Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 0.0e+00 1251.9 715 100.0
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 0.0e+00 1140.6 724 88.0
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.7e-254 882.9 708 74.0
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 7.3e-250 867.5 731 70.9
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 5.4e-245 851.3 728 69.2
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 2.1e-220 769.6 729 66.4
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 8.5e-198 694.5 740 59.1
Solyc02g081640.4 Solanum lycopersicum HOM05D003739 ORTHO05D003996 1.2e-172 610.9 412 80.3
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 2.3e-126 457.2 746 42.4
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 4.9e-113 412.9 759 39.5
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 1.4e-104 384.8 755 38.7
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 3.9e-102 376.7 766 36.6
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 3.7e-92 343.6 771 36.3
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 2.4e-83 314.3 734 39.5
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 5.0e-81 306.6 761 36.1
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 1.5e-77 295.0 756 33.3
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.8e-75 288.1 802 32.5
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 2.7e-74 284.3 767 33.5
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 2.7e-74 284.3 792 33.1
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 3.5e-74 283.9 714 35.2
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 7.7e-74 282.7 737 35.8
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 8.5e-73 279.3 772 32.0
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 8.0e-71 272.7 726 33.9
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 3.0e-70 270.8 730 32.3
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 8.8e-70 269.2 732 34.0
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 7.5e-69 266.2 720 35.7
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 4.1e-67 260.4 732 32.1
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 1.2e-66 258.8 797 31.7
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 7.7e-66 256.1 658 34.5
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 1.2e-61 242.3 687 32.5
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 2.6e-61 241.1 643 33.4
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 3.4e-61 240.7 756 30.4
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 2.8e-60 237.7 570 35.6
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 6.3e-60 236.5 718 34.8
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 3.1e-59 234.2 719 33.9
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 1.6e-58 231.9 313 45.7
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 1.3e-57 228.8 454 37.7
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 2.3e-57 228.0 311 45.0
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 1.1e-56 225.7 559 34.5
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 6.1e-55 219.9 726 32.2
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 2.3e-54 218.0 642 32.1
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 2.3e-54 218.0 683 32.1
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 4.0e-54 217.2 725 31.6
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 6.8e-54 216.5 397 36.8
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 6.8e-54 216.5 822 28.0
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 8.9e-54 216.1 490 38.4
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 8.9e-54 216.1 764 28.9
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 2.0e-53 214.9 291 45.7
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 2.6e-53 214.5 809 29.7
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 3.4e-53 214.2 581 32.7
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 4.4e-53 213.8 730 29.6
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 4.4e-53 213.8 740 29.6
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 9.8e-53 212.6 685 30.9
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 2.2e-52 211.5 750 29.5
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 3.2e-51 207.6 752 30.1
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 2.7e-50 204.5 302 45.7
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 2.7e-50 204.5 742 30.2
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 4.6e-50 203.8 746 29.9
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 3.0e-49 201.1 767 30.2
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 5.0e-49 200.3 460 37.2
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 6.6e-49 199.9 763 29.1
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 1.9e-48 198.4 710 29.4
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 7.3e-48 196.4 675 32.0
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 1.2e-47 195.7 318 41.2
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 2.1e-47 194.9 262 46.2
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 1.8e-46 191.8 732 32.1
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 4.0e-46 190.7 692 30.1
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 5.2e-46 190.3 375 37.1
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 6.8e-46 189.9 675 31.6
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 2.6e-45 188.0 383 36.3
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 5.8e-45 186.8 689 29.3
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 7.5e-45 186.4 702 30.1
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 7.5e-45 186.4 699 29.5
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 9.8e-45 186.0 773 31.3
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 2.2e-44 184.9 809 28.4
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 2.9e-44 184.5 739 29.6
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 3.7e-44 184.1 270 46.3
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 2.4e-43 181.4 210 51.9
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 4.1e-43 180.6 692 30.2
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 6.0e-42 176.8 374 37.4
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 1.1e-40 172.6 146 63.0
