Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402013065 Solanum tuberosum HOM05D002272 ORTHO05D005405 1.1e-40 169.5 81 100.0
Solyc03g117320.4 Solanum lycopersicum HOM05D002272 ORTHO05D005405 2.0e-23 112.1 59 89.8
Sopen03g036210 Solanum pennellii HOM05D002272 ORTHO05D005405 2.0e-23 112.1 59 89.8
Peaxi162Scf00126g01027 Petunia axillaris HOM05D002272 ORTHO05D005405 4.6e-23 110.9 66 81.8
PGSC0003DMG400014202 Solanum tuberosum HOM05D002272 ORTHO05D005405 5.9e-23 110.5 59 88.1
CAN.G407.30 Capsicum annuum HOM05D002272 ORTHO05D005405 1.3e-22 109.4 59 88.1
Nitab4.5_0001437g0040 Nicotiana tabacum HOM05D002272 ORTHO05D005405 1.7e-22 109.0 66 81.8
Nitab4.5_0005622g0030 Nicotiana tabacum HOM05D002272 ORTHO05D005405 1.7e-22 109.0 66 81.8
Nitab4.5_0002322g0100 Nicotiana tabacum HOM05D002272 ORTHO05D005405 2.3e-22 108.6 65 80.0
Sopen01g021790 Solanum pennellii HOM05D002272 ORTHO05D005405 3.0e-22 108.2 62 85.5
Cc03_g00130 Coffea canephora HOM05D002272 ORTHO05D005405 1.1e-21 106.3 59 83.1
Lj6A701G45 Lonicera japonica HOM05D002272 ORTHO05D005405 1.9e-21 105.5 59 79.7
Rhsim04G0248300 Rhododendron simsii HOM05D002272 ORTHO05D005405 1.9e-21 105.5 59 84.7
HPP92_026061 Vanilla planifolia HOM05D002272 ORTHO05D005405 4.3e-21 104.4 59 79.7
Dinv29507 Davidia involucrata HOM05D002272 ORTHO05D005405 5.6e-21 104.0 59 79.7
Thecc.04G313100 Theobroma cacao HOM05D002272 ORTHO05D005405 7.3e-21 103.6 59 79.7
Eucgr.H04124 Eucalyptus grandis HOM05D002272 ORTHO05D005405 9.5e-21 103.2 59 79.7
MBI13_g24903_MAGBIO Magnolia biondii HOM05D002272 ORTHO05D005405 9.5e-21 103.2 59 79.7
Oeu012217.1 Olea europaea HOM05D002272 ORTHO05D005405 9.5e-21 103.2 59 81.4
CSS0028739 Camellia sinensis var. sinensis HOM05D002272 ORTHO05D005405 2.1e-20 102.1 59 78.0
CSS0045814 Camellia sinensis var. sinensis HOM05D002272 ORTHO05D005405 2.1e-20 102.1 59 78.0
CANSAT78G0846 Cannabis sativa HOM05D002272 ORTHO05D005405 3.6e-20 101.3 59 78.0
Hma1.2p1_0013F.1_g007910 Hydrangea macrophylla HOM05D002272 ORTHO05D005405 3.6e-20 101.3 59 76.3
Lsat_1_v5_gn_6_118081 Lactuca sativa HOM05D002272 ORTHO05D005405 3.6e-20 101.3 59 78.0
QL06p014217 Quercus lobata HOM05D002272 ORTHO05D005405 3.6e-20 101.3 58 75.9
FAN07G0753 Fragaria x ananassa HOM05D002272 ORTHO05D005405 4.7e-20 100.9 59 78.0
FAN17G2520 Fragaria x ananassa HOM05D002272 ORTHO05D005405 4.7e-20 100.9 59 78.0
RcHm_v2.0_Chr4g0427531 Rosa chinensis HOM05D002272 ORTHO05D005405 4.7e-20 100.9 59 78.0
Cfa015730 Carpinus fangiana HOM05D002272 ORTHO05D005405 6.2e-20 100.5 59 79.7
Nn4g26701 Nelumbo nucifera HOM05D002272 ORTHO05D005405 6.2e-20 100.5 59 76.3
Sc18g0007250 Simmondsia chinensis HOM05D002272 ORTHO05D005405 6.2e-20 100.5 59 76.3
CiPaw.01G129200 Carya illinoinensis HOM05D002272 ORTHO05D005405 8.0e-20 100.1 59 74.6
Dinv18018 Davidia involucrata HOM05D002272 ORTHO05D005405 8.0e-20 100.1 59 78.0
