Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 6.7e-48 193.7 102 100.0
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 7.0e-45 183.7 101 95.0
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 7.0e-45 183.7 101 95.0
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 3.5e-44 181.4 101 93.1
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 1.3e-43 179.5 101 92.1
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 2.2e-38 162.2 101 82.2
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 3.4e-23 111.7 104 60.6
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 6.3e-22 107.5 104 57.7
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 8.3e-22 107.1 106 58.5
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 8.3e-22 107.1 101 57.4
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 2.4e-21 105.5 101 58.4
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 1.2e-20 103.2 104 54.8
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 1.6e-20 102.8 101 54.5
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 2.0e-20 102.4 104 53.8
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 2.7e-20 102.1 104 58.7
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 4.5e-20 101.3 104 58.7
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 5.9e-20 100.9 104 56.7
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 1.0e-19 100.1 104 55.8
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 2.3e-19 99.0 104 52.9
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 2.3e-19 99.0 104 52.9
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 2.9e-19 98.6 104 55.8
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 2.9e-19 98.6 104 51.9
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 6.6e-19 97.4 101 54.5
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 8.6e-19 97.1 104 55.8
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.1e-18 96.7 101 52.5
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 1.1e-18 96.7 104 53.8
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 1.1e-18 96.7 105 53.3
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 1.5e-18 96.3 104 53.8
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 3.3e-18 95.1 101 55.4
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 3.3e-18 95.1 104 52.9
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 7.3e-18 94.0 101 53.5
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 9.5e-18 93.6 104 53.8
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 9.5e-18 93.6 104 49.0
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 1.2e-17 93.2 106 49.1
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 1.2e-17 93.2 101 51.5
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 1.6e-17 92.8 101 50.5
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 1.6e-17 92.8 101 51.5
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 1.6e-17 92.8 101 50.5
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 1.6e-17 92.8 102 53.9
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.1e-17 92.4 103 48.5
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 2.8e-17 92.0 104 52.9
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 3.6e-17 91.7 101 52.5
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 3.6e-17 91.7 101 54.5
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 3.6e-17 91.7 101 49.5
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 3.6e-17 91.7 101 53.5
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 4.7e-17 91.3 104 50.0
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 4.7e-17 91.3 106 53.8
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 4.7e-17 91.3 107 47.7
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 4.7e-17 91.3 104 50.0
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 8.0e-17 90.5 101 50.5
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 8.0e-17 90.5 101 50.5
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 1.0e-16 90.1 105 49.5
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 1.0e-16 90.1 94 52.1
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 1.0e-16 90.1 106 49.1
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 1.0e-16 90.1 102 53.9
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 1.0e-16 90.1 101 47.5
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 1.0e-16 90.1 105 52.4
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.4e-16 89.7 105 53.3
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 1.4e-16 89.7 106 51.9
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 1.8e-16 89.4 103 48.5
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.3e-16 89.0 104 51.0
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 2.3e-16 89.0 102 52.0
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 3.0e-16 88.6 106 49.1
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 3.0e-16 88.6 102 51.0
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 4.0e-16 88.2 105 48.6
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 5.2e-16 87.8 101 48.5
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 5.2e-16 87.8 102 50.0
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 5.2e-16 87.8 104 47.1
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 5.2e-16 87.8 106 44.3
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 6.8e-16 87.4 101 50.5
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 6.8e-16 87.4 101 52.5
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 8.9e-16 87.0 101 50.5
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 1.2e-15 86.7 101 50.5
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 1.2e-15 86.7 104 50.0
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 1.5e-15 86.3 101 54.5
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 1.5e-15 86.3 101 52.5
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 2.6e-15 85.5 103 47.6
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 3.4e-15 85.1 104 52.9
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 4.4e-15 84.7 105 49.5
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 9.8e-15 83.6 102 49.0
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 3.7e-14 81.6 101 45.5
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 3.7e-14 81.6 101 45.5
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 4.9e-14 81.3 101 48.5
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 4.9e-14 81.3 107 47.7
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 4.9e-14 81.3 101 46.5
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 8.3e-14 80.5 101 46.5
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 8.3e-14 80.5 105 50.5
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 8.3e-14 80.5 102 49.0
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 1.1e-13 80.1 101 47.5
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 1.1e-13 80.1 101 48.5
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 1.1e-13 80.1 101 48.5
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 1.4e-13 79.7 106 45.3
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 1.4e-13 79.7 106 51.9
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 1.8e-13 79.3 101 51.5
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 2.4e-13 79.0 101 45.5
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 2.4e-13 79.0 101 45.5
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 2.4e-13 79.0 101 47.5
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 3.2e-13 78.6 101 45.5
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 4.1e-13 78.2 101 49.5
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 5.4e-13 77.8 102 45.1
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 5.4e-13 77.8 101 44.6
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 5.4e-13 77.8 106 47.2
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 7.0e-13 77.4 104 46.2
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 9.2e-13 77.0 102 46.1
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 1.6e-12 76.3 104 46.2
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 2.0e-12 75.9 102 44.1
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 6.0e-12 74.3 101 42.6
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 1.0e-11 73.6 101 42.6
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 1.0e-11 73.6 101 42.6
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 1.0e-11 73.6 101 42.6
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 1.7e-11 72.8 101 44.6
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.7e-11 72.8 103 42.7
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 2.3e-11 72.4 101 40.6
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 3.9e-11 71.6 101 43.6
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 5.0e-11 71.2 101 41.6
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 6.6e-11 70.9 101 46.5
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 5.6e-10 67.8 101 45.5
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 2.8e-09 65.5 104 43.3
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 3.6e-09 65.1 104 43.3
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 6.2e-09 64.3 102 45.1
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 1.1e-08 63.5 101 42.6
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 1.1e-08 63.5 101 44.6
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 1.2e-07 60.1 104 39.4
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 1.2e-07 60.1 104 39.4
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 1.2e-07 60.1 104 39.4
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 2.9e-06 55.5 104 36.5


User provided reference genes

Program Settings