Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 5.1e-185 651.0 340 100.0
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 2.2e-167 592.4 381 83.7
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 2.3e-145 519.2 381 73.8
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 2.0e-141 506.1 375 73.3
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 8.6e-140 500.7 382 72.0
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 1.3e-132 476.9 406 66.7
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 4.7e-114 415.2 247 87.4
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 2.1e-90 336.7 385 53.2
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 3.0e-84 316.2 385 49.6
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 4.3e-83 312.4 211 81.5
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 7.4e-83 311.6 389 49.1
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 1.3e-82 310.8 385 47.5
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 1.3e-82 310.8 385 46.8
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 6.9e-81 305.1 391 49.4
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 4.5e-80 302.4 401 46.9
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 3.8e-79 299.3 390 47.7
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 2.5e-78 296.6 390 46.9
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 1.8e-76 290.4 408 48.5
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 3.0e-76 289.7 361 47.9
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 4.8e-74 282.3 405 45.4
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 1.3e-71 274.2 421 43.9
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 1.2e-69 267.7 414 44.7
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 2.7e-69 266.5 414 44.9
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 5.1e-68 262.3 416 42.8
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 8.8e-68 261.5 393 42.7
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 1.1e-67 261.2 393 44.0
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 1.4e-65 254.2 365 46.8
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 9.1e-65 251.5 379 43.3
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 9.1e-65 251.5 387 44.2
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 1.5e-64 250.8 396 44.2
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 2.6e-64 250.0 419 40.8
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 2.9e-63 246.5 389 42.4
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 3.8e-63 246.1 402 40.5
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 8.5e-63 245.0 388 42.3
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 1.4e-62 244.2 387 41.1
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 3.2e-62 243.0 383 43.3
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 5.5e-62 242.3 398 42.7
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 2.7e-61 240.0 395 41.0
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 2.7e-61 240.0 441 38.5
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 3.6e-61 239.6 388 39.9
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 3.6e-61 239.6 375 40.5
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 1.4e-60 237.7 395 41.3
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 2.3e-60 236.9 400 41.0
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 5.1e-60 235.7 390 42.1
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 6.7e-60 235.3 399 40.6
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 8.8e-60 235.0 394 41.1
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 4.4e-59 232.6 389 45.0
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 5.7e-59 232.3 346 43.6
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 7.4e-59 231.9 391 38.4
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 1.7e-58 230.7 348 43.4
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 4.8e-58 229.2 328 43.3
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 6.3e-58 228.8 339 45.7
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 8.2e-58 228.4 406 40.6
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 1.1e-57 228.0 333 41.1
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 4.1e-57 226.1 396 36.9
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 9.1e-57 224.9 410 39.8
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 1.2e-56 224.6 393 38.7
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 2.6e-56 223.4 394 38.1
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 5.9e-56 222.2 405 38.5
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 5.9e-56 222.2 405 38.3
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 5.9e-56 222.2 389 39.8
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 1.3e-55 221.1 392 38.8
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 2.9e-55 219.9 392 37.8
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 2.5e-54 216.9 411 35.3
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 4.2e-54 216.1 412 39.3
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 2.1e-53 213.8 265 46.4
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 8.0e-53 211.8 338 42.6
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 1.0e-52 211.5 396 38.1
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 1.4e-52 211.1 343 40.2
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.8e-52 210.7 429 36.1
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 5.2e-52 209.1 344 42.4
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 5.2e-52 209.1 436 39.0
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 6.7e-52 208.8 348 40.5
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 6.7e-52 208.8 345 40.0
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 1.1e-51 208.0 249 46.2
