Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402018519 Solanum tuberosum HOM05D006582 ORTHO05D008313 5.9e-161 570.9 295 100.0
Sopen03g022560 Solanum pennellii HOM05D006582 ORTHO05D008313 1.6e-158 562.8 295 98.0
Solyc03g082820.3 Solanum lycopersicum HOM05D006582 ORTHO05D008313 2.1e-158 562.4 295 97.6
CAN.G481.47 Capsicum annuum HOM05D006582 ORTHO05D008313 2.0e-148 529.3 297 92.9
Peaxi162Scf00740g00331 Petunia axillaris HOM05D006582 ORTHO05D008313 2.8e-147 525.4 295 92.2
Hma1.2p1_0415F.1_g148010 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 9.4e-135 483.8 295 81.7
Actinidia34241 Actinidia chinensis HOM05D006582 ORTHO05D008313 1.2e-134 483.4 295 82.4
Dinv29249 Davidia involucrata HOM05D006582 ORTHO05D008313 2.1e-134 482.6 295 83.1
CSS0043436 Camellia sinensis var. sinensis HOM05D006582 ORTHO05D008313 1.2e-132 476.9 295 81.7
SGA_v2.0_scaffold18G08434 Striga asiatica HOM05D006582 ORTHO05D008313 2.0e-132 476.1 295 81.7
CSS0003388 Camellia sinensis var. sinensis HOM05D006582 ORTHO05D008313 3.3e-132 475.3 295 81.4
Rhsim03G0211600 Rhododendron simsii HOM05D006582 ORTHO05D008313 2.4e-130 469.2 295 80.0
Migut.F00182 Erythranthe guttata HOM05D006582 ORTHO05D008313 9.1e-130 467.2 295 80.7
SalBow4G1606 Salvia bowleyana HOM05D006582 ORTHO05D008313 1.0e-128 463.8 295 79.3
Lj3A900T44 Lonicera japonica HOM05D006582 ORTHO05D008313 5.5e-127 458.0 297 78.5
Nitab4.5_0002780g0150 Nicotiana tabacum HOM05D006582 ORTHO05D008313 2.3e-125 452.6 314 79.0
Cc04_g16300 Coffea canephora HOM05D006582 ORTHO05D008313 3.0e-125 452.2 295 77.3
Thecc.03G203200 Theobroma cacao HOM05D006582 ORTHO05D008313 1.2e-124 450.3 312 75.3
Lsat_1_v5_gn_2_135281 Lactuca sativa HOM05D006582 ORTHO05D008313 3.4e-124 448.7 300 76.3
GSVIVG01038593001 Vitis vinifera HOM05D006582 ORTHO05D008313 5.7e-124 448.0 299 76.9
PGR142G1628 Punica granatum HOM05D006582 ORTHO05D008313 6.3e-123 444.5 303 75.6
THA.LOC104811904 Tarenaya hassleriana HOM05D006582 ORTHO05D008313 1.1e-122 443.7 304 73.7
COL.COLO4_16812 Corchorus olitorius HOM05D006582 ORTHO05D008313 1.4e-122 443.4 312 74.0
Gohir.D08G113800 Gossypium hirsutum HOM05D006582 ORTHO05D008313 1.4e-122 443.4 312 73.7
Gorai.004G122700 Gossypium raimondii HOM05D006582 ORTHO05D008313 1.4e-122 443.4 312 73.7
Nitab4.5_0007755g0010 Nicotiana tabacum HOM05D006582 ORTHO05D008313 1.8e-122 443.0 336 73.8
TAR374G0762 Trochodendron aralioides HOM05D006582 ORTHO05D008313 3.1e-122 442.2 298 76.2
Cfa016201 Carpinus fangiana HOM05D006582 ORTHO05D008313 5.4e-122 441.4 303 74.9
MD07G1135900 Malus domestica HOM05D006582 ORTHO05D008313 1.6e-121 439.9 300 75.7
Ciclev10021376m.g Citrus clementina HOM05D006582 ORTHO05D008313 2.7e-121 439.1 300 75.0