Ciclev10007196m.g Citrus clementina HOM05D002272 ORTHO05D005405 1.1e-19 99.8 58 75.9
HanXRQChr05g0149261 Helianthus annuus HOM05D002272 ORTHO05D005405 1.1e-19 99.8 59 78.0
FvH4_4g21510 Fragaria vesca HOM05D002272 ORTHO05D005405 1.4e-19 99.4 59 76.3
FAN12G3762 Fragaria x ananassa HOM05D002272 ORTHO05D005405 1.4e-19 99.4 59 76.3
MD16G1136200 Malus domestica HOM05D002272 ORTHO05D005405 1.4e-19 99.4 59 74.6
CiPaw.02G069200 Carya illinoinensis HOM05D002272 ORTHO05D005405 1.8e-19 99.0 59 74.6
MD13G1139500 Malus domestica HOM05D002272 ORTHO05D005405 1.8e-19 99.0 59 74.6
PGR004G1245 Punica granatum HOM05D002272 ORTHO05D005405 1.8e-19 99.0 59 74.6
MSTRG.10168 Avicennia marina HOM05D002272 ORTHO05D005405 2.3e-19 98.6 59 78.0
TWI75G1791 Tripterygium wilfordii HOM05D002272 ORTHO05D005405 2.3e-19 98.6 59 76.3
Actinidia18507 Actinidia chinensis HOM05D002272 ORTHO05D005405 3.1e-19 98.2 59 78.0
ECA246G1461 Erigeron canadensis HOM05D002272 ORTHO05D005405 3.1e-19 98.2 59 76.3
Migut.G00004 Erythranthe guttata HOM05D002272 ORTHO05D005405 3.1e-19 98.2 59 76.3
Migut.O00400 Erythranthe guttata HOM05D002272 ORTHO05D005405 3.1e-19 98.2 59 76.3
BcaC05g28788 Brassica carinata HOM05D002272 ORTHO05D005405 4.0e-19 97.8 59 74.6
C05p48970 Brassica napus HOM05D002272 ORTHO05D005405 4.0e-19 97.8 59 74.6
BolC5t33637H Brassica oleracea HOM05D002272 ORTHO05D005405 4.0e-19 97.8 59 74.6
CDE01G0715 Ceratophyllum demersum HOM05D002272 ORTHO05D005405 4.0e-19 97.8 59 72.9
Gohir.D02G064300 Gossypium hirsutum HOM05D002272 ORTHO05D005405 4.0e-19 97.8 59 74.6
SalBow8G2239 Salvia bowleyana HOM05D002272 ORTHO05D005405 4.0e-19 97.8 59 76.3
TAR636G1706 Trochodendron aralioides HOM05D002272 ORTHO05D005405 4.0e-19 97.8 59 72.9
CDE12G0965 Ceratophyllum demersum HOM05D002272 ORTHO05D005405 5.2e-19 97.4 59 72.9
COL.COLO4_34516 Corchorus olitorius HOM05D002272 ORTHO05D005405 5.2e-19 97.4 59 76.3
Hund14390 Selenicereus undatus HOM05D002272 ORTHO05D005405 5.2e-19 97.4 59 76.3
vmacro08012 Vaccinium macrocarpon HOM05D002272 ORTHO05D005405 6.8e-19 97.1 59 76.3
GSVIVG01017688001 Vitis vinifera HOM05D002272 ORTHO05D005405 6.8e-19 97.1 59 76.3
A05p32330 Brassica napus HOM05D002272 ORTHO05D005405 1.2e-18 96.3 59 72.9
BraA05t22061Z Brassica rapa HOM05D002272 ORTHO05D005405 1.2e-18 96.3 59 72.9
Haze_00766 Corylus avellana HOM05D002272 ORTHO05D005405 1.2e-18 96.3 55 80.0
Hund04488 Selenicereus undatus HOM05D002272 ORTHO05D005405 1.2e-18 96.3 59 74.6
AUR62007379 Chenopodium quinoa HOM05D002272 ORTHO05D005405 1.5e-18 95.9 59 71.2
AUR62018609 Chenopodium quinoa HOM05D002272 ORTHO05D005405 1.5e-18 95.9 59 71.2
Thhalv10021142m.g Eutrema salsugineum HOM05D002272 ORTHO05D005405 1.5e-18 95.9 59 74.6
Medtr6g006970 Medicago truncatula HOM05D002272 ORTHO05D005405 1.5e-18 95.9 59 72.9
Prupe.1G105200 Prunus persica HOM05D002272 ORTHO05D005405 1.5e-18 95.9 59 74.6