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 1.5e-51 207.6 395 37.7
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 2.6e-51 206.8 344 38.7
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 3.3e-51 206.5 339 40.7
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 9.7e-51 204.9 352 40.1
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 4.8e-50 202.6 383 36.3
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 6.3e-50 202.2 218 50.0
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 3.1e-49 199.9 351 39.9
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 1.2e-48 198.0 376 35.9
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 3.5e-48 196.4 381 34.4
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 5.9e-48 195.7 220 47.7
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 7.7e-48 195.3 401 35.2
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 8.5e-47 191.8 436 35.3
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 2.5e-46 190.3 435 34.0
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 4.2e-46 189.5 236 47.0
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 5.5e-46 189.1 248 42.3
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 7.2e-46 188.7 385 39.5
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 1.0e-44 184.9 378 35.2
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 1.4e-44 184.5 345 37.7
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 4.0e-44 183.0 323 39.9
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 8.8e-44 181.8 395 35.7
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 1.2e-43 181.4 393 36.4
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 1.5e-43 181.0 268 39.6
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 2.8e-42 176.8 245 42.4
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 4.8e-42 176.0 330 37.6
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 1.8e-41 174.1 315 42.2
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 5.9e-40 169.1 252 40.9
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 3.8e-39 166.4 281 38.1
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 4.2e-38 162.9 346 34.4
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 1.2e-37 161.4 355 34.1
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 1.2e-37 161.4 355 34.1
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 1.2e-37 161.4 355 34.1
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 8.0e-37 158.7 184 48.4
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 3.0e-36 156.8 213 41.3
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 5.7e-35 152.5 397 33.5
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 1.3e-34 151.4 351 33.3
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 2.2e-34 150.6 142 54.2
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 2.8e-34 150.2 184 45.7
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 1.8e-33 147.5 280 36.1
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 5.9e-32 142.5 182 44.0
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 1.7e-31 141.0 259 37.1
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 1.7e-31 141.0 192 42.2
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 3.8e-31 139.8 342 31.6
COL.COLO4_09627 Corchorus olitorius HOM05D004411 ORTHO05D005569 1.1e-30 138.3 266 37.2
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 4.7e-29 132.9 334 31.1
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 6.1e-29 132.5 385 32.2
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 1.4e-28 131.3 411 27.0
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 1.8e-28 131.0 132 54.5
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 1.5e-27 127.9 238 35.3
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 7.5e-27 125.6 100 68.0
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 2.9e-26 123.6 101 64.4
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 4.9e-26 122.9 353 32.3
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 7.0e-25 119.0 278 32.7
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 1.6e-24 117.9 114 53.5
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 2.3e-23 114.0 81 65.4
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 3.9e-23 113.2 120 55.8
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 1.6e-21 107.8 85 62.4
Ah.06g195930 Amaranthus hybridus HOM05D004411 ORTHO05D005569 3.6e-21 106.7 264 32.2
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 1.0e-20 105.1 110 51.8
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 1.0e-20 105.1 110 51.8
Glyma.09G101400 Glycine max HOM05D004411 ORTHO05D005569 4.0e-20 103.2 203 36.9
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 6.8e-20 102.4 232 35.8
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 1.5e-19 101.3 86 61.6
VMungo0540G0671 Vigna mungo HOM05D004411 ORTHO05D005569 2.0e-19 100.9 208 36.1
PGSC0003DMG400013925 Solanum tuberosum HOM05D004411 ORTHO05D005569 7.5e-19 99.0 49 100.0
VMungo1383G3213 Vigna mungo HOM05D004411 ORTHO05D005569 1.7e-18 97.8 115 44.3
EL10Ac9g22233 Beta vulgaris HOM05D004411 ORTHO05D005569 3.7e-18 96.7 242 33.1
PSO339G6638 Papaver somniferum HOM05D004411 ORTHO05D005569 8.3e-18 95.5 153 34.0
Haze_07158 Corylus avellana HOM05D004411 ORTHO05D005569 3.4e-11 73.6 70 52.9
GSVIVG01036883001 Vitis vinifera HOM05D004411 ORTHO05D005569 3.7e-10 70.1 55 58.2
arahy.Tifrunner.gnm1.ann1.H97TV8 Arachis hypogaea HOM05D004411 ORTHO05D005569 4.1e-09 66.6 83 44.6
arahy.Tifrunner.gnm1.ann1.ZM7UYF Arachis hypogaea HOM05D004411 ORTHO05D005569 4.6e-08 63.2 98 38.8
Lalb_Chr15g0080381 Lupinus albus HOM05D004411 ORTHO05D005569 7.8e-08 62.4 110 32.7


User provided reference genes

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