORTHO05D000008 2.8e-09 64.7 55 60.0
PGSC0003DMG400040620 Solanum tuberosum HOM05D000009 ORTHO05D000008 1.1e-08 62.8 55 61.8
PGSC0003DMG400013721 Solanum tuberosum HOM05D000009 ORTHO05D000008 1.4e-08 62.4 49 63.3
Solyc11g043070.3 Solanum lycopersicum HOM05D000009 ORTHO05D000008 1.8e-08 62.0 53 64.2
Sopen03g021050 Solanum pennellii HOM05D000009 ORTHO05D000008 1.8e-08 62.0 51 58.8
Solyc03g078300.3 Solanum lycopersicum HOM05D000009 ORTHO05D000008 3.1e-08 61.2 51 56.9
Nitab4.5_0014415g0020 Nicotiana tabacum HOM05D000009 ORTHO05D000008 4.0e-08 60.8 46 60.9
Peaxi162Scf00071g00945 Petunia axillaris HOM05D000009 ORTHO05D000008 4.0e-08 60.8 51 56.9
Medtr3g022300 Medicago truncatula HOM05D000009 ORTHO05D000008 6.8e-08 60.1 43 67.4
Glyma.16G079400 Glycine max HOM05D000009 ORTHO05D000008 1.2e-07 59.3 50 60.0
Thecc.10G152800 Theobroma cacao HOM05D000009 ORTHO05D000008 1.5e-07 58.9 41 63.4
CAN.G1149.7 Capsicum annuum HOM05D000009 ORTHO05D000008 2.0e-07 58.5 55 60.0
FAN06G4126 Fragaria x ananassa HOM05D000009 ORTHO05D000008 2.0e-07 58.5 51 58.8
PGSC0003DMG400021779 Solanum tuberosum HOM05D000009 ORTHO05D000008 2.0e-07 58.5 43 67.4
Medtr3g021380 Medicago truncatula HOM05D000009 ORTHO05D000008 3.4e-07 57.8 53 58.5
Thecc.10G155900 Theobroma cacao HOM05D000009 ORTHO05D000008 3.4e-07 57.8 52 57.7
TPR.G10837 Trifolium pratense HOM05D000009 ORTHO05D000008 3.4e-07 57.8 54 57.4
TPR.G36031 Trifolium pratense HOM05D000009 ORTHO05D000008 3.4e-07 57.8 53 58.5
Carub.0003s1420 Capsella rubella HOM05D000009 ORTHO05D000008 5.8e-07 57.0 53 54.7
Medtr0425s0020 Medicago truncatula HOM05D000009 ORTHO05D000008 5.8e-07 57.0 47 61.7
Medtr3g022600 Medicago truncatula HOM05D000009 ORTHO05D000008 5.8e-07 57.0 47 61.7
GSVIVG01011193001 Vitis vinifera HOM05D000009 ORTHO05D000008 5.8e-07 57.0 53 56.6
Duzib151G1042 Durio zibethinus HOM05D000009 ORTHO05D000008 7.6e-07 56.6 53 52.8
Peaxi162Scf01048g00002 Petunia axillaris HOM05D000009 ORTHO05D000008 7.6e-07 56.6 32 84.4
Thecc.04G161700 Theobroma cacao HOM05D000009 ORTHO05D000008 7.6e-07 56.6 58 48.3
Thecc.10G152500 Theobroma cacao HOM05D000009 ORTHO05D000008 7.6e-07 56.6 41 63.4
Thecc.10G152900 Theobroma cacao HOM05D000009 ORTHO05D000008 7.6e-07 56.6 41 63.4
Lj3g0004557 Lotus japonicus HOM05D000009 ORTHO05D000008 9.9e-07 56.2 54 55.6
Prupe.2G053600 Prunus persica HOM05D000009 ORTHO05D000008 9.9e-07 56.2 53 56.6
Medtr3g035810 Medicago truncatula HOM05D000009 ORTHO05D000008 1.3e-06 55.8 42 66.7
