Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402013914 Solanum tuberosum HOM05D006648 ORTHO05D008253 3.1e-45 184.9 101 100.0
Sopen12g013090 Solanum pennellii HOM05D006648 ORTHO05D008253 4.3e-23 111.3 71 78.9
Solyc12g027800.1 Solanum lycopersicum HOM05D006648 ORTHO05D008253 1.7e-22 109.4 57 91.2
Nitab4.5_0021422g0010 Nicotiana tabacum HOM05D006648 ORTHO05D008253 1.2e-20 103.2 71 74.6
Nitab4.5_0000011g0060 Nicotiana tabacum HOM05D006648 ORTHO05D008253 4.5e-20 101.3 71 73.2
CAN.G94.9 Capsicum annuum HOM05D006648 ORTHO05D008253 1.4e-18 96.3 68 73.5
Gohir.A07G062400 Gossypium hirsutum HOM05D006648 ORTHO05D008253 1.5e-15 86.3 55 74.5
Thecc.03G074500 Theobroma cacao HOM05D006648 ORTHO05D008253 2.6e-15 85.5 70 61.4
Atru.chr9.364 Acer truncatum HOM05D006648 ORTHO05D008253 4.4e-15 84.7 55 70.9
TWI15G0343 Tripterygium wilfordii HOM05D006648 ORTHO05D008253 4.4e-15 84.7 71 57.7
CiPaw.15G092300 Carya illinoinensis HOM05D006648 ORTHO05D008253 5.7e-15 84.3 56 69.6
MD14G1244500 Malus domestica HOM05D006648 ORTHO05D008253 5.7e-15 84.3 71 60.6
Prupe.5G242000 Prunus persica HOM05D006648 ORTHO05D008253 5.7e-15 84.3 55 72.7
Peaxi162Scf00358g00410 Petunia axillaris HOM05D006648 ORTHO05D008253 7.4e-15 84.0 54 74.1
RcHm_v2.0_Chr7g0177381 Rosa chinensis HOM05D006648 ORTHO05D008253 9.7e-15 83.6 57 73.7
Gorai.001G070600 Gossypium raimondii HOM05D006648 ORTHO05D008253 1.3e-14 83.2 55 70.9
FAN04G2085 Fragaria x ananassa HOM05D006648 ORTHO05D008253 1.7e-14 82.8 57 71.9
TAR629G3357 Trochodendron aralioides HOM05D006648 ORTHO05D008253 1.7e-14 82.8 55 69.1
Cc04_g08730 Coffea canephora HOM05D006648 ORTHO05D008253 2.8e-14 82.0 55 67.3
Ciclev10020172m.g Citrus clementina HOM05D006648 ORTHO05D008253 3.7e-14 81.6 55 69.1
FAN08G0531 Fragaria x ananassa HOM05D006648 ORTHO05D008253 4.8e-14 81.3 71 62.0
MBI03_g05121_MAGBIO Magnolia biondii HOM05D006648 ORTHO05D008253 4.8e-14 81.3 59 67.8
vmacro16390 Vaccinium macrocarpon HOM05D006648 ORTHO05D008253 4.8e-14 81.3 55 67.3
VMungo0251G3035 Vigna mungo HOM05D006648 ORTHO05D008253 6.3e-14 80.9 60 63.3
GSVIVG01029375001 Vitis vinifera HOM05D006648 ORTHO05D008253 6.3e-14 80.9 55 69.1
Lj5A166T76 Lonicera japonica HOM05D006648 ORTHO05D008253 1.1e-13 80.1 55 65.5
ECA232G2150 Erigeron canadensis HOM05D006648 ORTHO05D008253 1.4e-13 79.7 55 65.5
FAN13G0169 Fragaria x ananassa HOM05D006648 ORTHO05D008253 2.4e-13 79.0 55 74.5
