Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402010988 Solanum tuberosum HOM05D002855 ORTHO05D004406 4.0e-116 421.4 205 100.0
Sopen10g033890 Solanum pennellii HOM05D002855 ORTHO05D004406 1.5e-102 376.3 205 90.2
Sopen10g033920 Solanum pennellii HOM05D002855 ORTHO05D004406 4.3e-102 374.8 205 90.2
Sopen06g015700 Solanum pennellii HOM05D002855 ORTHO05D004406 3.4e-99 365.2 203 89.7
Sopen10g033910 Solanum pennellii HOM05D002855 ORTHO05D004406 2.3e-95 352.4 205 83.4
Sopen06g015720 Solanum pennellii HOM05D002855 ORTHO05D004406 2.4e-92 342.4 200 82.5
Sopen10g033900 Solanum pennellii HOM05D002855 ORTHO05D004406 6.9e-92 340.9 314 59.2
Sopen06g015670 Solanum pennellii HOM05D002855 ORTHO05D004406 2.9e-82 308.9 176 87.5
Sopen06g015680 Solanum pennellii HOM05D002855 ORTHO05D004406 2.9e-82 308.9 176 87.5
Sopen06g015690 Solanum pennellii HOM05D002855 ORTHO05D004406 1.4e-81 306.6 184 79.9
Nitab4.5_0000202g0400 Nicotiana tabacum HOM05D002855 ORTHO05D004406 2.2e-58 229.6 171 65.5
Nitab4.5_0011917g0020 Nicotiana tabacum HOM05D002855 ORTHO05D004406 5.0e-58 228.4 171 65.5
Peaxi162Scf00472g00082 Petunia axillaris HOM05D002855 ORTHO05D004406 8.5e-58 227.6 171 63.2
Potri.001G233800 Populus trichocarpa HOM05D002855 ORTHO05D004406 2.3e-55 219.5 168 62.5
Duzib168G0993 Durio zibethinus HOM05D002855 ORTHO05D004406 3.0e-55 219.2 173 61.8
Phvul.L002003 Phaseolus vulgaris HOM05D002855 ORTHO05D004406 3.9e-55 218.8 168 61.9
Sabra16G0140100 Salix brachista HOM05D002855 ORTHO05D004406 3.9e-55 218.8 168 62.5
VMungo1080G0735 Vigna mungo HOM05D002855 ORTHO05D004406 3.9e-55 218.8 168 61.9
Psat5g281800 Pisum sativum HOM05D002855 ORTHO05D004406 6.7e-55 218.0 168 61.9
MD03G1106200 Malus domestica HOM05D002855 ORTHO05D004406 8.7e-55 217.6 168 61.3
Prupe.6G088700 Prunus persica HOM05D002855 ORTHO05D004406 8.7e-55 217.6 168 61.3
QL01p035172 Quercus lobata HOM05D002855 ORTHO05D004406 1.1e-54 217.2 174 60.9
THA.LOC104810821 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 1.1e-54 217.2 168 61.9
arahy.Tifrunner.gnm1.ann1.3PXT9K Arachis hypogaea HOM05D002855 ORTHO05D004406 1.5e-54 216.9 168 60.7
arahy.Tifrunner.gnm1.ann1.R78DWG Arachis hypogaea HOM05D002855 ORTHO05D004406 1.5e-54 216.9 168 60.7
Ca_01364_v3 Cicer arietinum L. HOM05D002855 ORTHO05D004406 1.5e-54 216.9 168 61.3
Eucgr.B02434 Eucalyptus grandis HOM05D002855 ORTHO05D004406 1.5e-54 216.9 174 60.9
Sabra09G0017300 Salix brachista HOM05D002855 ORTHO05D004406 1.5e-54 216.9 178 60.1
TAR633G1422 Trochodendron aralioides HOM05D002855 ORTHO05D004406 1.5e-54 216.9 168 61.9
