Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402011001 Solanum tuberosum HOM05D005913 ORTHO05D007138 4.7e-149 531.2 268 100.0
Sopen10g034140 Solanum pennellii HOM05D005913 ORTHO05D007138 2.0e-144 515.8 268 96.3
Solyc10g084700.2 Solanum lycopersicum HOM05D005913 ORTHO05D007138 2.9e-143 511.9 268 95.5
PGSC0003DMG400016288 Solanum tuberosum HOM05D005913 ORTHO05D007138 2.9e-143 511.9 268 95.9
CAN.G324.3 Capsicum annuum HOM05D005913 ORTHO05D007138 4.5e-128 461.5 272 87.1
Peaxi162Scf00228g00514 Petunia axillaris HOM05D000044 ORTHO05D007138 1.1e-121 440.3 262 84.0
Nitab4.5_0000037g0040 Nicotiana tabacum HOM05D005913 ORTHO05D007138 5.2e-116 421.4 240 87.1
Peaxi162Scf00384g00045 Petunia axillaris HOM05D005913 ORTHO05D007138 2.5e-102 375.9 261 74.7
Oeu008301.1 Olea europaea HOM05D005913 ORTHO05D007138 8.4e-98 360.9 264 69.3
CSS0006724 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 6.6e-95 351.3 274 67.2
CSS0022052 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 2.4e-89 332.8 234 71.8
MSTRG.24154 Avicennia marina HOM05D005913 ORTHO05D007138 3.2e-89 332.4 266 65.8
Dinv28648 Davidia involucrata HOM05D005913 ORTHO05D007138 3.2e-89 332.4 270 64.8
Hma1.2p1_1287F.1_g273300 Hydrangea macrophylla HOM05D005913 ORTHO05D007138 4.2e-89 332.0 275 64.7
Dinv25093 Davidia involucrata HOM05D005913 ORTHO05D007138 1.3e-87 327.0 267 67.4
Lsat_1_v5_gn_9_20000 Lactuca sativa HOM05D005913 ORTHO05D007138 1.3e-85 320.5 265 63.0
SGA_v2.0_scaffold25G11107 Striga asiatica HOM05D005913 ORTHO05D007138 1.3e-85 320.5 266 64.3
Rhsim01G0236700 Rhododendron simsii HOM05D005913 ORTHO05D007138 2.8e-85 319.3 269 63.2
ECA247G1367 Erigeron canadensis HOM05D005913 ORTHO05D007138 3.6e-85 318.9 264 62.1
TAR633G1775 Trochodendron aralioides HOM05D005913 ORTHO05D007138 2.4e-84 316.2 259 65.3
GSVIVG01024730001 Vitis vinifera HOM05D005913 ORTHO05D007138 2.2e-82 309.7 270 61.9
Migut.N03298 Erythranthe guttata HOM05D005913 ORTHO05D007138 1.4e-81 307.0 266 63.5
CiPaw.13G076700 Carya illinoinensis HOM05D005913 ORTHO05D007138 1.6e-80 303.5 234 67.5
HanXRQChr16g0518331 Helianthus annuus HOM05D005913 ORTHO05D007138 1.6e-80 303.5 259 62.5
vmacro14595 Vaccinium macrocarpon HOM05D005913 ORTHO05D007138 2.7e-80 302.8 238 66.0
Nn2g15825 Nelumbo nucifera HOM05D005913 ORTHO05D007138 1.3e-79 300.4 273 59.7
Sc21g0006400 Simmondsia chinensis HOM05D005913 ORTHO05D007138 2.3e-79 299.7 239 65.3
MD11G1073200 Malus domestica HOM05D005913 ORTHO05D007138 3.9e-79 298.9 272 62.1
QL05p072708 Quercus lobata HOM05D005913 ORTHO05D007138 6.7e-79 298.1 258 63.6
Sc21g0006380 Simmondsia chinensis HOM05D005913 ORTHO05D007138 5.6e-78 295.0 239 64.9
TWI31G0765 Tripterygium wilfordii HOM05D005913 ORTHO05D007138 7.4e-78 294.7 232 66.8
Cfa011705 Carpinus fangiana HOM05D005913 ORTHO05D007138 3.7e-77 292.4 276 59.8