Actinidia35145 Actinidia chinensis HOM05D006648 ORTHO05D008253 3.1e-13 78.6 55 65.5
Cfa012641 Carpinus fangiana HOM05D006648 ORTHO05D008253 3.1e-13 78.6 55 69.1
FvH4_5g18210 Fragaria vesca HOM05D006648 ORTHO05D008253 3.1e-13 78.6 55 70.9
FAN18G2423 Fragaria x ananassa HOM05D006648 ORTHO05D008253 3.1e-13 78.6 55 70.9
Glyma.05G248900 Glycine max HOM05D006648 ORTHO05D008253 3.1e-13 78.6 54 66.7
CANSAT01G2528 Cannabis sativa HOM05D006648 ORTHO05D008253 4.1e-13 78.2 70 58.6
Rhsim12G0136600 Rhododendron simsii HOM05D006648 ORTHO05D008253 3.5e-12 75.1 54 63.0
arahy.Tifrunner.gnm1.ann1.NPI4TW Arachis hypogaea HOM05D006648 ORTHO05D008253 4.5e-12 74.7 55 63.6
arahy.Tifrunner.gnm1.ann1.WU90Y9 Arachis hypogaea HOM05D006648 ORTHO05D008253 4.5e-12 74.7 55 63.6
Aqoxy3G00019 Aquilegia oxysepala HOM05D006648 ORTHO05D008253 5.9e-12 74.3 55 67.3
Ca_17156_v3 Cicer arietinum L. HOM05D006648 ORTHO05D008253 7.7e-12 73.9 54 66.7
Manes.02G213372 Manihot esculenta HOM05D006648 ORTHO05D008253 1.0e-11 73.6 55 60.0
Phvul.002G333400 Phaseolus vulgaris HOM05D006648 ORTHO05D008253 1.0e-11 73.6 54 64.8
Duzib205G0071 Durio zibethinus HOM05D006648 ORTHO05D008253 1.3e-11 73.2 55 67.3
LjContig00484g0018967 Lotus japonicus HOM05D006648 ORTHO05D008253 1.3e-11 73.2 54 64.8
AT1G17850 Arabidopsis thaliana HOM05D006648 ORTHO05D008253 1.7e-11 72.8 54 61.1
SGA_v2.0_scaffold164G38119 Striga asiatica HOM05D006648 ORTHO05D008253 2.2e-11 72.4 79 53.2
Aa31LG7G2660 Aethionema arabicum HOM05D006648 ORTHO05D008253 2.9e-11 72.0 54 63.0
ATR0618G275 Amborella trichopoda HOM05D006648 ORTHO05D008253 3.8e-11 71.6 59 59.3
Medtr3g006290 Medicago truncatula HOM05D006648 ORTHO05D008253 3.8e-11 71.6 54 64.8
Nn4g24907 Nelumbo nucifera HOM05D006648 ORTHO05D008253 6.5e-11 70.9 55 61.8
Potri.015G029600 Populus trichocarpa HOM05D006648 ORTHO05D008253 1.1e-10 70.1 55 61.8
Sabra15G0024800 Salix brachista HOM05D006648 ORTHO05D008253 1.1e-10 70.1 55 61.8
THA.LOC104810632 Tarenaya hassleriana HOM05D006648 ORTHO05D008253 1.1e-10 70.1 55 65.5
Eucgr.H00617 Eucalyptus grandis HOM05D006648 ORTHO05D008253 1.9e-10 69.3 55 54.5
Lalb_Chr05g0221351 Lupinus albus HOM05D006648 ORTHO05D008253 1.9e-10 69.3 54 61.1
Carub.0001s1758 Capsella rubella HOM05D006648 ORTHO05D008253 2.5e-10 68.9 54 59.3
SalBow1G6461 Salvia bowleyana HOM05D006648 ORTHO05D008253 2.5e-10 68.9 78 51.3
CARHR018460 Cardamine hirsuta HOM05D006648 ORTHO05D008253 3.2e-10 68.6 54 59.3