Aqoxy4G03112 Aquilegia oxysepala HOM05D002855 ORTHO05D004406 1.9e-54 216.5 168 61.3
RcHm_v2.0_Chr5g0062031 Rosa chinensis HOM05D002855 ORTHO05D004406 1.9e-54 216.5 168 60.7
Dinv32829 Davidia involucrata HOM05D002855 ORTHO05D004406 2.5e-54 216.1 174 60.3
Glyma.15G043500 Glycine max HOM05D002855 ORTHO05D004406 2.5e-54 216.1 168 60.7
Lalb_Chr22g0350071 Lupinus albus HOM05D002855 ORTHO05D004406 2.5e-54 216.1 168 60.7
vmacro14496 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 2.5e-54 216.1 178 59.6
CSS0016445 Camellia sinensis var. sinensis HOM05D002855 ORTHO05D004406 3.3e-54 215.7 168 61.3
CiPaw.13G102800 Carya illinoinensis HOM05D002855 ORTHO05D004406 3.3e-54 215.7 168 60.7
Migut.N02644 Erythranthe guttata HOM05D002855 ORTHO05D004406 3.3e-54 215.7 168 59.5
Glyma.13G330500 Glycine max HOM05D002855 ORTHO05D004406 3.3e-54 215.7 168 60.7
Manes.11G137500 Manihot esculenta HOM05D002855 ORTHO05D004406 3.3e-54 215.7 168 61.3
SHI05981 Sapria himalayana HOM05D002855 ORTHO05D004406 3.3e-54 215.7 174 59.8
TPR.G11598 Trifolium pratense HOM05D002855 ORTHO05D004406 3.3e-54 215.7 168 60.7
TWI75G0055 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 3.3e-54 215.7 168 61.3
TWI79G0463 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 3.3e-54 215.7 168 61.3
MSTRG.18613 Avicennia marina HOM05D002855 ORTHO05D004406 4.3e-54 215.3 168 60.7
CANSAT54G2256 Cannabis sativa HOM05D002855 ORTHO05D004406 4.3e-54 215.3 168 60.7
Ciclev10027686m.g Citrus clementina HOM05D002855 ORTHO05D004406 4.3e-54 215.3 178 59.0
Dinv18704 Davidia involucrata HOM05D002855 ORTHO05D004406 4.3e-54 215.3 174 59.8
Gohir.A05G099600 Gossypium hirsutum HOM05D002855 ORTHO05D004406 4.3e-54 215.3 168 60.7
Gorai.009G103400 Gossypium raimondii HOM05D002855 ORTHO05D004406 4.3e-54 215.3 168 60.7
Manes.04G028200 Manihot esculenta HOM05D002855 ORTHO05D004406 4.3e-54 215.3 168 60.7
Gohir.A08G000105 Gossypium hirsutum HOM05D002855 ORTHO05D004406 5.7e-54 214.9 168 60.7
Lalb_Chr22g0350101 Lupinus albus HOM05D002855 ORTHO05D004406 5.7e-54 214.9 168 60.1
Nn2g10571 Nelumbo nucifera HOM05D002855 ORTHO05D004406 5.7e-54 214.9 168 60.7
Oeu041006.2 Olea europaea HOM05D002855 ORTHO05D004406 5.7e-54 214.9 168 61.3
Potri.009G026100 Populus trichocarpa HOM05D002855 ORTHO05D004406 5.7e-54 214.9 168 61.9
Cc01_g11990 Coffea canephora HOM05D002855 ORTHO05D004406 7.4e-54 214.5 174 59.2
COL.COLO4_18410 Corchorus olitorius HOM05D002855 ORTHO05D004406 7.4e-54 214.5 168 60.1
Duzib170G0969 Durio zibethinus HOM05D002855 ORTHO05D004406 7.4e-54 214.5 173 59.0
