Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 4.7e-109 397.9 203 100.0
PGSC0003DMG403018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 3.5e-104 381.7 203 95.6
Sopen04g026100 Solanum pennellii HOM05D006959 ORTHO05D008808 4.0e-100 368.2 203 93.6
Nitab4.5_0002625g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 1.3e-79 300.1 206 79.1
CAN.G46.11 Capsicum annuum HOM05D006959 ORTHO05D008808 1.7e-79 299.7 203 81.3
Peaxi162Scf00066g00072 Petunia axillaris HOM05D006959 ORTHO05D008808 5.8e-75 284.6 203 76.8
Nitab4.5_0008327g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 3.7e-74 282.0 233 71.2
Cc10_g14010 Coffea canephora HOM05D006959 ORTHO05D008808 1.2e-64 250.4 201 65.2
Lsat_1_v5_gn_1_10340 Lactuca sativa HOM05D006959 ORTHO05D008808 6.0e-64 248.1 209 60.8
Oeu026374.1 Olea europaea HOM05D006959 ORTHO05D008808 9.6e-62 240.7 216 58.3
Hma1.2p1_0159F.1_g070330 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 1.2e-61 240.4 211 60.7
Migut.C01073 Erythranthe guttata HOM05D006959 ORTHO05D008808 3.6e-61 238.8 211 63.5
CiPaw.16G022000 Carya illinoinensis HOM05D006959 ORTHO05D008808 6.2e-61 238.0 214 60.3
TAR381G0659 Trochodendron aralioides HOM05D006959 ORTHO05D008808 8.1e-61 237.7 209 58.4
Atru.chr13.1599 Acer truncatum HOM05D006959 ORTHO05D008808 2.4e-60 236.1 204 61.8
Lj4A666T17 Lonicera japonica HOM05D006959 ORTHO05D008808 2.4e-60 236.1 207 61.8
FvH4_2g28060 Fragaria vesca HOM05D006959 ORTHO05D008808 4.0e-60 235.3 221 57.5
QL09p031413 Quercus lobata HOM05D006959 ORTHO05D008808 5.2e-60 235.0 215 58.1
QL09p031824 Quercus lobata HOM05D006959 ORTHO05D008808 6.8e-60 234.6 215 58.1
FAN24G0315 Fragaria x ananassa HOM05D006959 ORTHO05D008808 8.9e-60 234.2 221 57.5
FAN27G3284 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.5e-59 233.4 220 56.8
Lj4A663T33 Lonicera japonica HOM05D006959 ORTHO05D008808 2.0e-59 233.0 202 62.4
Thecc.08G134700 Theobroma cacao HOM05D006959 ORTHO05D008808 3.4e-59 232.3 208 59.1
Cfa018414 Carpinus fangiana HOM05D006959 ORTHO05D008808 4.4e-59 231.9 215 56.7
TWI32G1355 Tripterygium wilfordii HOM05D006959 ORTHO05D008808 2.2e-58 229.6 212 60.4
Ciclev10002542m.g Citrus clementina HOM05D006959 ORTHO05D008808 2.9e-58 229.2 201 62.7
HanXRQChr02g0045531 Helianthus annuus HOM05D006959 ORTHO05D008808 3.8e-58 228.8 201 61.7
Potri.002G076700 Populus trichocarpa HOM05D006959 ORTHO05D008808 3.8e-58 228.8 206 60.7
Nn1g08935 Nelumbo nucifera HOM05D006959 ORTHO05D008808 8.4e-58 227.6 213 58.2
Manes.18G084200 Manihot esculenta HOM05D006959 ORTHO05D008808 1.1e-57 227.3 211 60.2
RcHm_v2.0_Chr6g0297021 Rosa chinensis HOM05D006959 ORTHO05D008808 1.4e-57 226.9 217 56.2
Actinidia24726 Actinidia chinensis HOM05D006959 ORTHO05D008808 2.4e-57 226.1 178 65.2
Gohir.A05G238900 Gossypium hirsutum HOM05D006959 ORTHO05D008808 1.2e-56 223.8 212 58.0
Duzib093G2176 Durio zibethinus HOM05D006959 ORTHO05D008808 2.7e-56 222.6 212 59.9
Solyc04g058200.3 Solanum lycopersicum HOM05D006959 ORTHO05D008808 3.5e-56 222.2 114 100.0
PGR042G0886 Punica granatum HOM05D006959 ORTHO05D008808 6.0e-56 221.5 221 53.8
Gohir.D05G240800 Gossypium hirsutum HOM05D006959 ORTHO05D008808 1.0e-55 220.7 213 58.2
Gorai.009G249600 Gossypium raimondii HOM05D006959 ORTHO05D008808 1.0e-55 220.7 213 58.2
Sed0020251 Sechium edule HOM05D006959 ORTHO05D008808 1.7e-55 219.9 209 57.4