Phvul.005G031200 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 1.3e-06 55.8 47 63.8
TPR.G9874 Trifolium pratense HOM05D000009 ORTHO05D000008 1.3e-06 55.8 42 66.7
GSVIVG01023312001 Vitis vinifera HOM05D000009 ORTHO05D000008 1.3e-06 55.8 53 52.8
CARHR043920 Cardamine hirsuta HOM05D000009 ORTHO05D000008 1.7e-06 55.5 49 55.1
Duzib114G0890 Durio zibethinus HOM05D000009 ORTHO05D000008 1.7e-06 55.5 54 55.6
QL04p010857 Quercus lobata HOM05D000009 ORTHO05D000008 1.7e-06 55.5 50 60.0
TPR.G569 Trifolium pratense HOM05D000009 ORTHO05D000008 1.7e-06 55.5 42 64.3
Actinidia10164 Actinidia chinensis HOM05D000009 ORTHO05D000008 2.2e-06 55.1 49 55.1
A05p34900 Brassica napus HOM05D000009 ORTHO05D000008 2.2e-06 55.1 50 52.0
BraA05t22303Z Brassica rapa HOM05D000009 ORTHO05D000008 2.2e-06 55.1 50 52.0
CANSAT54G2766 Cannabis sativa HOM05D000009 ORTHO05D000008 2.2e-06 55.1 50 60.0
Medtr3g021170 Medicago truncatula HOM05D000009 ORTHO05D000008 2.2e-06 55.1 53 56.6
Medtr3g022230 Medicago truncatula HOM05D000009 ORTHO05D000008 2.2e-06 55.1 54 53.7
Medtr3g022870 Medicago truncatula HOM05D000009 ORTHO05D000008 2.2e-06 55.1 50 60.0
Sc06g0006550 Simmondsia chinensis HOM05D000009 ORTHO05D000008 2.2e-06 55.1 50 58.0
PGSC0003DMG401010943 Solanum tuberosum HOM05D000009 ORTHO05D000008 2.2e-06 55.1 45 53.3
TPR.G3859 Trifolium pratense HOM05D000009 ORTHO05D000008 2.2e-06 55.1 42 66.7
Cpa.g.sc77.90 Carica papaya HOM05D000009 ORTHO05D000008 2.9e-06 54.7 47 55.3
Haze_03189 Corylus avellana HOM05D000009 ORTHO05D000008 2.9e-06 54.7 53 54.7
Duzib106G1785 Durio zibethinus HOM05D000009 ORTHO05D000008 2.9e-06 54.7 54 59.3
Duzib114G0972 Durio zibethinus HOM05D000009 ORTHO05D000008 2.9e-06 54.7 42 66.7
Prupe.2G051100 Prunus persica HOM05D000009 ORTHO05D000008 2.9e-06 54.7 53 56.6
TPR.G30440 Trifolium pratense HOM05D000009 ORTHO05D000008 2.9e-06 54.7 40 62.5
TAR623G0624 Trochodendron aralioides HOM05D000009 ORTHO05D000008 2.9e-06 54.7 53 54.7
Aa31LG8G1740 Aethionema arabicum HOM05D000009 ORTHO05D000008 3.7e-06 54.3 50 52.0
AL3G26850 Arabidopsis lyrata HOM05D000009 ORTHO05D000008 3.7e-06 54.3 52 51.9
Medtr3g022400 Medicago truncatula HOM05D000009 ORTHO05D000008 3.7e-06 54.3 48 58.3
Medtr8g039260 Medicago truncatula HOM05D000009 ORTHO05D000008 3.7e-06 54.3 48 58.3
QL04p016726 Quercus lobata HOM05D000009 ORTHO05D000008 3.7e-06 54.3 47 61.7
Thecc.10G153500 Theobroma cacao HOM05D000009 ORTHO05D000008 3.7e-06 54.3 55 54.5
TPR.G3847 Trifolium pratense HOM05D000009 ORTHO05D000008 3.7e-06 54.3 41 65.9
