Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402018293 Solanum tuberosum HOM05D000039 ORTHO05D396406 7.3e-29 129.8 62 100.0
Sopen01g044510 Solanum pennellii HOM05D000039 ORTHO05D000815 1.7e-17 92.0 47 87.2
Solyc01g101050.3 Solanum lycopersicum HOM05D000039 ORTHO05D000815 3.7e-17 90.9 47 87.2
CAN.G1374.14 Capsicum annuum HOM05D000039 ORTHO05D000815 9.5e-13 76.3 49 77.6
Nitab4.5_0006589g0030 Nicotiana tabacum HOM05D000039 ORTHO05D000815 6.8e-11 70.1 51 66.7
Peaxi162Scf00195g00124 Petunia axillaris HOM05D000039 ORTHO05D000815 1.2e-10 69.3 50 66.0
CiPaw.08G152300 Carya illinoinensis HOM05D000039 ORTHO05D000815 3.7e-09 64.3 52 55.8
Nitab4.5_0001931g0140 Nicotiana tabacum HOM05D000039 ORTHO05D000815 3.7e-09 64.3 51 64.7
CiPaw.08G152100 Carya illinoinensis HOM05D000039 ORTHO05D000815 6.4e-09 63.5 52 53.8
Duzib177G0171 Durio zibethinus HOM05D000039 ORTHO05D000815 1.4e-08 62.4 48 62.5
Nitab4.5_0000007g0230 Nicotiana tabacum HOM05D000039 ORTHO05D000815 1.4e-08 62.4 50 58.0
Nitab4.5_0011231g0010 Nicotiana tabacum HOM05D000039 ORTHO05D000815 1.4e-08 62.4 50 58.0
Eucgr.J01618 Eucalyptus grandis HOM05D000039 ORTHO05D000815 5.4e-08 60.5 48 60.4
Eucgr.J01619 Eucalyptus grandis HOM05D000039 ORTHO05D000815 5.4e-08 60.5 48 60.4
Oeu056957.1 Olea europaea HOM05D000039 ORTHO05D000815 5.4e-08 60.5 47 55.3
CAN.G85.8 Capsicum annuum HOM05D000039 ORTHO05D000815 7.1e-08 60.1 50 58.0
Peaxi162Scf00006g10316 Petunia axillaris HOM05D000039 ORTHO05D000815 7.1e-08 60.1 50 58.0
Prupe.6G306500 Prunus persica HOM05D000039 ORTHO05D000815 7.1e-08 60.1 48 60.4
AUR62000453 Chenopodium quinoa HOM05D000039 ORTHO05D000815 9.2e-08 59.7 48 58.3
Eucgr.J01616 Eucalyptus grandis HOM05D000039 ORTHO05D000815 9.2e-08 59.7 48 60.4
Eucgr.L02416 Eucalyptus grandis HOM05D000039 ORTHO05D000815 9.2e-08 59.7 48 60.4
GSVIVG01031311001 Vitis vinifera HOM05D000039 ORTHO05D000815 9.2e-08 59.7 49 59.2
CiPaw.08G152000 Carya illinoinensis HOM05D000039 ORTHO05D000815 1.6e-07 58.9 51 54.9
MD12G1201400 Malus domestica HOM05D000039 ORTHO05D000815 1.6e-07 58.9 47 55.3
Thecc.05G327900 Theobroma cacao HOM05D000039 ORTHO05D000815 1.6e-07 58.9 48 60.4
CiPaw.08G152200 Carya illinoinensis HOM05D000039 ORTHO05D000815 2.1e-07 58.5 51 56.9
QL03p009379 Quercus lobata HOM05D000039 ORTHO05D000815 2.7e-07 58.2 48 56.2
QL03p009408 Quercus lobata HOM05D000039 ORTHO05D000815 2.7e-07 58.2 48 56.2
arahy.Tifrunner.gnm1.ann1.C70Y3X Arachis hypogaea HOM05D000044 ORTHO05D000051 3.5e-07 57.8 60 50.0
Cfa006751 Carpinus fangiana HOM05D000039 ORTHO05D000815 4.6e-07 57.4 51 54.9
EL10Ac4g09534 Beta vulgaris HOM05D000039 ORTHO05D000815 6.0e-07 57.0 52 50.0
Dinv30934 Davidia involucrata HOM05D000039 ORTHO05D000815 6.0e-07 57.0 50 54.0
Nn3g21879 Nelumbo nucifera HOM05D000039 ORTHO05D000815 6.0e-07 57.0 51 58.8
QL03p058180 Quercus lobata HOM05D000039 ORTHO05D000815 6.0e-07 57.0 49 57.1
Sopen12g008690 Solanum pennellii HOM05D000039 ORTHO05D000815 6.0e-07 57.0 50 56.0
Thecc.04G284300 Theobroma cacao HOM05D000039 ORTHO05D000815 6.0e-07 57.0 51 52.9
Actinidia06388 Actinidia chinensis HOM05D000039 ORTHO05D000815 7.8e-07 56.6 51 54.9
arahy.Tifrunner.gnm1.ann1.IE3GQ3 Arachis hypogaea HOM05D000044 ORTHO05D000051 7.8e-07 56.6 60 50.0