Prupe.6G056500 Prunus persica HOM05D005913 ORTHO05D007138 4.0e-76 288.9 274 61.3
FAN11G0587 Fragaria x ananassa HOM05D005913 ORTHO05D007138 5.3e-76 288.5 268 59.0
Sed0020527 Sechium edule HOM05D005913 ORTHO05D007138 6.9e-76 288.1 273 58.6
FvH4_3g38720 Fragaria vesca HOM05D005913 ORTHO05D007138 9.0e-76 287.7 268 58.6
Duzib150G0854 Durio zibethinus HOM05D005913 ORTHO05D007138 2.0e-75 286.6 270 59.3
Thecc.09G300200 Theobroma cacao HOM05D005913 ORTHO05D007138 5.8e-75 285.0 269 58.4
Lj3A585T46 Lonicera japonica HOM05D005913 ORTHO05D007138 7.6e-75 284.6 234 64.5
MELO3C025845.2 Cucumis melo HOM05D005913 ORTHO05D007138 9.9e-75 284.3 242 60.7
CsaV3_6G016190 Cucumis sativus L. HOM05D005913 ORTHO05D007138 4.9e-74 282.0 233 61.4
FAN21G0630 Fragaria x ananassa HOM05D005913 ORTHO05D007138 4.9e-74 282.0 268 58.2
FAN25G2063 Fragaria x ananassa HOM05D005913 ORTHO05D007138 4.9e-74 282.0 268 58.2
Haze_24336 Corylus avellana HOM05D005913 ORTHO05D007138 1.1e-73 280.8 260 58.8
Cc01_g14290 Coffea canephora HOM05D005913 ORTHO05D007138 1.4e-73 280.4 222 66.7
DCAR_012499 Daucus carota HOM05D005913 ORTHO05D007138 2.7e-72 276.2 238 63.4
arahy.Tifrunner.gnm1.ann1.6RYY2X Arachis hypogaea HOM05D005913 ORTHO05D007138 4.6e-72 275.4 229 63.8
DCAR_002129 Daucus carota HOM05D005913 ORTHO05D007138 1.3e-71 273.9 284 57.7
FAN16G2194 Fragaria x ananassa HOM05D005913 ORTHO05D007138 3.9e-71 272.3 269 58.0
CANSAT56G2716 Cannabis sativa HOM05D005913 ORTHO05D007138 6.7e-71 271.6 254 58.7
Lalb_Chr19g0128221 Lupinus albus HOM05D005913 ORTHO05D007138 6.7e-71 271.6 266 57.1
Actinidia16099 Actinidia chinensis HOM05D005913 ORTHO05D007138 1.1e-70 270.8 211 66.4
Eucgr.J01039 Eucalyptus grandis HOM05D005913 ORTHO05D007138 1.5e-70 270.4 261 58.6
RcHm_v2.0_Chr5g0069871 Rosa chinensis HOM05D005913 ORTHO05D007138 3.3e-70 269.2 269 56.5
Gohir.D13G228900 Gossypium hirsutum HOM05D005913 ORTHO05D007138 7.4e-70 268.1 257 58.4
Gorai.013G259900 Gossypium raimondii HOM05D005913 ORTHO05D007138 7.4e-70 268.1 257 58.8
AUR62020144 Chenopodium quinoa HOM05D005913 ORTHO05D007138 1.3e-69 267.3 219 63.9
TAR369G0609 Trochodendron aralioides HOM05D005913 ORTHO05D007138 1.4e-68 263.8 243 60.5
AUR62001638 Chenopodium quinoa HOM05D005913 ORTHO05D007138 3.1e-68 262.7 220 63.6
LjContig00155g0009730 Lotus japonicus HOM05D005913 ORTHO05D007138 1.7e-66 256.9 254 57.9
Cpa.g.sc112.8 Carica papaya HOM05D005913 ORTHO05D007138 2.2e-66 256.5 268 56.0
Hund09257 Selenicereus undatus HOM05D005913 ORTHO05D007138 2.9e-66 256.1 269 55.0
Gohir.A13G224200 Gossypium hirsutum HOM05D005913 ORTHO05D007138 3.8e-66 255.8 257 56.8
Aqoxy4G02545 Aquilegia oxysepala HOM05D005913 ORTHO05D007138 4.9e-66 255.4 269 54.3
Manes.10G106300 Manihot esculenta HOM05D005913 ORTHO05D007138 6.5e-66 255.0 253 55.7
PGR044G1475 Punica granatum HOM05D005913 ORTHO05D007138 1.1e-65 254.2 219 61.2