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 5.6e-40 170.2 158 57.0
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 1.8e-38 165.2 380 39.2
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 6.8e-38 163.3 272 43.0
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 1.5e-37 162.2 218 46.3
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 2.0e-37 161.8 189 48.1
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 3.4e-37 161.0 189 48.1
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 3.4e-37 161.0 370 33.8
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 4.4e-37 160.6 332 38.6
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 9.9e-37 159.5 266 41.0
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 1.3e-36 159.1 190 49.5
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 1.3e-36 159.1 679 27.4
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 2.9e-36 157.9 807 26.9
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 3.7e-36 157.5 334 39.2
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 6.4e-36 156.8 274 38.3
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 1.4e-35 155.6 383 34.2
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 2.4e-35 154.8 279 43.4
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 4.1e-35 154.1 184 48.9
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 2.7e-34 151.4 192 45.8
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 3.5e-34 151.0 379 34.6
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 1.0e-33 149.4 251 40.6
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 1.7e-33 148.7 214 43.0
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 2.3e-33 148.3 367 34.3
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 2.3e-33 148.3 186 43.5
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 3.0e-33 147.9 216 44.0
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 3.9e-33 147.5 178 47.2
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 6.6e-33 146.7 208 41.8
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 3.3e-32 144.4 215 43.7
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 1.6e-31 142.1 246 37.8
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 3.6e-31 141.0 189 46.0
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 3.1e-30 137.9 479 27.6
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 4.0e-30 137.5 583 28.3
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 2.0e-29 135.2 283 36.0
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 2.9e-28 131.3 236 38.6
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 1.9e-27 128.6 272 35.3
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 1.9e-27 128.6 658 27.4
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 3.2e-27 127.9 115 54.8
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 1.2e-26 125.9 273 35.2
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 2.1e-26 125.2 251 39.8
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 4.6e-26 124.0 180 42.2
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 7.8e-26 123.2 222 38.7
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 6.6e-25 120.2 179 41.9
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 1.1e-24 119.4 686 25.7
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 3.3e-24 117.9 263 33.8
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 5.6e-24 117.1 555 27.7
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 2.8e-23 114.8 285 30.9
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 2.4e-22 111.7 143 46.2
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 6.9e-22 110.2 381 31.2
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 1.2e-21 109.4 182 38.5
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 1.5e-21 109.0 141 48.2
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 7.6e-21 106.7 465 26.9
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 1.7e-20 105.5 735 25.2
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 6.4e-20 103.6 245 34.7
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.4e-19 100.5 193 34.2
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.2e-18 99.4 104 46.2
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.2e-18 99.4 104 46.2
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 1.2e-18 99.4 256 29.3
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 1.0e-17 96.3 108 49.1
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 1.3e-17 95.9 126 41.3
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 2.3e-17 95.1 201 31.8
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.1e-16 92.8 439 25.5
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.9e-16 92.0 61 68.9
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 1.6e-15 89.0 159 40.9
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 6.2e-15 87.0 112 39.3
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 8.1e-15 86.7 218 33.9
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 1.2e-13 82.8 136 39.0
Sc19g0000570 Simmondsia chinensis HOM05D003739 ORTHO05D003996 2.0e-13 82.0 560 27.1
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.4e-13 81.3 103 41.7
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 4.5e-13 80.9 91 42.9
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 1.9e-11 75.5 445 25.4
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 7.1e-11 73.6 56 64.3
Actinidia05492 Actinidia chinensis HOM05D003739 ORTHO05D003996 3.0e-09 68.2 91 41.8
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 8.7e-09 66.6 250 26.4
Glyma.16G093750 Glycine max HOM05D003739 ORTHO05D003996 1.9e-08 65.5 87 43.7
Hma1.2p1_0088F.1_g045220 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 4.3e-08 64.3 56 57.1
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 5.6e-08 63.9 55 54.5
TPR.G20410 Trifolium pratense HOM05D003739 ORTHO05D003996 1.1e-06 59.7 192 30.7
FAN20G1594 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.4e-06 59.3 78 47.4
SMO293G0020 Selaginella moellendorffii HOM05D027797 ORTHO05D003996 2.4e-06 58.5 208 29.8
Thhalv10000433m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 3.1e-06 58.2 60 46.7


User provided reference genes

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