Duzib068G0295 Durio zibethinus HOM05D006582 ORTHO05D008313 3.5e-121 438.7 312 74.0
FAN03G0584 Fragaria x ananassa HOM05D006582 ORTHO05D008313 3.5e-121 438.7 300 76.3
FAN06G3963 Fragaria x ananassa HOM05D006582 ORTHO05D008313 3.5e-121 438.7 300 76.0
RcHm_v2.0_Chr1g0355871 Rosa chinensis HOM05D006582 ORTHO05D008313 3.5e-121 438.7 300 76.0
Prupe.2G171600 Prunus persica HOM05D006582 ORTHO05D008313 4.5e-121 438.3 301 75.7
unitig_747.g21740 Utricularia gibba HOM05D006582 ORTHO05D008313 4.5e-121 438.3 295 73.9
vmacro06405 Vaccinium macrocarpon HOM05D006582 ORTHO05D008313 4.5e-121 438.3 341 68.0
FvH4_7g14460 Fragaria vesca HOM05D006582 ORTHO05D008313 5.9e-121 438.0 300 76.0
FAN06G2233 Fragaria x ananassa HOM05D006582 ORTHO05D008313 5.9e-121 438.0 300 76.0
FAN01G0099 Fragaria x ananassa HOM05D006582 ORTHO05D008313 1.3e-120 436.8 300 75.7
Ah.07g205040 Amaranthus hybridus HOM05D006582 ORTHO05D008313 1.7e-120 436.4 273 79.1
Sabra15G0024300 Salix brachista HOM05D006582 ORTHO05D008313 3.8e-120 435.3 309 73.1
Sed0002968 Sechium edule HOM05D006582 ORTHO05D008313 6.6e-120 434.5 306 72.9
CiPaw.06G044200 Carya illinoinensis HOM05D006582 ORTHO05D008313 1.1e-119 433.7 302 73.8
CsaV3_5G000310 Cucumis sativus L. HOM05D006582 ORTHO05D008313 1.1e-119 433.7 305 73.4
HanXRQChr07g0206401 Helianthus annuus HOM05D006582 ORTHO05D008313 1.1e-119 433.7 294 75.5
EL10Ac3g05224 Beta vulgaris HOM05D006582 ORTHO05D008313 7.2e-119 431.0 273 77.3
MELO3C005901.2 Cucumis melo HOM05D006582 ORTHO05D008313 7.2e-119 431.0 305 73.4
AUR62035580 Chenopodium quinoa HOM05D006582 ORTHO05D008313 9.5e-119 430.6 292 74.0
Manes.01G148600 Manihot esculenta HOM05D006582 ORTHO05D008313 1.6e-118 429.9 301 74.1
CANSAT21G1996 Cannabis sativa HOM05D006582 ORTHO05D008313 4.7e-118 428.3 303 75.6
AUR62006048 Chenopodium quinoa HOM05D006582 ORTHO05D008313 4.7e-118 428.3 269 78.1
Aa31LG3G9690 Aethionema arabicum HOM05D006582 ORTHO05D008313 3.0e-117 425.6 306 70.3
TWI60G0746 Tripterygium wilfordii HOM05D006582 ORTHO05D008313 5.2e-117 424.9 314 72.3
arahy.Tifrunner.gnm1.ann1.AV4C6H Arachis hypogaea HOM05D006582 ORTHO05D008313 6.8e-117 424.5 302 73.2
arahy.Tifrunner.gnm1.ann1.D33ADG Arachis hypogaea HOM05D006582 ORTHO05D008313 6.8e-117 424.5 302 73.2
Sc19g0000750 Simmondsia chinensis HOM05D006582 ORTHO05D008313 8.9e-117 424.1 305 70.5
Nn6g34389 Nelumbo nucifera HOM05D006582 ORTHO05D008313 1.2e-116 423.7 299 72.9
Haze_00249 Corylus avellana HOM05D006582 ORTHO05D008313 2.0e-116 422.9 331 68.3
Haze_00255 Corylus avellana HOM05D006582 ORTHO05D008313 2.0e-116 422.9 331 68.3
BcaNung01623 Brassica carinata HOM05D006582 ORTHO05D008313 2.6e-116 422.5 306 71.6