Gohir.D08G009200 Gossypium hirsutum HOM05D002855 ORTHO05D004406 7.4e-54 214.5 168 60.7
Gorai.004G002400 Gossypium raimondii HOM05D002855 ORTHO05D004406 7.4e-54 214.5 168 60.7
Hma1.2p1_0746F.1_g212280 Hydrangea macrophylla HOM05D002855 ORTHO05D004406 7.4e-54 214.5 174 60.9
Rhsim01G0223400 Rhododendron simsii HOM05D002855 ORTHO05D004406 7.4e-54 214.5 178 58.4
Thecc.09G332800 Theobroma cacao HOM05D002855 ORTHO05D004406 7.4e-54 214.5 168 61.3
Atru.chr3.3777 Acer truncatum HOM05D002855 ORTHO05D004406 9.7e-54 214.2 178 59.0
Gohir.D05G099500 Gossypium hirsutum HOM05D002855 ORTHO05D004406 9.7e-54 214.2 168 60.1
Lj3g0004926 Lotus japonicus HOM05D002855 ORTHO05D004406 9.7e-54 214.2 168 60.1
MD11G1118300 Malus domestica HOM05D002855 ORTHO05D004406 9.7e-54 214.2 168 60.7
CiPaw.13G103000 Carya illinoinensis HOM05D002855 ORTHO05D004406 1.3e-53 213.8 168 60.1
Hma1.2p1_0035F.1_g021730 Hydrangea macrophylla HOM05D002855 ORTHO05D004406 1.3e-53 213.8 176 59.1
Medtr2g096000 Medicago truncatula HOM05D002855 ORTHO05D004406 1.3e-53 213.8 168 60.1
SalBow3G0437 Salvia bowleyana HOM05D002855 ORTHO05D004406 1.3e-53 213.8 168 60.1
Nn2g12814 Nelumbo nucifera HOM05D002855 ORTHO05D004406 1.6e-53 213.4 168 60.7
Cpa.g.sc139.9 Carica papaya HOM05D002855 ORTHO05D004406 2.2e-53 213.0 168 60.1
PGR102G1726 Punica granatum HOM05D002855 ORTHO05D004406 2.2e-53 213.0 168 60.7
TAR369G1034 Trochodendron aralioides HOM05D002855 ORTHO05D004406 2.2e-53 213.0 168 59.5
Cfa011411 Carpinus fangiana HOM05D002855 ORTHO05D004406 2.8e-53 212.6 168 59.5
FvH4_3g34430 Fragaria vesca HOM05D002855 ORTHO05D004406 2.8e-53 212.6 168 59.5
FAN11G1910 Fragaria x ananassa HOM05D002855 ORTHO05D004406 2.8e-53 212.6 168 59.5
FAN16G1875 Fragaria x ananassa HOM05D002855 ORTHO05D004406 2.8e-53 212.6 168 59.5
FAN21G1667 Fragaria x ananassa HOM05D002855 ORTHO05D004406 2.8e-53 212.6 168 59.5
FAN25G2944 Fragaria x ananassa HOM05D002855 ORTHO05D004406 2.8e-53 212.6 168 59.5
Sc12g0001880 Simmondsia chinensis HOM05D002855 ORTHO05D004406 2.8e-53 212.6 168 60.1
AL5G24520 Arabidopsis lyrata HOM05D002855 ORTHO05D004406 3.7e-53 212.2 168 61.3
AT3G45830 Arabidopsis thaliana HOM05D002855 ORTHO05D004406 3.7e-53 212.2 168 61.3
Migut.D02157 Erythranthe guttata HOM05D002855 ORTHO05D004406 3.7e-53 212.2 168 59.5
SGA_v2.0_scaffold194G40747 Striga asiatica HOM05D002855 ORTHO05D004406 3.7e-53 212.2 168 59.5
MBI14_g42162_MAGBIO Magnolia biondii HOM05D002855 ORTHO05D004406 4.8e-53 211.8 168 60.1
Rhsim01G0216000 Rhododendron simsii HOM05D002855 ORTHO05D004406 4.8e-53 211.8 178 57.9