Migut.D02056 Erythranthe guttata HOM05D006648 ORTHO05D008253 5.5e-10 67.8 69 56.5
Thhalv10007680m.g Eutrema salsugineum HOM05D006648 ORTHO05D008253 7.2e-10 67.4 54 59.3
Sp1g15930 Schrenkiella parvula HOM05D006648 ORTHO05D008253 7.2e-10 67.4 54 57.4
ClCG10G015270 Citrullus lanatus HOM05D006648 ORTHO05D008253 9.4e-10 67.0 55 58.2
Haze_08018 Corylus avellana HOM05D006648 ORTHO05D008253 9.4e-10 67.0 51 62.7
TPR.G30054 Trifolium pratense HOM05D006648 ORTHO05D008253 9.4e-10 67.0 50 66.0
C05p16230 Brassica napus HOM05D006648 ORTHO05D008253 2.1e-09 65.9 56 55.4
BolC5t30325H Brassica oleracea HOM05D006648 ORTHO05D008253 2.1e-09 65.9 56 55.4
DCAR_014746 Daucus carota HOM05D006648 ORTHO05D008253 2.1e-09 65.9 55 61.8
Sc12g0007810 Simmondsia chinensis HOM05D006648 ORTHO05D008253 4.7e-09 64.7 54 55.6
Psat7g000320 Pisum sativum HOM05D006648 ORTHO05D008253 6.1e-09 64.3 54 61.1
EL10Ac8g19442 Beta vulgaris HOM05D006648 ORTHO05D008253 8.0e-09 63.9 52 55.8
MELO3C009853.2 Cucumis melo HOM05D006648 ORTHO05D008253 1.0e-08 63.5 55 56.4
Sed0021957 Sechium edule HOM05D006648 ORTHO05D008253 1.0e-08 63.5 55 58.2
AL1G30210 Arabidopsis lyrata HOM05D006648 ORTHO05D008253 1.8e-08 62.8 55 56.4
Lsat_1_v5_gn_0_10520 Lactuca sativa HOM05D006648 ORTHO05D008253 1.8e-08 62.8 55 60.0
Zm00001eb065310 Zea mays HOM05D006648 ORTHO05D008253 1.8e-08 62.8 54 57.4
BcaB07g34009 Brassica carinata HOM05D006648 ORTHO05D008253 2.3e-08 62.4 55 56.4
A06p13910 Brassica napus HOM05D006648 ORTHO05D008253 2.3e-08 62.4 57 54.4
BraA06t24532Z Brassica rapa HOM05D006648 ORTHO05D008253 2.3e-08 62.4 57 54.4
CsaV3_3G041250 Cucumis sativus L. HOM05D006648 ORTHO05D008253 3.0e-08 62.0 55 56.4
HanXRQChr16g0503321 Helianthus annuus HOM05D006648 ORTHO05D008253 6.7e-08 60.8 55 54.5
PSO384G4308 Papaver somniferum HOM05D006648 ORTHO05D008253 1.5e-07 59.7 54 55.6
PSO339G3414 Papaver somniferum HOM05D006648 ORTHO05D008253 2.0e-07 59.3 54 55.6
unitig_0.g24 Utricularia gibba HOM05D006648 ORTHO05D008253 3.3e-07 58.5 55 58.2
Mapoly0049s0044 Marchantia polymorpha HOM05D006648 ORTHO05D008253 5.7e-07 57.8 68 47.1
HPP92_005076 Vanilla planifolia HOM05D006648 ORTHO05D008253 7.5e-07 57.4 74 40.5
AUR62033067 Chenopodium quinoa HOM05D006648 ORTHO05D008253 9.7e-07 57.0 48 58.3
AUR62042217 Chenopodium quinoa HOM05D006648 ORTHO05D008253 9.7e-07 57.0 48 58.3
CDE04G0242 Ceratophyllum demersum HOM05D006648 ORTHO05D008253 2.2e-06 55.8 58 46.6


User provided reference genes

Program Settings