Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 0.0e+00 1596.6 777 100.0
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1467.6 762 94.1
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1465.3 762 94.1
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1333.9 751 87.5
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1305.8 727 88.0
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1270.4 727 86.2
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1167.9 765 73.7
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1141.7 765 72.3
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1137.5 756 72.6
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1127.9 762 71.5
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 0.0e+00 1127.1 775 70.7
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1126.3 788 70.3
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1123.2 756 71.7
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1116.3 755 72.3
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1111.3 734 73.2
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1104.7 765 71.2
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1103.6 752 71.5
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1101.7 752 69.5
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1101.7 756 71.7
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1100.5 735 71.7
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1094.7 762 69.8
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1088.2 751 70.3
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1085.9 756 69.6
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1085.9 758 70.4
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 0.0e+00 1085.5 755 70.3
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1083.9 765 69.3
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1083.6 735 71.2
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1081.2 735 71.0
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1079.7 756 69.7
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 0.0e+00 1077.8 768 69.3
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1075.8 758 68.2
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1075.5 757 69.0
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 1.1e-311 1072.8 756 68.7
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 2.7e-311 1071.6 732 71.2
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 6.4e-311 1070.5 734 70.2
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 2.3e-310 1068.5 807 66.5
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 5.3e-310 1067.4 734 71.3
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 1.2e-309 1066.2 732 71.4
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 1.7e-308 1062.4 733 70.5
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 1.2e-306 1056.2 747 68.7
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 1.2e-306 1056.2 539 95.9
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 2.3e-305 1052.0 819 63.4
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 3.0e-305 1051.6 735 69.8
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 4.3e-304 1047.7 760 67.0
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 5.6e-304 1047.3 732 68.7
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 1.3e-303 1046.2 747 68.7
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 2.1e-303 1045.4 732 69.1
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 2.1e-303 1045.4 778 67.2
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 8.1e-303 1043.5 732 69.1
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 5.3e-302 1040.8 752 67.6
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 1.2e-301 1039.6 727 69.5
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 1.7e-300 1035.8 738 68.7
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 2.9e-300 1035.0 755 65.7
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 4.2e-299 1031.2 753 66.4
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 2.1e-298 1028.9 785 64.7
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 2.7e-298 1028.5 729 68.4
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 2.7e-298 1028.5 732 69.4
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 3.5e-298 1028.1 755 66.2
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 1.8e-297 1025.8 757 66.4
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 1.8e-297 1025.8 765 66.0
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 2.3e-297 1025.4 730 67.9
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 2.3e-297 1025.4 755 65.3
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 5.1e-297 1024.2 730 67.9
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 1.9e-296 1022.3 735 68.6
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 2.5e-296 1021.9 751 66.0
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 2.5e-296 1021.9 741 67.3
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 7.4e-296 1020.4 744 66.4
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 1.6e-295 1019.2 728 69.1
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 2.1e-295 1018.8 744 66.4
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 2.1e-295 1018.8 730 67.7
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 1.1e-294 1016.5 728 68.7
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 2.4e-294 1015.4 736 68.8
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 2.4e-294 1015.4 736 68.8
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 2.4e-294 1015.4 734 68.8
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 4.0e-294 1014.6 731 68.1
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 1.2e-293 1013.1 732 68.4
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 1.5e-293 1012.7 727 67.8
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 2.6e-293 1011.9 737 68.0
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 3.4e-293 1011.5 724 68.9
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 3.4e-293 1011.5 732 67.3
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 2.2e-292 1008.8 742 67.0
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 1.1e-291 1006.5 724 68.2
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 1.1e-291 1006.5 731 67.9
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 1.1e-291 1006.5 749 66.4
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 1.1e-291 1006.5 735 68.3
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 1.4e-291 1006.1 732 66.8
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 1.9e-291 1005.7 732 66.5
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 2.5e-291 1005.4 777 64.7
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 5.5e-291 1004.2 733 67.5
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 7.1e-291 1003.8 732 66.7
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 9.3e-291 1003.4 814 61.2
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 2.7e-290 1001.9 754 64.5
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 1.0e-289 1000.0 732 66.4
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 1.6e-287 992.6 732 65.7
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 9.0e-286 986.9 771 62.9
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 1.2e-285 986.5 816 61.4
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 2.5e-280 968.8 757 65.1
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 3.3e-280 968.4 775 63.1
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 1.3e-276 956.4 642 72.3
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 5.5e-275 951.0 834 59.0
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 1.7e-268 929.5 636 71.9
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 2.9e-268 928.7 736 63.3
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 2.5e-251 872.5 675 63.3
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 3.0e-249 865.5 595 70.3
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 1.8e-246 856.3 596 69.6
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 7.7e-245 850.9 735 58.4
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 1.9e-243 846.3 570 71.4
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 3.0e-241 839.0 760 56.1
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 9.8e-240 833.9 592 67.7
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 1.9e-235 819.7 758 55.0
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 1.9e-222 776.5 710 55.4
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 3.5e-221 772.3 795 49.6
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 4.7e-218 761.9 765 50.6
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 9.2e-206 721.1 720 51.5
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 3.0e-180 636.3 657 51.0
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 2.6e-168 596.7 422 70.9
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 9.3e-166 588.2 413 66.8
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 5.5e-158 562.4 678 46.5
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 4.6e-157 559.3 457 59.1
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 5.0e-151 539.3 437 60.0
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.4e-150 537.7 585 47.4
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 2.6e-144 516.9 533 53.7
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.2e-115 421.8 317 62.1
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 1.1e-110 405.2 327 60.2
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 1.8e-100 371.3 970 29.7
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 2.7e-80 304.3 233 66.5
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 2.4e-73 281.2 384 44.0
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 5.5e-65 253.4 261 54.0
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.0e-63 249.2 258 54.3
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.3e-55 222.2 210 56.7
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 6.7e-55 219.9 224 54.5
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 9.7e-46 189.5 356 35.7
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 8.2e-45 186.4 175 53.7
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.8e-44 185.3 175 53.7
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.8e-44 185.3 175 53.7
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.8e-44 185.3 175 53.7
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.5e-43 182.2 175 53.1
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 2.5e-41 174.9 144 54.2
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 3.2e-41 174.5 243 43.2
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.0e-34 152.9 175 48.0
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 4.7e-32 144.1 375 30.7
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 2.6e-22 111.7 103 59.2
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 1.3e-18 99.4 318 28.6
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 2.1e-16 92.0 58 65.5
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 8.0e-16 90.1 79 53.2
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 7.5e-14 83.6 79 49.4
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 1.5e-09 69.3 53 64.2


User provided reference genes

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