Actinidia15201 Actinidia chinensis HOM05D006959 ORTHO05D008808 3.9e-55 218.8 211 55.5
MD15G1131600 Malus domestica HOM05D006959 ORTHO05D008808 6.6e-55 218.0 207 56.5
Phvul.001G066600 Phaseolus vulgaris HOM05D006959 ORTHO05D008808 2.5e-54 216.1 201 56.2
VMungo0647G0259 Vigna mungo HOM05D006959 ORTHO05D008808 2.5e-54 216.1 201 57.2
CsaV3_6G033990 Cucumis sativus L. HOM05D006959 ORTHO05D008808 5.6e-54 214.9 208 56.7
Haze_17647 Corylus avellana HOM05D006959 ORTHO05D008808 7.3e-54 214.5 231 52.8
THA.LOC104813687 Tarenaya hassleriana HOM05D006959 ORTHO05D008808 9.6e-54 214.2 217 53.9
MSTRG.1406 Avicennia marina HOM05D006959 ORTHO05D008808 1.3e-53 213.8 213 54.5
Cpa.g.sc64.158 Carica papaya HOM05D006959 ORTHO05D008808 1.6e-53 213.4 207 58.5
FAN20G3215 Fragaria x ananassa HOM05D006959 ORTHO05D008808 2.1e-53 213.0 220 54.5
CDE06G1932 Ceratophyllum demersum HOM05D006959 ORTHO05D008808 2.8e-53 212.6 190 58.9
MELO3C008461.2 Cucumis melo HOM05D006959 ORTHO05D008808 4.8e-53 211.8 222 55.0
COL.COLO4_32963 Corchorus olitorius HOM05D006959 ORTHO05D008808 6.2e-53 211.5 208 56.7
Hund17359 Selenicereus undatus HOM05D006959 ORTHO05D008808 6.2e-53 211.5 202 56.4
GSVIVG01008793001 Vitis vinifera HOM05D006959 ORTHO05D008808 8.1e-53 211.1 167 64.7
Eucgr.F03861 Eucalyptus grandis HOM05D006959 ORTHO05D008808 1.1e-52 210.7 224 54.0
SalBow7G4180 Salvia bowleyana HOM05D006959 ORTHO05D008808 2.4e-52 209.5 233 51.9
Aqoxy6G00289 Aquilegia oxysepala HOM05D006959 ORTHO05D008808 1.2e-51 207.2 148 66.9
Glyma.13G035500 Glycine max HOM05D006959 ORTHO05D008808 2.6e-51 206.1 204 54.9
MBI03_g13506_MAGBIO Magnolia biondii HOM05D006959 ORTHO05D008808 2.6e-51 206.1 220 54.5
arahy.Tifrunner.gnm1.ann1.P1MCWD Arachis hypogaea HOM05D006959 ORTHO05D008808 1.9e-49 199.9 205 54.1
Thhalv10019109m.g Eutrema salsugineum HOM05D006959 ORTHO05D008808 1.9e-49 199.9 221 51.1
AUR62007695 Chenopodium quinoa HOM05D006959 ORTHO05D008808 2.4e-49 199.5 218 53.7
AUR62013448 Chenopodium quinoa HOM05D006959 ORTHO05D008808 2.4e-49 199.5 218 52.8
PSO528G0249 Papaver somniferum HOM05D006959 ORTHO05D008808 2.4e-49 199.5 145 66.9
AT1G77230 Arabidopsis thaliana HOM05D006959 ORTHO05D008808 4.2e-49 198.7 218 53.2
Sp5g32400 Schrenkiella parvula HOM05D006959 ORTHO05D008808 4.2e-49 198.7 214 53.3
HPP92_016131 Vanilla planifolia HOM05D006959 ORTHO05D008808 5.4e-49 198.4 199 52.8
ClCG08G006070 Citrullus lanatus HOM05D006959 ORTHO05D008808 9.3e-49 197.6 245 46.9
Os02g0553500 Oryza sativa ssp. japonica HOM05D006959 ORTHO05D008808 9.3e-49 197.6 202 54.5
CARHR070700 Cardamine hirsuta HOM05D006959 ORTHO05D008808 1.6e-48 196.8 201 51.7
PSO170G0856 Papaver somniferum HOM05D006959 ORTHO05D008808 1.6e-48 196.8 233 50.2
Zm00001eb181980 Zea mays HOM05D006959 ORTHO05D008808 2.1e-48 196.4 197 55.3
AL2G37400 Arabidopsis lyrata HOM05D006959 ORTHO05D008808 1.3e-47 193.7 213 52.1
BcaC08g45484 Brassica carinata HOM05D006959 ORTHO05D008808 1.7e-47 193.4 204 52.0
C06p31380 Brassica napus HOM05D006959 ORTHO05D008808 1.7e-47 193.4 201 53.7
BolC6t38274H Brassica oleracea HOM05D006959 ORTHO05D008808 3.0e-47 192.6 201 53.7
CANSAT64G0796 Cannabis sativa HOM05D006959 ORTHO05D008808 6.6e-47 191.4 205 51.7
A08p07140 Brassica napus HOM05D006959 ORTHO05D008808 1.1e-46 190.7 201 53.7
BraA08t32726Z Brassica rapa HOM05D006959 ORTHO05D008808 1.1e-46 190.7 201 53.7
Sabra02G0060200 Salix brachista HOM05D006959 ORTHO05D008808 1.9e-46 189.9 278 45.0