Medtr1g038680 Medicago truncatula HOM05D000039 ORTHO05D000815 7.8e-07 56.6 48 60.4
Solyc12g017870.2 Solanum lycopersicum HOM05D000039 ORTHO05D000815 7.8e-07 56.6 50 56.0
TPR.G4383 Trifolium pratense HOM05D000044 ORTHO05D000051 7.8e-07 56.6 61 47.5
GSVIVG01031312001 Vitis vinifera HOM05D000039 ORTHO05D000815 7.8e-07 56.6 49 53.1
Haze_04004 Corylus avellana HOM05D000039 ORTHO05D000815 1.0e-06 56.2 51 52.9
FvH4_6g08310 Fragaria vesca HOM05D000039 ORTHO05D000815 1.0e-06 56.2 48 54.2
FAN05G1361 Fragaria x ananassa HOM05D000039 ORTHO05D000815 1.0e-06 56.2 48 54.2
FAN14G0877 Fragaria x ananassa HOM05D000039 ORTHO05D000815 1.0e-06 56.2 48 54.2
Cfa006749 Carpinus fangiana HOM05D000039 ORTHO05D000815 1.3e-06 55.8 51 52.9
Cfa006750 Carpinus fangiana HOM05D000039 ORTHO05D000815 1.3e-06 55.8 51 52.9
RcHm_v2.0_Chr3g0458181 Rosa chinensis HOM05D000039 ORTHO05D000815 1.3e-06 55.8 48 56.2
Hund17473 Selenicereus undatus HOM05D000044 ORTHO05D002853 1.7e-06 55.5 58 46.6
DCAR_018251 Daucus carota HOM05D000039 ORTHO05D000815 2.3e-06 55.1 47 55.3
Eucgr.H03910 Eucalyptus grandis HOM05D000039 ORTHO05D000815 2.3e-06 55.1 47 53.2
MBI18_g28896_MAGBIO Magnolia biondii HOM05D000039 ORTHO05D000815 2.3e-06 55.1 56 55.4
Oeu062048.1 Olea europaea HOM05D000039 ORTHO05D000815 3.0e-06 54.7 49 53.1
AUR62006740 Chenopodium quinoa HOM05D000039 ORTHO05D000815 3.9e-06 54.3 50 54.0
Duzib052G0129 Durio zibethinus HOM05D000039 ORTHO05D000815 3.9e-06 54.3 51 52.9
Duzib151G0083 Durio zibethinus HOM05D000039 ORTHO05D000815 3.9e-06 54.3 51 51.0
QL03p009336 Quercus lobata HOM05D000039 ORTHO05D000815 3.9e-06 54.3 51 52.9
QL03p009343 Quercus lobata HOM05D000039 ORTHO05D000815 3.9e-06 54.3 51 52.9
QL03p009560 Quercus lobata HOM05D000039 ORTHO05D000815 3.9e-06 54.3 48 54.2
Phvul.007G082600 Phaseolus vulgaris HOM05D000044 ORTHO05D002853 5.1e-06 53.9 58 50.0
EL10Ac1g01598 Beta vulgaris HOM05D000044 ORTHO05D002853 6.6e-06 53.5 58 46.6
AUR62000384 Chenopodium quinoa HOM05D000039 ORTHO05D000815 6.6e-06 53.5 50 54.0
QL03p009366 Quercus lobata HOM05D000039 ORTHO05D000815 6.6e-06 53.5 48 54.2
QL03p009549 Quercus lobata HOM05D000039 ORTHO05D000815 6.6e-06 53.5 48 54.2
PGSC0003DMG400020388 Solanum tuberosum HOM05D000039 ORTHO05D000815 6.6e-06 53.5 50 54.0
TPR.G29798 Trifolium pratense HOM05D000039 ORTHO05D000815 6.6e-06 53.5 49 53.1
Ah.02g125300 Amaranthus hybridus HOM05D000039 ORTHO05D000815 8.6e-06 53.1 48 54.2
arahy.Tifrunner.gnm1.ann1.E75BK7 Arachis hypogaea HOM05D000044 ORTHO05D000051 8.6e-06 53.1 53 50.9
Eucgr.H03915 Eucalyptus grandis HOM05D000039 ORTHO05D000815 8.6e-06 53.1 47 51.1
Lj1A11T68 Lonicera japonica HOM05D000039 ORTHO05D000815 8.6e-06 53.1 51 52.9
Lj5C321T10 Lonicera japonica HOM05D000039 ORTHO05D000815 8.6e-06 53.1 55 54.5
Oeu026312.2 Olea europaea HOM05D000039 ORTHO05D000815 8.6e-06 53.1 53 47.2
Psat2g068760 Pisum sativum HOM05D000039 ORTHO05D000815 8.6e-06 53.1 48 54.2
Psat6g099960 Pisum sativum HOM05D000039 ORTHO05D000815 8.6e-06 53.1 48 54.2
QL03p009430 Quercus lobata HOM05D000039 ORTHO05D000815 8.6e-06 53.1 49 53.1
QL03p009586 Quercus lobata HOM05D000039 ORTHO05D000815 8.6e-06 53.1 49 53.1
SEGI_22001 Sequoiadendron giganteum HOM05D000044 ORTHO05D000051 8.6e-06 53.1 58 50.0


User provided reference genes

Program Settings