Thhalv10025816m.g Eutrema salsugineum HOM05D006582 ORTHO05D008313 3.4e-116 422.2 306 69.9
BcaC09g50542 Brassica carinata HOM05D006582 ORTHO05D008313 7.5e-116 421.0 306 70.9
A01p19210 Brassica napus HOM05D006582 ORTHO05D008313 1.3e-115 420.2 306 70.9
Carub.0007s1306 Capsella rubella HOM05D006582 ORTHO05D008313 1.3e-115 420.2 306 70.6
AT4G27750 Arabidopsis thaliana HOM05D006582 ORTHO05D008313 1.7e-115 419.9 306 70.6
C01p24110 Brassica napus HOM05D006582 ORTHO05D008313 1.7e-115 419.9 306 70.9
CARHR235480 Cardamine hirsuta HOM05D006582 ORTHO05D008313 1.7e-115 419.9 306 70.9
QL09p007748 Quercus lobata HOM05D006582 ORTHO05D008313 1.7e-115 419.9 308 71.1
BraA01t01863Z Brassica rapa HOM05D006582 ORTHO05D008313 2.2e-115 419.5 306 70.9
Phvul.011G018800 Phaseolus vulgaris HOM05D006582 ORTHO05D008313 2.2e-115 419.5 301 72.8
Sp7g25720 Schrenkiella parvula HOM05D006582 ORTHO05D008313 8.3e-115 417.5 306 69.3
VMungo1127G0470 Vigna mungo HOM05D006582 ORTHO05D008313 1.4e-114 416.8 300 72.3
AL7G24900 Arabidopsis lyrata HOM05D006582 ORTHO05D008313 2.4e-114 416.0 308 69.5
Aqoxy7G00041 Aquilegia oxysepala HOM05D006582 ORTHO05D008313 3.1e-114 415.6 296 71.6
Hund11634 Selenicereus undatus HOM05D006582 ORTHO05D008313 4.1e-114 415.2 271 73.8
Glyma.11G108800 Glycine max HOM05D006582 ORTHO05D008313 5.4e-114 414.8 310 71.6
Lj3g0025694 Lotus japonicus HOM05D006582 ORTHO05D008313 4.5e-113 411.8 301 72.4
DCAR_008960 Daucus carota HOM05D006582 ORTHO05D008313 7.8e-113 411.0 285 74.4
Glyma.12G016600 Glycine max HOM05D006582 ORTHO05D008313 1.7e-112 409.8 302 71.9
BolC1t02368H Brassica oleracea HOM05D006582 ORTHO05D008313 1.5e-111 406.8 335 65.1
PSO782G4269 Papaver somniferum HOM05D006582 ORTHO05D008313 5.6e-111 404.8 296 70.3
Medtr4g078140 Medicago truncatula HOM05D006582 ORTHO05D008313 2.1e-110 402.9 307 69.7
TPR.G19615 Trifolium pratense HOM05D006582 ORTHO05D008313 3.6e-110 402.1 305 68.9
Ca_18952_v3 Cicer arietinum L. HOM05D006582 ORTHO05D008313 6.1e-110 401.4 305 69.5
Hund21029 Selenicereus undatus HOM05D006582 ORTHO05D008313 6.1e-110 401.4 288 71.2
Psat7g170040 Pisum sativum HOM05D006582 ORTHO05D008313 2.3e-109 399.4 305 68.5
SGA_v2.0_scaffold44G16825 Striga asiatica HOM05D006582 ORTHO05D008313 3.1e-109 399.1 295 70.5
MD01G1064000 Malus domestica HOM05D006582 ORTHO05D008313 2.9e-107 392.5 319 68.7
ECA238G3804 Erigeron canadensis HOM05D006582 ORTHO05D008313 1.9e-106 389.8 278 74.5
Lalb_Chr03g0024361 Lupinus albus HOM05D006582 ORTHO05D008313 3.2e-106 389.0 304 67.4
BcaNung01628 Brassica carinata HOM05D006582 ORTHO05D008313 8.0e-102 374.4 306 65.7
MBI04_g35986_MAGBIO Magnolia biondii HOM05D006582 ORTHO05D008313 2.9e-99 365.9 297 67.3
