Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402019957 Solanum tuberosum HOM05D002453 ORTHO05D002107 3.0e-116 423.3 206 100.0
Solyc12g035170.3 Solanum lycopersicum HOM05D002453 ORTHO05D002107 2.2e-103 380.6 205 90.2
Sopen12g014620 Solanum pennellii HOM05D002453 ORTHO05D002107 3.8e-103 379.8 204 90.2
Sopen06g008530 Solanum pennellii HOM05D002453 ORTHO05D002107 1.1e-86 325.1 172 93.0
Nitab4.5_0000026g0050 Nicotiana tabacum HOM05D002453 ORTHO05D002107 1.5e-83 314.7 172 88.4
Peaxi162Scf00103g00021 Petunia axillaris HOM05D002453 ORTHO05D002107 5.0e-79 299.7 172 85.5
CAN.G1456.8 Capsicum annuum HOM05D002453 ORTHO05D002107 6.5e-79 299.3 171 86.0
Nitab4.5_0005983g0010 Nicotiana tabacum HOM05D002453 ORTHO05D002107 2.6e-75 287.3 172 82.6
PGSC0003DMG400015841 Solanum tuberosum HOM05D002453 ORTHO05D002107 1.1e-70 271.9 142 92.3
Atru.chr9.2259 Acer truncatum HOM05D002453 ORTHO05D002107 1.5e-62 245.0 168 70.2
Glyma.17G099400 Glycine max HOM05D002453 ORTHO05D002107 1.9e-62 244.6 168 69.6
Ca_21825_v3 Cicer arietinum L. HOM05D002453 ORTHO05D002107 4.7e-61 240.0 168 69.0
Lj5C111T12 Lonicera japonica HOM05D002453 ORTHO05D002107 5.2e-60 236.5 167 68.3
Lalb_Chr07g0177921 Lupinus albus HOM05D002453 ORTHO05D002107 8.9e-60 235.7 172 66.3
Psat4g051440 Pisum sativum HOM05D002453 ORTHO05D002107 6.4e-58 229.6 168 66.7
Manes.14G077600 Manihot esculenta HOM05D002453 ORTHO05D002107 9.2e-57 225.7 168 64.3
ECA247G2160 Erigeron canadensis HOM05D002453 ORTHO05D002107 1.2e-56 225.3 166 65.7
FAN18G2707 Fragaria x ananassa HOM05D002453 ORTHO05D002107 6.6e-55 219.5 170 62.4
FvH4_5g15040 Fragaria vesca HOM05D002453 ORTHO05D002107 8.6e-55 219.2 170 62.4
FAN08G1232 Fragaria x ananassa HOM05D002453 ORTHO05D002107 1.1e-54 218.8 170 62.4
Lsat_1_v5_gn_1_13300 Lactuca sativa HOM05D002453 ORTHO05D002107 9.5e-54 215.7 169 62.7
Sc04g0002590 Simmondsia chinensis HOM05D002453 ORTHO05D002107 4.7e-53 213.4 168 59.5
Phvul.008G197400 Phaseolus vulgaris HOM05D002453 ORTHO05D002107 6.2e-53 213.0 168 63.1
Oeu016166.1 Olea europaea HOM05D002453 ORTHO05D002107 1.1e-52 212.2 170 59.4
RcHm_v2.0_Chr7g0181161 Rosa chinensis HOM05D002453 ORTHO05D002107 1.1e-52 212.2 172 61.0
Cc04_g16730 Coffea canephora HOM05D002453 ORTHO05D002107 8.9e-52 209.1 167 61.1
Sed0001810 Sechium edule HOM05D002453 ORTHO05D002107 8.9e-52 209.1 185 56.8
Sed0019268 Sechium edule HOM05D002453 ORTHO05D002107 8.9e-52 209.1 185 56.8
MELO3C001976.2 Cucumis melo HOM05D002453 ORTHO05D002107 2.0e-51 208.0 170 58.8
VMungo0647G1609 Vigna mungo HOM05D002453 ORTHO05D002107 4.9e-50 203.4 168 60.1
MSTRG.23026 Avicennia marina HOM05D002453 ORTHO05D002107 6.4e-50 203.0 168 60.1
BcaC08g46890 Brassica carinata HOM05D002453 ORTHO05D002107 8.3e-50 202.6 165 58.8
C06p48690 Brassica napus HOM05D002453 ORTHO05D002107 8.3e-50 202.6 165 58.8
Ah.11g048530 Amaranthus hybridus HOM05D002453 ORTHO05D002107 3.2e-49 200.7 178 54.5
Actinidia37632 Actinidia chinensis HOM05D002453 ORTHO05D002107 6.0e-48 196.4 173 56.1
ECA247G1303 Erigeron canadensis HOM05D002453 ORTHO05D002107 7.6e-43 179.5 137 64.2
