Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402009929 Solanum tuberosum HOM05D000790 ORTHO05D007702 7.7e-120 433.7 202 100.0
PGSC0003DMG400010010 Solanum tuberosum HOM05D000790 ORTHO05D007702 1.6e-101 372.9 203 89.7
Solyc04g082940.3 Solanum lycopersicum HOM05D000790 ORTHO05D007702 1.6e-96 356.3 203 86.7
Sopen04g036570 Solanum pennellii HOM05D000790 ORTHO05D007702 1.6e-96 356.3 203 86.7
Peaxi162Scf00385g00096 Petunia axillaris HOM05D000790 ORTHO05D007702 2.0e-88 329.3 203 79.8
Nitab4.5_0009514g0010 Nicotiana tabacum HOM05D000790 ORTHO05D007702 1.3e-82 310.1 203 76.4
CAN.G1330.28 Capsicum annuum HOM05D000790 ORTHO05D007702 1.1e-81 307.0 203 76.4
Actinidia17094 Actinidia chinensis HOM05D000790 ORTHO05D007702 1.6e-61 240.0 201 61.2
Actinidia15545 Actinidia chinensis HOM05D000790 ORTHO05D007702 9.8e-59 230.7 201 59.2
MSTRG.24897 Avicennia marina HOM05D000790 ORTHO05D007702 7.1e-57 224.6 197 56.9
TWI56G0540 Tripterygium wilfordii HOM05D000790 ORTHO05D007702 2.1e-56 223.0 197 58.9
FvH4_5g26520 Fragaria vesca HOM05D000790 ORTHO05D007702 7.8e-56 221.1 200 59.0
FAN04G2460 Fragaria x ananassa HOM05D000790 ORTHO05D007702 7.8e-56 221.1 200 59.0
FAN13G0773 Fragaria x ananassa HOM05D000790 ORTHO05D007702 7.8e-56 221.1 200 59.0
FAN18G0268 Fragaria x ananassa HOM05D000790 ORTHO05D007702 7.8e-56 221.1 200 59.0
MD00G1031500 Malus domestica HOM05D000790 ORTHO05D007702 1.0e-55 220.7 189 58.7
Glyma.20G006200 Glycine max HOM05D000790 ORTHO05D007702 1.5e-54 216.9 193 58.5
Oeu035779.1 Olea europaea HOM05D000790 ORTHO05D007702 1.9e-54 216.5 199 55.3
Sabra05G0200400 Salix brachista HOM05D000790 ORTHO05D007702 1.9e-54 216.5 191 57.6
Lj2g0003125 Lotus japonicus HOM05D000790 ORTHO05D007702 2.5e-54 216.1 194 55.7
Thecc.05G159900 Theobroma cacao HOM05D000790 ORTHO05D007702 4.3e-54 215.3 199 56.3
Glyma.07G159100 Glycine max HOM05D000790 ORTHO05D007702 5.6e-54 214.9 191 59.2
DCAR_009856 Daucus carota HOM05D000790 ORTHO05D007702 7.3e-54 214.5 199 55.3
Manes.18G000825 Manihot esculenta HOM05D000790 ORTHO05D007702 7.3e-54 214.5 191 55.0
vmacro21740 Vaccinium macrocarpon HOM05D000790 ORTHO05D007702 7.3e-54 214.5 191 58.1
Duzib093G0163 Durio zibethinus HOM05D000790 ORTHO05D007702 9.5e-54 214.2 192 56.2
Dinv02626 Davidia involucrata HOM05D000790 ORTHO05D007702 1.6e-53 213.4 174 62.6
Prupe.5G002200 Prunus persica HOM05D000790 ORTHO05D007702 1.6e-53 213.4 198 57.1
Duzib106G1474 Durio zibethinus HOM05D000790 ORTHO05D007702 2.8e-53 212.6 191 56.5
RcHm_v2.0_Chr7g0217421 Rosa chinensis HOM05D000790 ORTHO05D007702 4.7e-53 211.8 176 62.5
MD06G1001400 Malus domestica HOM05D000790 ORTHO05D007702 1.1e-52 210.7 198 55.6
Migut.C00338 Erythranthe guttata HOM05D000790 ORTHO05D007702 3.1e-52 209.1 180 61.1
Phvul.003G008600 Phaseolus vulgaris HOM05D000790 ORTHO05D007702 3.1e-52 209.1 191 57.1
VMungo1215G3008 Vigna mungo HOM05D000790 ORTHO05D007702 1.5e-51 206.8 191 56.5
QL02p016125 Quercus lobata HOM05D000790 ORTHO05D007702 4.4e-51 205.3 193 54.9
Rhsim06G0001300 Rhododendron simsii HOM05D000790 ORTHO05D007702 4.4e-51 205.3 200 55.0
SalBow7G0878 Salvia bowleyana HOM05D000790 ORTHO05D007702 4.4e-51 205.3 163 60.7
Hma1.2p1_0810F.1_g221960 Hydrangea macrophylla HOM05D000790 ORTHO05D007702 7.6e-51 204.5 166 60.2
Potri.005G258800 Populus trichocarpa HOM05D000790 ORTHO05D007702 9.9e-51 204.1 191 57.1
ClCG11G019180 Citrullus lanatus HOM05D000790 ORTHO05D007702 1.7e-50 203.4 178 58.4
PGR031G2809 Punica granatum HOM05D000790 ORTHO05D007702 3.7e-50 202.2 200 53.5