Ciclev10029073m.g Citrus clementina HOM05D005913 ORTHO05D007138 5.5e-65 251.9 258 57.0
Ca_09509_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 9.3e-65 251.1 254 56.7
Ca_30058_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 9.3e-65 251.1 254 56.7
Psat3g002480 Pisum sativum HOM05D005913 ORTHO05D007138 3.5e-64 249.2 214 62.6
Potri.006G170500 Populus trichocarpa HOM05D005913 ORTHO05D007138 3.5e-64 249.2 242 58.3
Medtr7g117410 Medicago truncatula HOM05D005913 ORTHO05D007138 6.0e-64 248.4 214 61.7
Sabra06G0131300 Salix brachista HOM05D005913 ORTHO05D007138 7.9e-64 248.1 231 59.7
VMungo0647G0764 Vigna mungo HOM05D005913 ORTHO05D007138 7.9e-64 248.1 256 54.7
ATR0681G105 Amborella trichopoda HOM05D005913 ORTHO05D007138 5.7e-62 241.9 224 58.5
Glyma.05G235600 Glycine max HOM05D005913 ORTHO05D007138 4.8e-61 238.8 256 55.1
EL10Ac7g16180 Beta vulgaris HOM05D005913 ORTHO05D007138 8.2e-61 238.0 269 52.4
COL.COLO4_19170 Corchorus olitorius HOM05D005913 ORTHO05D001548 5.3e-60 235.3 249 57.0
PSO801G0017 Papaver somniferum HOM05D005913 ORTHO05D007138 5.3e-60 235.3 256 53.5
PSO339G4526 Papaver somniferum HOM05D005913 ORTHO05D007138 6.9e-60 235.0 256 54.3
PSO675G7356 Papaver somniferum HOM05D005913 ORTHO05D007138 2.0e-59 233.4 218 58.3
QL01p038500 Quercus lobata HOM05D005913 ORTHO05D007138 5.9e-59 231.9 219 61.2
Phvul.001G033300 Phaseolus vulgaris HOM05D005913 ORTHO05D007138 1.7e-58 230.3 173 68.8
HPP92_028632 Vanilla planifolia HOM05D005913 ORTHO05D007138 1.7e-58 230.3 239 55.6
CDE04G2145 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 3.8e-58 229.2 200 63.5
Lj4A493T9 Lonicera japonica HOM05D005913 ORTHO05D007138 6.5e-58 228.4 231 56.3
Thhalv10008508m.g Eutrema salsugineum HOM05D005913 ORTHO05D007138 2.4e-52 209.9 258 49.6
SalBow6G3913 Salvia bowleyana HOM05D005913 ORTHO05D007138 2.4e-52 209.9 359 41.5
Ah.15g099480 Amaranthus hybridus HOM05D005913 ORTHO05D007138 9.1e-52 208.0 207 54.6
CARHR006930 Cardamine hirsuta HOM05D005913 ORTHO05D007138 2.6e-51 206.5 238 50.4
HPP92_002930 Vanilla planifolia HOM05D005913 ORTHO05D007138 2.6e-51 206.5 239 51.9
C05p05290 Brassica napus HOM05D005913 ORTHO05D007138 3.4e-51 206.1 206 55.8
BolC5t29300H Brassica oleracea HOM05D005913 ORTHO05D007138 3.4e-51 206.1 206 55.8
A10p05770 Brassica napus HOM05D005913 ORTHO05D007138 1.3e-50 204.1 206 55.8
BraA10t42838Z Brassica rapa HOM05D005913 ORTHO05D007138 1.3e-50 204.1 206 55.8
CDE04G2770 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 6.5e-50 201.8 199 58.8
Sp1g05970 Schrenkiella parvula HOM05D005913 ORTHO05D007138 1.9e-49 200.3 261 49.8
Aa31LG1G6450 Aethionema arabicum HOM05D005913 ORTHO05D007138 4.7e-48 195.7 253 47.4
AT1G07210 Arabidopsis thaliana HOM05D005913 ORTHO05D007138 6.1e-48 195.3 236 51.7
A09p66580 Brassica napus HOM05D005913 ORTHO05D007138 2.3e-47 193.4 222 53.2