AUR62021699 Chenopodium quinoa HOM05D002453 ORTHO05D002107 1.1e-41 175.6 169 50.3
AUR62008396 Chenopodium quinoa HOM05D002453 ORTHO05D002107 3.5e-40 170.6 169 49.1
Hma1.2p1_0735F.1_g210570 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 5.1e-39 166.8 167 52.7
Hma1.2p1_0735F.1_g210580 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 1.9e-38 164.9 167 52.1
Migut.I00174 Erythranthe guttata HOM05D002453 ORTHO05D002107 4.3e-38 163.7 114 66.7
TPR.G9250 Trifolium pratense HOM05D002453 ORTHO05D002107 1.1e-36 159.1 184 47.8
PGR083G0367 Punica granatum HOM05D002453 ORTHO05D002107 3.1e-36 157.5 168 50.0
Medtr4g108650 Medicago truncatula HOM05D002453 ORTHO05D002107 2.6e-35 154.5 168 51.2
DCAR_016546 Daucus carota HOM05D002453 ORTHO05D002107 2.1e-32 144.8 163 47.2
EL10Ac5g10989 Beta vulgaris HOM05D002453 ORTHO05D002107 2.5e-30 137.9 168 43.5
CSS0042446 Camellia sinensis var. sinensis HOM05D002453 ORTHO05D002107 2.5e-30 137.9 161 47.2
Ciclev10018977m.g Citrus clementina HOM05D002453 ORTHO05D002107 3.3e-30 137.5 165 46.7
CiPaw.11G043600 Carya illinoinensis HOM05D002453 ORTHO05D002107 9.6e-30 136.0 171 45.0
CSS0000495 Camellia sinensis var. sinensis HOM05D002453 ORTHO05D002107 1.3e-29 135.6 161 46.6
CsaV3_1G005400 Cucumis sativus L. HOM05D002453 ORTHO05D002107 8.1e-29 132.9 185 42.7
Cpa.g.sc17.235 Carica papaya HOM05D002453 ORTHO05D002107 1.1e-28 132.5 168 44.6
COL.COLO4_24521 Corchorus olitorius HOM05D002453 ORTHO05D002107 1.1e-28 132.5 169 44.4
Gorai.008G192600 Gossypium raimondii HOM05D002453 ORTHO05D002107 1.8e-28 131.7 169 43.2
Dinv38703 Davidia involucrata HOM05D002453 ORTHO05D002107 3.1e-28 131.0 161 46.6
BcaC08g46987 Brassica carinata HOM05D002453 ORTHO05D002107 5.3e-28 130.2 162 45.1
Aa31LG4G4820 Aethionema arabicum HOM05D002453 ORTHO05D002107 6.9e-28 129.8 102 60.8
Rhsim08G0155900 Rhododendron simsii HOM05D002453 ORTHO05D002107 6.9e-28 129.8 168 44.0
HanXRQChr16g0518411 Helianthus annuus HOM05D002453 ORTHO05D002107 7.6e-27 126.3 82 75.6
QL10p016708 Quercus lobata HOM05D002453 ORTHO05D002107 9.9e-27 125.9 205 39.5
Cfa018952 Carpinus fangiana HOM05D002453 ORTHO05D002107 2.9e-26 124.4 180 42.2
Duzib205G1690 Durio zibethinus HOM05D002453 ORTHO05D002107 3.8e-26 124.0 172 41.3
Haze_07333 Corylus avellana HOM05D002453 ORTHO05D002107 4.9e-26 123.6 204 39.2
Gohir.A12G177000 Gossypium hirsutum HOM05D002453 ORTHO05D002107 6.4e-26 123.2 169 41.4
Lj4g0004352 Lotus japonicus HOM05D002453 ORTHO05D002107 1.1e-25 122.5 168 41.7
Eucgr.B00492 Eucalyptus grandis HOM05D002453 ORTHO05D002107 1.4e-25 122.1 174 40.8
MD06G1192500 Malus domestica HOM05D002453 ORTHO05D002107 2.4e-25 121.3 181 40.9
TWI81G0810 Tripterygium wilfordii HOM05D002453 ORTHO05D002107 3.2e-25 120.9 167 42.5
arahy.Tifrunner.gnm1.ann1.M3LQ04 Arachis hypogaea HOM05D002453 ORTHO05D002107 5.4e-25 120.2 168 42.3
arahy.Tifrunner.gnm1.ann1.SFY2YX Arachis hypogaea HOM05D002453 ORTHO05D002107 5.4e-25 120.2 168 42.3
TAR371G0278 Trochodendron aralioides HOM05D002453 ORTHO05D002107 7.1e-25 119.8 168 41.1
Thecc.03G085300 Theobroma cacao HOM05D002453 ORTHO05D002107 9.3e-25 119.4 169 42.0