CSS0019542 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 9.6e-46 187.6 209 51.2
EL10Ac1g01371 Beta vulgaris HOM05D006959 ORTHO05D008808 1.6e-45 186.8 246 48.4
Carub.0002s2410 Capsella rubella HOM05D006959 ORTHO05D008808 2.1e-45 186.4 216 49.5
Hma1.2p1_0159F.1_g070340 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 6.2e-45 184.9 181 55.8
Medtr1g029720 Medicago truncatula HOM05D006959 ORTHO05D008808 1.5e-43 180.3 203 49.8
Lj1g0023549 Lotus japonicus HOM05D006959 ORTHO05D008808 4.5e-43 178.7 210 49.0
ATR0584G163 Amborella trichopoda HOM05D006959 ORTHO05D008808 9.9e-43 177.6 201 48.3
arahy.Tifrunner.gnm1.ann1.84IAJ5 Arachis hypogaea HOM05D006959 ORTHO05D008808 1.3e-42 177.2 131 67.9
Lalb_Chr04g0253591 Lupinus albus HOM05D006959 ORTHO05D008808 2.9e-42 176.0 203 48.8
Aa31LG4G7230 Aethionema arabicum HOM05D006959 ORTHO05D008808 1.9e-41 173.3 233 45.5
BcaB02g07099 Brassica carinata HOM05D006959 ORTHO05D008808 3.0e-39 166.0 213 45.5
Glyma.14G156700 Glycine max HOM05D006959 ORTHO05D008808 4.3e-38 162.2 218 43.6
Ca_12642_v3 Cicer arietinum L. HOM05D006959 ORTHO05D008808 7.6e-35 151.4 223 44.4
DCAR_028201 Daucus carota HOM05D006959 ORTHO05D008808 6.5e-34 148.3 204 43.6
Psat6g040840 Pisum sativum HOM05D006959 ORTHO05D008808 1.2e-32 144.1 142 55.6
Dinv27258 Davidia involucrata HOM05D006959 ORTHO05D008808 4.3e-30 135.6 124 58.1
CSS0036249 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 9.0e-28 127.9 129 53.5
CSS0009415 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 2.6e-27 126.3 135 54.1
TPR.G879 Trifolium pratense HOM05D006959 ORTHO05D008808 3.2e-25 119.4 84 71.4
SGA_v2.0_scaffold52G18911 Striga asiatica HOM05D006959 ORTHO05D008808 7.9e-24 114.8 126 52.4
Mapoly0050s0106 Marchantia polymorpha HOM05D006959 ORTHO05D008808 2.3e-23 113.2 87 60.9
Prupe.1G487500 Prunus persica HOM05D006959 ORTHO05D008808 1.8e-20 103.6 216 38.0
RcHm_v2.0_Chr6g0296961 Rosa chinensis HOM05D006959 ORTHO05D008808 2.4e-20 103.2 75 66.7
Sc26g0002850 Simmondsia chinensis HOM05D006959 ORTHO05D008808 2.1e-16 90.1 215 34.0
Cre12.g510034 Chlamydomonas reinhardtii HOM05D006959 ORTHO05D008808 1.0e-15 87.8 137 42.3
RcHm_v2.0_Chr6g0296981 Rosa chinensis HOM05D006959 ORTHO05D008808 4.3e-14 82.4 55 70.9
SEGI_05118 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 7.4e-14 81.6 78 47.4
SEGI_04582 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 4.8e-13 79.0 78 46.2
FAN24G1784 Fragaria x ananassa HOM05D006959 ORTHO05D008808 2.2e-10 70.1 47 66.0
FAN27G2285 Fragaria x ananassa HOM05D006959 ORTHO05D008808 4.7e-08 62.4 106 37.7
Lj4g0012280 Lotus japonicus HOM05D003946 ORTHO05D004485 1.0e-07 61.2 124 34.7
Phvul.008G125199 Phaseolus vulgaris HOM05D003946 ORTHO05D004485 3.0e-07 59.7 107 34.6
VMungo1383G2940 Vigna mungo HOM05D003946 ORTHO05D004485 3.0e-07 59.7 107 34.6
Lalb_Chr07g0193951 Lupinus albus HOM05D003946 ORTHO05D004485 3.9e-07 59.3 107 33.6
TPR.G23301 Trifolium pratense HOM05D003946 ORTHO05D004485 5.1e-07 58.9 137 30.7
Medtr7g059150 Medicago truncatula HOM05D003946 ORTHO05D004485 1.1e-06 57.8 145 29.7
BcaB06g27947 Brassica carinata HOM05D003946 ORTHO05D004485 7.4e-06 55.1 151 29.1
Ca_01529_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 9.7e-06 54.7 141 29.8


User provided reference genes

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