Cc00_g15890 Coffea canephora HOM05D000009 ORTHO05D000008 4.9e-06 53.9 37 67.6
Medtr3g021340 Medicago truncatula HOM05D000009 ORTHO05D000008 4.9e-06 53.9 42 64.3
Medtr3g022570 Medicago truncatula HOM05D000009 ORTHO05D000008 4.9e-06 53.9 53 54.7
Medtr3g022920 Medicago truncatula HOM05D000009 ORTHO05D000008 4.9e-06 53.9 51 54.9
Medtr3g032110 Medicago truncatula HOM05D000009 ORTHO05D000008 4.9e-06 53.9 54 53.7
Medtr8g038570 Medicago truncatula HOM05D000009 ORTHO05D000008 4.9e-06 53.9 55 52.7
Prupe.2G053800 Prunus persica HOM05D000009 ORTHO05D000008 4.9e-06 53.9 50 58.0
RcHm_v2.0_Chr5g0039531 Rosa chinensis HOM05D000009 ORTHO05D000008 4.9e-06 53.9 42 64.3
Sc06g0006530 Simmondsia chinensis HOM05D000009 ORTHO05D000008 4.9e-06 53.9 52 57.7
Sopen11g027000 Solanum pennellii HOM05D000009 ORTHO05D000008 4.9e-06 53.9 32 81.2
Sopen11g028600 Solanum pennellii HOM05D000009 ORTHO05D000008 4.9e-06 53.9 35 71.4
Thecc.07G139900 Theobroma cacao HOM05D000009 ORTHO05D000008 4.9e-06 53.9 49 59.2
arahy.Tifrunner.gnm1.ann1.04BQTE Arachis hypogaea HOM05D000009 ORTHO05D000008 6.4e-06 53.5 37 64.9
Glyma.03G043080 Glycine max HOM05D000009 ORTHO05D000008 6.4e-06 53.5 52 51.9
Glyma.03G043500 Glycine max HOM05D000009 ORTHO05D000008 6.4e-06 53.5 52 51.9
Glyma.03G043600 Glycine max HOM05D000009 ORTHO05D000008 6.4e-06 53.5 52 51.9
Glyma.03G044150 Glycine max HOM05D000009 ORTHO05D000008 6.4e-06 53.5 52 51.9
Gohir.D11G327000 Gossypium hirsutum HOM05D000009 ORTHO05D000008 6.4e-06 53.5 50 58.0
Gorai.007G357700 Gossypium raimondii HOM05D000009 ORTHO05D000008 6.4e-06 53.5 50 58.0
Medtr3g022790 Medicago truncatula HOM05D000009 ORTHO05D000008 6.4e-06 53.5 36 69.4
Medtr3g022940 Medicago truncatula HOM05D000009 ORTHO05D000008 6.4e-06 53.5 43 60.5
Sp3g12780 Schrenkiella parvula HOM05D000009 ORTHO05D000008 6.4e-06 53.5 49 51.0
TPR.G5894 Trifolium pratense HOM05D000009 ORTHO05D000008 6.4e-06 53.5 43 65.1
CAN.G963.9 Capsicum annuum HOM05D000009 ORTHO05D000008 8.4e-06 53.1 35 71.4
Duzib213G0765 Durio zibethinus HOM05D000009 ORTHO05D000008 8.4e-06 53.1 51 58.8
MD03G1006200 Malus domestica HOM05D000009 ORTHO05D000008 8.4e-06 53.1 48 58.3
Peaxi162Scf03637g00004 Petunia axillaris HOM05D000009 ORTHO05D000008 8.4e-06 53.1 28 89.3
Thecc.10G151400 Theobroma cacao HOM05D000009 ORTHO05D000008 8.4e-06 53.1 55 54.5
GSVIVG01022856001 Vitis vinifera HOM05D000009 ORTHO05D000008 8.4e-06 53.1 53 54.7


User provided reference genes

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