SGA_v2.0_scaffold157G37389 Striga asiatica HOM05D002272 ORTHO05D005405 1.5e-18 95.9 59 76.3
TAR365G0404 Trochodendron aralioides HOM05D002272 ORTHO05D005405 1.5e-18 95.9 59 71.2
unitig_8.g3105 Utricularia gibba HOM05D002272 ORTHO05D005405 1.5e-18 95.9 59 76.3
C03p48850 Brassica napus HOM05D002272 ORTHO05D005405 2.0e-18 95.5 59 74.6
arahy.Tifrunner.gnm1.ann1.E0PE5U Arachis hypogaea HOM05D002272 ORTHO05D005405 2.6e-18 95.1 59 72.9
BcaB04g20838 Brassica carinata HOM05D002272 ORTHO05D005405 2.6e-18 95.1 59 72.9
DCAR_002551 Daucus carota HOM05D002272 ORTHO05D005405 2.6e-18 95.1 59 76.3
Lalb_Chr04g0247221 Lupinus albus HOM05D002272 ORTHO05D005405 2.6e-18 95.1 59 72.9
Manes.02G178300 Manihot esculenta HOM05D002272 ORTHO05D005405 2.6e-18 95.1 59 74.6
Potri.008G207000 Populus trichocarpa HOM05D002272 ORTHO05D005405 2.6e-18 95.1 59 78.0
Sp3g15640 Schrenkiella parvula HOM05D002272 ORTHO05D005405 2.6e-18 95.1 59 72.9
BcaB04g18943 Brassica carinata HOM05D002272 ORTHO05D005405 3.4e-18 94.7 59 72.9
BcaC09g48707 Brassica carinata HOM05D002272 ORTHO05D005405 3.4e-18 94.7 59 72.9
BcaNung06481 Brassica carinata HOM05D002272 ORTHO05D005405 3.4e-18 94.7 59 72.9
C01p46710 Brassica napus HOM05D002272 ORTHO05D005405 3.4e-18 94.7 59 72.9
BolC1t04639H Brassica oleracea HOM05D002272 ORTHO05D005405 3.4e-18 94.7 59 72.9
Carub.0003s1719 Capsella rubella HOM05D002272 ORTHO05D005405 3.4e-18 94.7 59 72.9
Cpa.g.sc146.23 Carica papaya HOM05D002272 ORTHO05D005405 3.4e-18 94.7 59 71.2
Glyma.13G276300 Glycine max HOM05D002272 ORTHO05D005405 3.4e-18 94.7 59 71.2
VMungo1080G0714 Vigna mungo HOM05D002272 ORTHO05D005405 3.4e-18 94.7 59 72.9
Gorai.005G072600 Gossypium raimondii HOM05D002272 ORTHO05D005405 4.4e-18 94.4 59 71.2
TPR.G18850 Trifolium pratense HOM05D002272 ORTHO05D005405 4.4e-18 94.4 59 71.2
EL10Ac5g11978 Beta vulgaris HOM05D002272 ORTHO05D005405 5.8e-18 94.0 59 71.2
BcaB06g25841 Brassica carinata HOM05D002272 ORTHO05D005405 5.8e-18 94.0 59 72.9
BcaC01g03762 Brassica carinata HOM05D002272 ORTHO05D005405 7.5e-18 93.6 58 74.1
Ca_06467_v3 Cicer arietinum L. HOM05D002272 ORTHO05D005405 7.5e-18 93.6 59 71.2
Glyma.12G225000 Glycine max HOM05D002272 ORTHO05D005405 7.5e-18 93.6 59 71.2
PSO210G1506 Papaver somniferum HOM05D002272 ORTHO05D005405 7.5e-18 93.6 59 69.5
arahy.Tifrunner.gnm1.ann1.Z0DKXY Arachis hypogaea HOM05D002272 ORTHO05D005405 9.8e-18 93.2 59 71.2
CARHR092790 Cardamine hirsuta HOM05D002272 ORTHO05D005405 9.8e-18 93.2 59 69.5
Lj3g0022905 Lotus japonicus HOM05D002272 ORTHO05D005405 1.3e-17 92.8 59 69.5
PSO761G0243 Papaver somniferum HOM05D002272 ORTHO05D005405 1.3e-17 92.8 59 69.5
Phvul.005G012100 Phaseolus vulgaris HOM05D002272 ORTHO05D005405 1.3e-17 92.8 59 71.2
Psat1g056160 Pisum sativum HOM05D002272 ORTHO05D005405 1.3e-17 92.8 59 69.5
Aqoxy5G02803 Aquilegia oxysepala HOM05D002272 ORTHO05D005405 1.7e-17 92.4 59 72.9