Carub.0005s1167 Capsella rubella HOM05D002855 ORTHO05D004406 8.2e-53 211.1 168 60.7
Gohir.A03G036400 Gossypium hirsutum HOM05D002855 ORTHO05D004406 8.2e-53 211.1 168 59.5
Gohir.D03G131800 Gossypium hirsutum HOM05D002855 ORTHO05D004406 8.2e-53 211.1 168 59.5
Gorai.003G138700 Gossypium raimondii HOM05D002855 ORTHO05D004406 8.2e-53 211.1 168 59.5
EL10Ac7g15933 Beta vulgaris HOM05D002855 ORTHO05D004406 1.1e-52 210.7 173 58.4
Haze_23986 Corylus avellana HOM05D002855 ORTHO05D004406 1.1e-52 210.7 168 58.9
Haze_23987 Corylus avellana HOM05D002855 ORTHO05D004406 1.1e-52 210.7 168 58.9
Peaxi162Scf00836g00219 Petunia axillaris HOM05D002855 ORTHO05D004406 1.1e-52 210.7 168 59.5
TAR623G1741 Trochodendron aralioides HOM05D002855 ORTHO05D004406 1.4e-52 210.3 168 60.1
unitig_899.g14902 Utricularia gibba HOM05D002855 ORTHO05D004406 1.4e-52 210.3 168 58.3
CsaV3_6G022000 Cucumis sativus L. HOM05D002855 ORTHO05D004406 1.8e-52 209.9 178 57.3
ClCG02G020560 Citrullus lanatus HOM05D002855 ORTHO05D004406 2.4e-52 209.5 168 58.9
MELO3C025710.2 Cucumis melo HOM05D002855 ORTHO05D004406 2.4e-52 209.5 168 58.9
Nitab4.5_0002380g0080 Nicotiana tabacum HOM05D002855 ORTHO05D004406 2.4e-52 209.5 178 57.3
Nitab4.5_0003784g0030 Nicotiana tabacum HOM05D002855 ORTHO05D004406 2.4e-52 209.5 178 57.3
Solyc11g072810.2 Solanum lycopersicum HOM05D002855 ORTHO05D004406 2.4e-52 209.5 178 57.3
Sopen11g030480 Solanum pennellii HOM05D002855 ORTHO05D004406 2.4e-52 209.5 178 57.3
PGSC0003DMG400015522 Solanum tuberosum HOM05D002855 ORTHO05D004406 2.4e-52 209.5 178 57.3
AUR62001859 Chenopodium quinoa HOM05D002855 ORTHO05D004406 3.1e-52 209.1 173 57.8
AUR62009654 Chenopodium quinoa HOM05D002855 ORTHO05D004406 3.1e-52 209.1 173 57.8
DCAR_018861 Daucus carota HOM05D002855 ORTHO05D004406 4.1e-52 208.8 168 58.3
Lsat_1_v5_gn_5_166940 Lactuca sativa HOM05D002855 ORTHO05D004406 4.1e-52 208.8 168 58.9
Actinidia14088 Actinidia chinensis HOM05D002855 ORTHO05D004406 6.9e-52 208.0 169 59.8
HPP92_001698 Vanilla planifolia HOM05D002855 ORTHO05D004406 6.9e-52 208.0 168 58.3
ATR0594G221 Amborella trichopoda HOM05D002855 ORTHO05D004406 9.1e-52 207.6 168 58.3
CDE02G2912 Ceratophyllum demersum HOM05D002855 ORTHO05D004406 9.1e-52 207.6 168 58.3
PSO384G0780 Papaver somniferum HOM05D002855 ORTHO05D004406 9.1e-52 207.6 168 58.3
CAN.G84.3 Capsicum annuum HOM05D002855 ORTHO05D004406 1.2e-51 207.2 168 58.3
ECA248G3817 Erigeron canadensis HOM05D002855 ORTHO05D004406 1.5e-51 206.8 168 58.3
Sed0021885 Sechium edule HOM05D002855 ORTHO05D004406 1.5e-51 206.8 178 56.2