BcaNung01632 Brassica carinata HOM05D006582 ORTHO05D008313 3.0e-96 355.9 320 61.9
Hma1.2p1_0415F.1_g148020 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 2.8e-94 349.4 220 79.1
Os06g0129300 Oryza sativa ssp. japonica HOM05D006582 ORTHO05D008313 1.6e-89 333.6 272 64.0
ATR0933G001 Amborella trichopoda HOM05D006582 ORTHO05D008313 3.0e-88 329.3 309 57.6
Zm00001eb378450 Zea mays HOM05D006582 ORTHO05D008313 4.7e-86 322.0 291 59.1
Eucgr.K00407 Eucalyptus grandis HOM05D006582 ORTHO05D008313 2.9e-83 312.8 233 71.7
Gohir.A08G102500 Gossypium hirsutum HOM05D006582 ORTHO05D008313 7.1e-82 308.1 237 68.8
HPP92_007389 Vanilla planifolia HOM05D006582 ORTHO05D008313 2.3e-80 303.1 278 59.0
MD01G1064500 Malus domestica HOM05D006582 ORTHO05D008313 8.7e-80 301.2 202 78.2
MD01G1063600 Malus domestica HOM05D006582 ORTHO05D008313 1.2e-73 280.8 254 62.6
CDE04G1908 Ceratophyllum demersum HOM05D006582 ORTHO05D008313 1.1e-71 274.2 295 51.5
Potri.015G029300 Populus trichocarpa HOM05D006582 ORTHO05D008313 7.6e-68 261.5 208 67.8
PGSC0003DMG401018519 Solanum tuberosum HOM05D006582 ORTHO05D008313 7.1e-66 255.0 156 89.1
Os10g0520900 Oryza sativa ssp. japonica HOM05D006582 ORTHO05D008313 1.3e-59 234.2 263 46.8
Zm00001eb021230 Zea mays HOM05D006582 ORTHO05D008313 1.5e-55 220.7 283 42.8
Cpa.g.sc3.116 Carica papaya HOM05D006582 ORTHO05D008313 8.2e-54 214.9 192 62.0
Mapoly0081s0017 Marchantia polymorpha HOM05D006582 ORTHO05D008313 5.5e-50 202.2 316 38.6
SMO356G0114 Selaginella moellendorffii HOM05D001613 ORTHO05D001556 1.6e-46 190.7 285 37.9
AagrBONN_evm.TU.Sc2ySwM_228.4673 Anthoceros agrestis HOM05D006582 ORTHO05D008313 1.6e-41 174.1 225 44.9
Hma1.2p1_0512F.1_g169380 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 7.9e-41 171.8 288 42.7
Pp3c14_24810 Physcomitrium patens HOM05D006582 ORTHO05D008313 2.5e-39 166.8 244 39.8
CiPaw.05G199600 Carya illinoinensis HOM05D006582 ORTHO05D008313 2.7e-33 146.7 116 62.1
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 5.3e-29 132.5 235 36.2
Hma1.2p1_0415F.1_g148000 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 3.5e-28 129.8 88 76.1
SHI19113 Sapria himalayana HOM05D006582 ORTHO05D008313 5.9e-20 102.4 74 67.6
SHI19111 Sapria himalayana HOM05D006582 ORTHO05D008313 1.8e-16 90.9 93 51.6
Rhsim03G0115100 Rhododendron simsii HOM05D006582 ORTHO05D023108 2.0e-15 87.4 135 43.0
SEGI_26283 Sequoiadendron giganteum HOM05D006582 ORTHO05D008313 4.4e-15 86.3 78 56.4
MD07G1135700 Malus domestica HOM05D006582 ORTHO05D008313 1.2e-09 68.2 79 57.0
SEGI_35321 Sequoiadendron giganteum HOM05D006582 ORTHO05D008313 8.8e-08 62.0 57 49.1


User provided reference genes

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