Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 6.0e-115 417.5 212 100.0
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 4.7e-104 381.3 206 94.7
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 6.2e-104 380.9 206 95.1
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 3.3e-97 358.6 206 89.3
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 1.2e-67 260.4 208 69.2
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.5e-67 258.8 207 65.7
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.5e-67 258.8 207 65.7
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 2.3e-66 256.1 208 60.6
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 3.9e-66 255.4 205 62.9
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 1.3e-61 240.4 205 59.5
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 1.1e-60 237.3 203 57.1
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 1.9e-60 236.5 205 60.0
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 7.2e-60 234.6 211 59.7
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 7.2e-60 234.6 211 59.2
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 1.2e-59 233.8 206 57.3
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 7.9e-59 231.1 211 57.8
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 1.3e-58 230.3 199 60.3
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 2.3e-58 229.6 205 60.5
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 2.3e-58 229.6 206 59.2
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 3.0e-58 229.2 206 56.8
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 5.1e-58 228.4 211 55.9
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 1.1e-57 227.3 206 59.7
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 1.5e-57 226.9 205 57.1
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 1.5e-57 226.9 210 57.1
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 4.3e-57 225.3 209 56.5
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 4.3e-57 225.3 129 84.5
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 5.7e-57 224.9 208 57.7
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 9.7e-57 224.2 209 58.4
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 1.6e-56 223.4 204 57.4
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 1.6e-56 223.4 210 56.2
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 2.2e-56 223.0 202 57.4
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 2.2e-56 223.0 449 37.2
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 2.2e-56 223.0 215 55.8
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 2.8e-56 222.6 205 56.1
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 4.8e-56 221.9 206 56.3
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 6.3e-56 221.5 206 54.9
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 1.4e-55 220.3 197 59.4
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 3.1e-55 219.2 217 55.3
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 1.2e-54 217.2 213 55.4
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 3.4e-54 215.7 211 55.9
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 4.5e-54 215.3 218 54.6
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 1.0e-53 214.2 199 53.8
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 1.0e-53 214.2 206 53.4
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 2.2e-53 213.0 203 53.7
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 2.2e-53 213.0 208 56.2
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 2.9e-53 212.6 210 55.2
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 6.5e-53 211.5 208 56.2
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 8.5e-53 211.1 211 54.5
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 8.5e-53 211.1 197 54.8
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 1.4e-52 210.3 213 53.5
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 3.2e-52 209.1 210 53.8
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 4.2e-52 208.8 211 55.0
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 7.2e-52 208.0 210 51.9
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 7.2e-52 208.0 208 52.4
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 1.2e-51 207.2 216 52.8
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 1.6e-51 206.8 209 54.1
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 6.1e-51 204.9 211 53.1
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 1.0e-50 204.1 209 51.7
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 1.0e-50 204.1 212 53.8
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 8.8e-50 201.1 211 51.7
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 2.0e-49 199.9 198 53.0
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 9.7e-49 197.6 206 53.4
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 1.7e-48 196.8 205 51.2
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 2.2e-48 196.4 208 52.9
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 6.3e-48 194.9 194 52.1
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 8.2e-48 194.5 210 51.4
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 1.4e-47 193.7 211 52.1
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 1.8e-47 193.4 204 52.0
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 3.1e-47 192.6 204 51.0
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 2.0e-46 189.9 204 50.0
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 2.6e-46 189.5 210 51.4
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 1.3e-45 187.2 207 50.7
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 1.3e-45 187.2 211 50.7
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 2.2e-45 186.4 223 49.8
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 6.5e-45 184.9 212 50.0
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 4.2e-44 182.2 207 48.3
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 7.2e-44 181.4 205 48.8
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 7.9e-43 177.9 199 48.7
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 7.9e-43 177.9 189 52.9
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 1.1e-41 174.1 206 44.7
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 7.4e-41 171.4 212 47.2
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 9.7e-41 171.0 204 45.1
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 1.3e-40 170.6 170 52.4
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 1.7e-40 170.2 168 52.4
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 1.7e-40 170.2 204 45.1
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 1.7e-40 170.2 207 45.9
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 6.3e-40 168.3 204 45.1
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 5.3e-39 165.2 208 44.7
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 7.0e-39 164.9 204 44.6
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 7.0e-39 164.9 208 47.6
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 9.1e-39 164.5 200 44.5
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 1.6e-38 163.7 206 42.7
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 2.0e-38 163.3 204 45.6
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 2.0e-38 163.3 206 42.7
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 2.0e-38 163.3 205 42.4
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 7.7e-38 161.4 168 50.0
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 3.8e-37 159.1 208 42.3
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 3.8e-37 159.1 208 42.3
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 1.5e-36 157.1 202 40.6
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 2.7e-35 152.9 208 44.7
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 1.8e-34 150.2 201 42.3
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 1.8e-34 150.2 179 45.8
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 5.7e-33 145.2 207 43.0
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 2.4e-31 139.8 208 40.9
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 1.7e-29 133.7 148 51.4
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 1.9e-28 130.2 203 38.4
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 7.5e-25 118.2 117 49.6
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 1.6e-22 110.5 162 38.3
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 2.0e-22 110.2 126 39.7
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 5.9e-22 108.6 166 39.8
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 1.7e-21 107.1 173 35.3
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 3.8e-21 105.9 120 45.0
Nitab4.5_0000282g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 4.0e-18 95.9 77 71.4
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 3.4e-17 92.8 89 51.7
Hma1.2p1_1049F.1_g251890 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.8e-16 89.7 77 67.5


User provided reference genes

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