CARHR154140 Cardamine hirsuta HOM05D002855 ORTHO05D004406 2.0e-51 206.5 168 58.9
DCAR_018860 Daucus carota HOM05D002855 ORTHO05D004406 2.6e-51 206.1 168 57.1
Thhalv10002373m.g Eutrema salsugineum HOM05D002855 ORTHO05D004406 2.6e-51 206.1 168 59.5
Pp3c17_22910 Physcomitrium patens HOM05D002855 ORTHO05D004406 3.4e-51 205.7 168 58.3
MBI05_g19645_MAGBIO Magnolia biondii HOM05D002855 ORTHO05D004406 4.5e-51 205.3 168 59.5
unitig_736.g22427 Utricularia gibba HOM05D002855 ORTHO05D004406 4.5e-51 205.3 168 57.1
HPP92_000643 Vanilla planifolia HOM05D002855 ORTHO05D004406 5.9e-51 204.9 168 57.7
Mapoly0002s0042 Marchantia polymorpha HOM05D002855 ORTHO05D004406 7.7e-51 204.5 168 58.9
Hund18948 Selenicereus undatus HOM05D002855 ORTHO05D004406 1.0e-50 204.1 168 58.3
HanXRQChr04g0110371 Helianthus annuus HOM05D002855 ORTHO05D004406 1.7e-50 203.4 168 57.7
THA.LOC104814856 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 2.2e-50 203.0 163 58.3
BcaB01g01053 Brassica carinata HOM05D002855 ORTHO05D004406 3.8e-50 202.2 168 57.7
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 3.8e-50 202.2 162 59.3
BcaC01g01947 Brassica carinata HOM05D002855 ORTHO05D004406 5.0e-50 201.8 168 57.7
C03p70400 Brassica napus HOM05D002855 ORTHO05D004406 5.0e-50 201.8 168 57.7
BolC3t19280H Brassica oleracea HOM05D002855 ORTHO05D004406 5.0e-50 201.8 168 57.7
Cc06_g03300 Coffea canephora HOM05D002855 ORTHO05D004406 6.5e-50 201.4 169 57.4
BraA06t25210Z Brassica rapa HOM05D002855 ORTHO05D004406 2.5e-49 199.5 168 57.1
Thecc.05G049900 Theobroma cacao HOM05D002855 ORTHO05D004406 2.5e-49 199.5 171 57.9
Ciclev10011193m.g Citrus clementina HOM05D002855 ORTHO05D004406 4.2e-49 198.7 171 56.1
Sp5g15700 Schrenkiella parvula HOM05D002855 ORTHO05D004406 9.4e-49 197.6 164 58.5
Lj2P104T63 Lonicera japonica HOM05D002855 ORTHO05D004406 2.1e-48 196.4 172 55.2
AagrBONN_evm.TU.Sc2ySwM_228.4027 Anthoceros agrestis HOM05D002855 ORTHO05D004406 7.9e-48 194.5 168 54.8
Duzib128G1501 Durio zibethinus HOM05D002855 ORTHO05D004406 2.3e-47 193.0 171 55.6
SEGI_18775 Sequoiadendron giganteum HOM05D002855 ORTHO05D004406 3.0e-47 192.6 162 57.4
Ah.08g215040 Amaranthus hybridus HOM05D002855 ORTHO05D004406 3.9e-47 192.2 149 59.7
PSO832G3558 Papaver somniferum HOM05D002855 ORTHO05D004406 6.7e-47 191.4 168 54.8
Atru.chr8.2509 Acer truncatum HOM05D002855 ORTHO05D004406 2.0e-46 189.9 167 53.3
HanXRQChr14g0429221 Helianthus annuus HOM05D002855 ORTHO05D004406 2.6e-46 189.5 159 56.0
Sc01g0003750 Simmondsia chinensis HOM05D002855 ORTHO05D004406 4.4e-46 188.7 194 51.0