AL3G30550 Arabidopsis lyrata HOM05D002272 ORTHO05D005405 1.7e-17 92.4 59 72.9
AT3G17465 Arabidopsis thaliana HOM05D002272 ORTHO05D005405 1.7e-17 92.4 59 72.9
C03p48820 Brassica napus HOM05D002272 ORTHO05D005405 1.7e-17 92.4 59 72.9
BolC3t17164H Brassica oleracea HOM05D002272 ORTHO05D005405 1.7e-17 92.4 59 72.9
TPR.G2257 Trifolium pratense HOM05D002272 ORTHO05D005405 1.7e-17 92.4 59 69.5
Potri.010G002300 Populus trichocarpa HOM05D002272 ORTHO05D005405 2.2e-17 92.0 59 74.6
Medtr2g090370 Medicago truncatula HOM05D002272 ORTHO05D005405 2.9e-17 91.7 55 72.7
Sabra10G0001800 Salix brachista HOM05D002272 ORTHO05D005405 2.9e-17 91.7 59 74.6
A01p36790 Brassica napus HOM05D002272 ORTHO05D005405 3.7e-17 91.3 60 71.7
BraA01t03740Z Brassica rapa HOM05D002272 ORTHO05D005405 3.7e-17 91.3 60 71.7
PSO541G1920 Papaver somniferum HOM05D002272 ORTHO05D005405 3.7e-17 91.3 59 69.5
Sed0028101 Sechium edule HOM05D002272 ORTHO05D005405 4.9e-17 90.9 59 69.5
Ah.07g201130 Amaranthus hybridus HOM05D002272 ORTHO05D005405 1.1e-16 89.7 59 69.5
ATR0796G018 Amborella trichopoda HOM05D002272 ORTHO05D005405 1.1e-16 89.7 59 71.2
BolC1t04644H Brassica oleracea HOM05D002272 ORTHO05D040789 1.1e-16 89.7 54 72.2
Duzib212G0306 Durio zibethinus HOM05D002272 ORTHO05D005405 1.1e-16 89.7 59 71.2
Medtr1g093060 Medicago truncatula HOM05D002272 ORTHO05D005405 1.1e-16 89.7 59 67.8
THA.LOC104815360 Tarenaya hassleriana HOM05D002272 ORTHO05D005405 1.1e-16 89.7 59 67.8
Rhsim10G0078600 Rhododendron simsii HOM05D002272 ORTHO05D005405 1.4e-16 89.4 50 82.0
Sed0025255 Sechium edule HOM05D002272 ORTHO05D005405 2.4e-16 88.6 59 67.8
ClCG05G006870 Citrullus lanatus HOM05D002272 ORTHO05D005405 5.4e-16 87.4 59 67.8
Atru.chr4.3151 Acer truncatum HOM05D002272 ORTHO05D005405 1.6e-15 85.9 59 67.8
Mapoly0162s0018 Marchantia polymorpha HOM05D002272 ORTHO05D005405 1.6e-15 85.9 59 62.7
Aa31LG8G4410 Aethionema arabicum HOM05D002272 ORTHO05D005405 4.6e-15 84.3 49 77.6
Os01g0251100 Oryza sativa ssp. japonica HOM05D002272 ORTHO05D005405 6.0e-15 84.0 59 67.8
C01p46730 Brassica napus HOM05D002272 ORTHO05D040789 7.8e-15 83.6 53 69.8
CsaV3_3G015540 Cucumis sativus L. HOM05D002272 ORTHO05D005405 1.7e-14 82.4 59 67.8
Oeu037631.1 Olea europaea HOM05D002272 ORTHO05D005405 2.3e-14 82.0 53 71.7
SHI00050 Sapria himalayana HOM05D002272 ORTHO05D005405 1.9e-13 79.0 53 69.8
SEGI_24146 Sequoiadendron giganteum HOM05D002272 ORTHO05D005405 1.9e-13 79.0 55 61.8
MELO3C006752.2 Cucumis melo HOM05D002272 ORTHO05D005405 4.3e-13 77.8 59 62.7
SMO119G0282 Selaginella moellendorffii HOM05D002272 ORTHO05D005405 4.0e-11 71.2 54 59.3
Pp3c23_18210 Physcomitrium patens HOM05D002272 ORTHO05D005405 2.0e-10 68.9 55 54.5
Actinidia01065 Actinidia chinensis HOM05D002272 ORTHO05D005405 2.6e-10 68.6 36 83.3


User provided reference genes

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