Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 8.7e-226 786.6 377 100.0
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 1.8e-210 735.7 379 94.7
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 5.7e-209 730.7 379 94.2
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.3e-202 709.5 377 89.7
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 2.5e-201 705.3 377 89.4
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 1.4e-167 593.2 357 79.3
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 1.8e-167 592.8 375 76.0
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 5.7e-161 571.2 380 75.8
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 2.8e-160 568.9 361 74.5
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 6.3e-160 567.8 358 75.1
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 1.4e-159 566.6 391 69.3
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 1.6e-158 563.1 387 69.8
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 3.5e-158 562.0 377 72.9
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 1.0e-157 560.5 360 73.1
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 1.7e-157 559.7 381 71.1
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 2.9e-157 558.9 381 69.8
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 3.8e-157 558.5 385 69.1
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 5.0e-157 558.1 377 71.1
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 2.1e-155 552.7 339 76.7
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 2.1e-155 552.7 381 69.0
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 1.4e-154 550.1 364 71.7
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 1.8e-154 549.7 381 69.3
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 3.0e-154 548.9 379 68.6
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 4.0e-154 548.5 355 73.5
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 4.0e-154 548.5 358 73.7
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 5.2e-154 548.1 364 71.4
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 8.9e-154 547.4 374 68.4
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.0e-153 546.2 364 71.4
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 2.6e-153 545.8 372 69.4
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 9.8e-153 543.9 373 68.9
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 9.8e-153 543.9 358 72.6
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 2.9e-152 542.3 374 67.6
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 4.9e-152 541.6 361 71.5
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 8.3e-152 540.8 367 69.8
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 8.3e-152 540.8 361 70.9
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 1.8e-151 539.7 390 67.4
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 2.4e-151 539.3 367 69.5
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 3.2e-151 538.9 359 71.0
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 5.4e-151 538.1 387 67.2
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 5.4e-151 538.1 373 67.6
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 9.2e-151 537.3 359 71.0
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 9.2e-151 537.3 375 67.7
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 1.2e-150 537.0 379 66.8
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 1.2e-150 537.0 357 70.3
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 1.6e-150 536.6 390 66.2
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 2.0e-150 536.2 389 66.8
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 2.0e-150 536.2 372 69.1
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 3.5e-150 535.4 385 67.3
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 4.6e-150 535.0 391 66.8
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 4.6e-150 535.0 389 66.3
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 4.6e-150 535.0 381 66.7
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 4.6e-150 535.0 381 66.7
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 1.0e-149 533.9 362 69.9
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 2.3e-149 532.7 391 66.5
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 3.0e-149 532.3 361 70.1
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 3.0e-149 532.3 389 66.1
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 3.0e-149 532.3 389 66.1
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 6.6e-149 531.2 375 68.0
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 8.6e-149 530.8 363 69.1
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 1.1e-148 530.4 345 73.3
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 1.1e-148 530.4 361 69.5
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 1.1e-148 530.4 363 69.7
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 1.5e-148 530.0 362 70.2
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 1.9e-148 529.6 338 74.0
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 1.9e-148 529.6 362 69.9
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 5.6e-148 528.1 358 69.3
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 1.6e-147 526.6 398 64.6
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 2.8e-147 525.8 348 72.7
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 2.8e-147 525.8 360 70.3
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 2.8e-147 525.8 338 72.8
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 3.6e-147 525.4 393 66.4
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 4.7e-147 525.0 391 65.0
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.4e-146 523.5 338 72.8
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 8.9e-146 520.8 354 70.3
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 2.0e-145 519.6 382 65.4
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 2.0e-145 519.6 381 66.4
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 9.8e-145 517.3 360 66.9
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 2.2e-144 516.2 386 65.0
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 6.4e-144 514.6 376 65.2
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 2.4e-143 512.7 357 66.9
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.4e-143 512.7 357 66.9
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 4.1e-143 511.9 381 65.6
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 1.6e-142 510.0 375 65.3
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 2.0e-142 509.6 349 68.5
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 2.7e-142 509.2 357 69.5
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 4.6e-142 508.4 357 65.5
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.0e-141 507.3 360 68.1
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.0e-141 507.3 360 68.1
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 2.3e-141 506.1 306 77.1
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 5.0e-141 505.0 336 69.6
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 5.0e-141 505.0 345 67.5
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 8.6e-141 504.2 369 65.3
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.1e-140 503.8 373 66.0
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 1.5e-140 503.4 365 66.6
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 3.3e-140 502.3 355 68.2
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 9.5e-140 500.7 320 70.6
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.4e-138 496.9 309 75.1
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 1.2e-137 493.8 362 66.6
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 1.2e-137 493.8 356 66.6
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 2.6e-137 492.7 335 69.9
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 2.6e-137 492.7 361 65.7
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 2.6e-137 492.7 385 62.9
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 3.4e-137 492.3 337 69.1
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 4.4e-137 491.9 381 64.6
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 7.5e-137 491.1 358 64.2
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 1.3e-136 490.3 338 68.9
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 3.7e-136 488.8 369 64.2
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 2.4e-135 486.1 338 69.5
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 2.3e-133 479.6 338 67.5
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 2.8e-131 472.6 338 66.0
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 2.3e-130 469.5 343 65.6
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 4.0e-130 468.8 377 61.3
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 7.1e-127 458.0 355 63.9
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 3.5e-126 455.7 379 61.7
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 1.2e-123 447.2 380 58.9
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 8.1e-123 444.5 393 57.8
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 2.6e-121 439.5 343 62.4
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 5.8e-121 438.3 338 62.7
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 4.2e-119 432.2 364 58.2
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 6.0e-118 428.3 359 57.4
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 1.6e-115 420.2 320 61.2
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 2.8e-115 419.5 348 60.1
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 6.2e-115 418.3 299 64.9
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 1.1e-111 407.5 332 60.2
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 3.5e-110 402.5 322 59.6
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.3e-109 400.6 281 66.5
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 7.4e-108 394.8 246 72.0
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 1.4e-103 380.6 346 55.2
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 3.2e-103 379.4 206 85.9
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.6e-102 377.1 304 60.2
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 1.1e-100 370.9 363 53.4
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 1.6e-99 367.1 314 57.6
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 3.4e-97 359.4 199 81.9
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 5.8e-97 358.6 198 80.3
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 1.8e-90 337.0 231 73.2
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 1.9e-84 317.0 219 67.1
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 6.3e-83 312.0 177 79.1
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 5.5e-79 298.9 287 54.4
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 3.7e-75 286.2 232 60.8
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 6.9e-74 282.0 397 40.1
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 9.1e-74 281.6 192 73.4
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 2.7e-70 270.0 343 43.1
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.7e-67 260.8 229 55.9
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 1.8e-66 257.3 302 43.0
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 4.7e-62 242.7 221 53.8
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 7.5e-60 235.3 352 38.4
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 2.0e-57 227.3 242 49.6
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 4.1e-50 203.0 379 34.6
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 1.7e-43 181.0 127 67.7
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 4.3e-31 139.8 148 48.6
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.4e-26 124.0 113 54.9
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 1.1e-23 115.2 109 53.2
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.7e-22 109.8 64 73.4
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 8.3e-19 99.0 57 75.4
unitig_8.g3591 Utricularia gibba HOM05D004580 ORTHO05D005917 1.7e-11 74.7 82 48.8
Nitab4.5_0006124g0020 Nicotiana tabacum HOM05D000011 ORTHO05D036898 7.3e-07 59.3 53 54.7


User provided reference genes

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