GSVIVG01008016001 Vitis vinifera HOM05D002453 ORTHO05D002107 2.7e-24 117.9 168 41.7
Potri.010G234500 Populus trichocarpa HOM05D002453 ORTHO05D002107 3.5e-24 117.5 168 43.5
ClCG04G012320 Citrullus lanatus HOM05D002453 ORTHO05D002107 4.6e-24 117.1 161 39.8
Prupe.5G192300 Prunus persica HOM05D002453 ORTHO05D002107 4.6e-24 117.1 174 40.2
BcaC08g46889 Brassica carinata HOM05D002453 ORTHO05D002107 6.0e-24 116.7 83 60.2
ATR0564G099 Amborella trichopoda HOM05D002453 ORTHO05D002107 1.3e-23 115.5 88 62.5
Aqoxy3G03369 Aquilegia oxysepala HOM05D002453 ORTHO05D002107 1.3e-23 115.5 168 40.5
THA.LOC104813874 Tarenaya hassleriana HOM05D002453 ORTHO05D002107 2.5e-22 111.3 171 38.6
HPP92_026434 Vanilla planifolia HOM05D002453 ORTHO05D002107 1.1e-20 105.9 75 64.0
PSO478G4167 Papaver somniferum HOM05D002453 ORTHO05D002107 1.5e-19 102.1 178 34.3
SHI14130 Sapria himalayana HOM05D002453 ORTHO05D002107 1.5e-19 102.1 170 37.6
CANSAT80G2218 Cannabis sativa HOM05D002453 ORTHO05D002107 7.6e-19 99.8 82 57.3
CARHR067850 Cardamine hirsuta HOM05D002453 ORTHO05D002107 1.3e-18 99.0 168 36.3
Thhalv10018169m.g Eutrema salsugineum HOM05D002453 ORTHO05D002107 2.9e-18 97.8 168 36.3
Carub.0002s2137 Capsella rubella HOM05D002453 ORTHO05D002107 1.4e-17 95.5 168 35.1
AL2G34470 Arabidopsis lyrata HOM05D002453 ORTHO05D002107 1.9e-17 95.1 166 35.5
AT1G74580 Arabidopsis thaliana HOM05D002453 ORTHO05D002107 7.1e-17 93.2 166 34.9
Os07g0101200 Oryza sativa ssp. japonica HOM05D002453 ORTHO05D002107 7.9e-16 89.7 67 62.7
BraA07t31576Z Brassica rapa HOM05D002453 ORTHO05D002107 1.0e-15 89.4 160 35.0
A07p40350 Brassica napus HOM05D002453 ORTHO05D002107 1.3e-15 89.0 160 35.0
BolC6t39902H Brassica oleracea HOM05D002453 ORTHO05D002107 1.3e-15 89.0 164 34.8
Sabra10G0181800 Salix brachista HOM05D002453 ORTHO05D002107 6.2e-13 80.1 161 34.2
Actinidia04897 Actinidia chinensis HOM05D002453 ORTHO05D002107 2.4e-12 78.2 52 67.3
CDE06G2834 Ceratophyllum demersum HOM05D002453 ORTHO05D002107 1.3e-10 72.4 43 74.4
CDE08G0247 Ceratophyllum demersum HOM05D007486 ORTHO05D003673 2.2e-10 71.6 167 28.1
Zm00001eb118400 Zea mays HOM05D002453 ORTHO05D002107 3.2e-09 67.8 50 58.0
Sopen12g014610 Solanum pennellii HOM05D002453 ORTHO05D002107 1.3e-07 62.4 31 90.3
SEGI_33348 Sequoiadendron giganteum HOM05D002453 ORTHO05D002107 2.3e-07 61.6 50 58.0
Nn1g09793 Nelumbo nucifera HOM05D002453 ORTHO05D002107 5.1e-07 60.5 141 31.2
MD05G1166500 Malus domestica HOM05D007486 ORTHO05D003673 1.1e-06 59.3 137 30.7
Sabra02G0188800 Salix brachista HOM05D007486 ORTHO05D003673 2.5e-06 58.2 107 29.9
CANSAT01G2277 Cannabis sativa HOM05D007486 ORTHO05D003673 3.3e-06 57.8 151 29.8
CANSAT01G2464 Cannabis sativa HOM05D007486 ORTHO05D003673 3.3e-06 57.8 151 29.8
Ca_16602_v3 Cicer arietinum L. HOM05D000424 ORTHO05D000355 3.3e-06 57.8 102 31.4
SHI12026 Sapria himalayana HOM05D000424 ORTHO05D000355 3.3e-06 57.8 121 26.4
Lj8P583T10 Lonicera japonica HOM05D004670 ORTHO05D008020 9.7e-06 56.2 105 30.5


User provided reference genes

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