COL.COLO4_10308 Corchorus olitorius HOM05D002855 ORTHO05D004406 9.7e-46 187.6 170 55.9
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 3.7e-45 185.7 174 52.9
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 3.7e-45 185.7 174 52.9
Os05g0117864 Oryza sativa ssp. japonica HOM05D002855 ORTHO05D004406 3.7e-45 185.7 175 53.1
CBR_g17672 Chara braunii HOM05D002855 ORTHO05D004406 4.8e-45 185.3 168 56.0
Zm00001eb265670 Zea mays HOM05D002855 ORTHO05D004406 8.2e-45 184.5 175 53.1
RhsimUnG0121200 Rhododendron simsii HOM05D002855 ORTHO05D004406 1.8e-44 183.3 169 53.3
Zm00001eb355300 Zea mays HOM05D002855 ORTHO05D004406 4.1e-44 182.2 175 52.0
Pp3c14_23790 Physcomitrium patens HOM05D002855 ORTHO05D004406 1.2e-43 180.6 168 54.2
RcHm_v2.0_Chr3g0468071 Rosa chinensis HOM05D000001 ORTHO05D009676 1.3e-42 177.2 174 53.4
FvH4_6g14860 Fragaria vesca HOM05D002855 ORTHO05D035540 5.0e-42 175.3 159 54.7
Actinidia00807 Actinidia chinensis HOM05D002855 ORTHO05D004406 6.5e-42 174.9 130 60.8
FAN09G2794 Fragaria x ananassa HOM05D002855 ORTHO05D035540 2.3e-39 166.4 159 52.8
FvH4_6g14850 Fragaria vesca HOM05D002855 ORTHO05D004406 1.1e-38 164.1 173 48.0
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 5.7e-38 161.8 173 47.4
Actinidia37270 Actinidia chinensis HOM05D002855 ORTHO05D004406 8.2e-37 157.9 142 57.0
Prupe.6G245300 Prunus persica HOM05D002855 ORTHO05D004406 1.0e-34 151.0 138 53.6
CSS0021829 Camellia sinensis var. sinensis HOM05D002855 ORTHO05D004406 8.5e-34 147.9 124 62.1
Dinv37233 Davidia involucrata HOM05D002855 ORTHO05D004406 2.5e-33 146.4 97 67.0
Actinidia07087 Actinidia chinensis HOM05D002855 ORTHO05D004406 4.2e-33 145.6 168 46.4
SMO118G0514 Selaginella moellendorffii HOM05D002855 ORTHO05D004406 1.4e-31 140.6 116 60.3
FAN09G4588 Fragaria x ananassa HOM05D000001 ORTHO05D009676 6.7e-31 138.3 173 44.5
Lj2E1045T0 Lonicera japonica HOM05D002855 ORTHO05D004406 3.1e-20 102.8 71 62.0
Gorai.001G248600 Gossypium raimondii HOM05D002855 ORTHO05D004406 4.5e-19 99.0 139 42.4
Gohir.D13G096325 Gossypium hirsutum HOM05D002855 ORTHO05D004406 5.5e-17 92.0 139 40.3
vmacro20088 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 4.7e-16 89.0 156 34.6
Actinidia03767 Actinidia chinensis HOM05D002855 ORTHO05D004406 5.2e-15 85.5 87 48.3
CDE09G0123 Ceratophyllum demersum HOM05D002855 ORTHO05D004406 1.8e-12 77.0 168 30.4
FAN05G2826 Fragaria x ananassa HOM05D000001 ORTHO05D009676 3.1e-12 76.3 66 50.0


User provided reference genes

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