BraA09t41996Z Brassica rapa HOM05D005913 ORTHO05D007138 3.0e-47 193.0 197 57.4
C08p50760 Brassica napus HOM05D005913 ORTHO05D007138 5.1e-47 192.2 229 51.5
BolC8t52604H Brassica oleracea HOM05D005913 ORTHO05D007138 6.7e-47 191.8 221 52.5
Os10g0500500 Oryza sativa ssp. japonica HOM05D005913 ORTHO05D007138 8.8e-47 191.4 221 50.7
AL1G17350 Arabidopsis lyrata HOM05D005913 ORTHO05D007138 1.5e-46 190.7 236 50.0
BcaC07g42020 Brassica carinata HOM05D005913 ORTHO05D007138 2.6e-46 189.9 229 51.1
Carub.0001s0651 Capsella rubella HOM05D005913 ORTHO05D007138 2.6e-46 189.9 261 47.9
unitig_26.g9973 Utricularia gibba HOM05D005913 ORTHO05D007138 8.2e-45 184.9 118 78.0
BcaC07g42452 Brassica carinata HOM05D005913 ORTHO05D007138 2.0e-43 180.3 175 58.3
Zm00001eb012770 Zea mays HOM05D005913 ORTHO05D007138 2.2e-42 176.8 239 45.6
TPR.G37238 Trifolium pratense HOM05D005913 ORTHO05D007138 2.1e-40 170.2 224 48.7
Zm00001eb142300 Zea mays HOM05D005913 ORTHO05D007138 1.4e-39 167.5 160 59.4
MD03G1068700 Malus domestica HOM05D005913 ORTHO05D007138 1.1e-38 164.5 98 83.7
BcaB07g33371 Brassica carinata HOM05D005913 ORTHO05D007138 4.7e-32 142.5 157 50.3
BcaC07g42451 Brassica carinata HOM05D005913 ORTHO05D007138 6.1e-32 142.1 97 74.2
TPR.G4738 Trifolium pratense HOM05D005913 ORTHO05D007138 1.2e-27 127.9 184 44.0
Atru.chr3.4201 Acer truncatum HOM05D005913 ORTHO05D007138 5.0e-26 122.5 177 45.2
TPR.G3936 Trifolium pratense HOM05D005913 ORTHO05D007138 2.5e-25 120.2 70 85.7
MD03G1068600 Malus domestica HOM05D005913 ORTHO05D007138 4.2e-25 119.4 122 54.9
SEGI_23907 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 7.2e-25 118.6 158 48.1
arahy.Tifrunner.gnm1.ann1.6CR394 Arachis hypogaea HOM05D005913 ORTHO05D007138 1.2e-24 117.9 73 79.5
ClCG02G019520 Citrullus lanatus HOM05D005913 ORTHO05D007138 1.2e-24 117.9 116 52.6
Mapoly0046s0093 Marchantia polymorpha HOM05D005913 ORTHO05D007138 4.4e-22 109.4 211 38.9
SEGI_13957 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 7.5e-22 108.6 75 72.0
Pp3c9_1670 Physcomitrium patens HOM05D005913 ORTHO05D007138 2.2e-21 107.1 203 37.9
Atru.chr3.4202 Acer truncatum HOM05D005913 ORTHO05D007138 4.8e-21 105.9 68 77.9
AagrBONN_evm.TU.Sc2ySwM_362.942 Anthoceros agrestis HOM05D005913 ORTHO05D007138 1.7e-18 97.4 235 33.6
Solyc01g058530.4 Solanum lycopersicum HOM05D005913 ORTHO05D007138 6.6e-18 95.5 63 77.8
Peaxi162Scf00378g00212 Petunia axillaris HOM05D000011 ORTHO05D010520 2.3e-15 87.0 48 93.8
TPR.G39004 Trifolium pratense HOM05D006629 ORTHO05D008430 1.0e-10 71.6 106 42.5
CBR_g41534 Chara braunii HOM05D005913 ORTHO05D007138 1.1e-09 68.2 70 52.9
SHI19145 Sapria himalayana HOM05D000002 ORTHO05D000001 2.1e-08 63.9 91 39.6
CARHR102160 Cardamine hirsuta HOM05D005913 ORTHO05D007138 1.2e-06 58.2 93 43.0


User provided reference genes

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