TAR376G0392 Trochodendron aralioides HOM05D000790 ORTHO05D007702 3.7e-50 202.2 198 52.0
Ciclev10001981m.g Citrus clementina HOM05D000790 ORTHO05D007702 8.3e-50 201.1 196 53.6
Gohir.A11G311700 Gossypium hirsutum HOM05D000790 ORTHO05D007702 2.4e-49 199.5 190 54.2
Manes.05G130200 Manihot esculenta HOM05D000790 ORTHO05D007702 3.2e-49 199.1 191 52.4
ECA238G2399 Erigeron canadensis HOM05D000790 ORTHO05D007702 7.1e-49 198.0 200 53.0
Medtr1g034960 Medicago truncatula HOM05D000790 ORTHO05D007702 1.3e-47 193.7 194 54.1
CSS0047487 Camellia sinensis var. sinensis HOM05D000790 ORTHO05D007702 1.7e-47 193.4 191 51.3
MELO3C017071.2 Cucumis melo HOM05D000790 ORTHO05D007702 2.3e-47 193.0 190 54.2
TPR.G22376 Trifolium pratense HOM05D000790 ORTHO05D007702 5.1e-47 191.8 195 53.3
CsaV3_4G037770 Cucumis sativus L. HOM05D000790 ORTHO05D007702 1.5e-46 190.3 181 54.7
Gohir.D11G328350 Gossypium hirsutum HOM05D000790 ORTHO05D007702 1.5e-46 190.3 191 50.8
Gorai.007G359600 Gossypium raimondii HOM05D000790 ORTHO05D007702 1.5e-46 190.3 191 50.8
THA.LOC104809973 Tarenaya hassleriana HOM05D000790 ORTHO05D007702 5.6e-46 188.3 192 52.1
arahy.Tifrunner.gnm1.ann1.0XPL30 Arachis hypogaea HOM05D000790 ORTHO05D007702 7.3e-46 188.0 192 52.1
Psat6g132280 Pisum sativum HOM05D000790 ORTHO05D007702 2.1e-45 186.4 194 50.5
arahy.Tifrunner.gnm1.ann1.RL3IDB Arachis hypogaea HOM05D000790 ORTHO05D007702 4.7e-45 185.3 192 52.1
SGA_v2.0_scaffold26G11273 Striga asiatica HOM05D000790 ORTHO05D007702 4.7e-45 185.3 177 56.5
HanXRQChr14g0427981 Helianthus annuus HOM05D000790 ORTHO05D007702 6.2e-45 184.9 190 53.2
CANSAT25G2520 Cannabis sativa HOM05D000790 ORTHO05D007702 1.1e-44 184.1 200 51.0
Duzib128G0778 Durio zibethinus HOM05D000790 ORTHO05D007702 1.4e-44 183.7 190 50.0
GSVIVG01013453001 Vitis vinifera HOM05D000790 ORTHO05D007702 2.4e-44 183.0 194 52.1
PSO017G2965 Papaver somniferum HOM05D000790 ORTHO05D007702 1.2e-43 180.6 200 47.0
Cc10_g00110 Coffea canephora HOM05D000790 ORTHO05D007702 2.0e-43 179.9 178 55.1
Oeu025698.1 Olea europaea HOM05D000790 ORTHO05D007702 2.6e-43 179.5 194 50.5
Oeu025699.1 Olea europaea HOM05D000790 ORTHO05D007702 4.4e-43 178.7 196 51.5
Lalb_Chr10g0095261 Lupinus albus HOM05D000790 ORTHO05D007702 1.3e-42 177.2 192 47.4
Dinv05512 Davidia involucrata HOM05D000790 ORTHO05D007702 1.1e-41 174.1 171 53.2
Aqoxy6G03054 Aquilegia oxysepala HOM05D000790 ORTHO05D007702 1.4e-41 173.7 196 48.5
FAN08G0144 Fragaria x ananassa HOM05D000790 ORTHO05D007702 7.1e-41 171.4 193 51.8
Lsat_1_v5_gn_2_2780 Lactuca sativa HOM05D000790 ORTHO05D007702 9.3e-41 171.0 190 49.5
Gohir.D03G067100 Gossypium hirsutum HOM05D000790 ORTHO05D007702 2.7e-40 169.5 191 47.6
Ca_25725_v3 Cicer arietinum L. HOM05D000790 ORTHO05D007702 4.6e-40 168.7 159 56.0
Gorai.003G093400 Gossypium raimondii HOM05D000790 ORTHO05D007702 1.0e-39 167.5 191 46.6
MBI04_g22021_MAGBIO Magnolia biondii HOM05D000790 ORTHO05D007702 1.3e-39 167.2 198 42.9
Eucgr.F01949 Eucalyptus grandis HOM05D000790 ORTHO05D007702 8.7e-39 164.5 193 47.7
Gohir.A02G108500 Gossypium hirsutum HOM05D000790 ORTHO05D007702 8.7e-39 164.5 191 45.5
Sed0025270 Sechium edule HOM05D000790 ORTHO05D007702 1.9e-38 163.3 181 50.3
EL10Ac1g01846 Beta vulgaris HOM05D000790 ORTHO05D007702 2.5e-38 162.9 200 44.5
AUR62035191 Chenopodium quinoa HOM05D000790 ORTHO05D007702 2.5e-38 162.9 201 46.3
AL1G34060 Arabidopsis lyrata HOM05D000790 ORTHO05D007702 3.3e-38 162.5 176 50.6
CiPaw.07G130700 Carya illinoinensis HOM05D000790 ORTHO05D007702 3.3e-38 162.5 192 46.9
Nn5g31075 Nelumbo nucifera HOM05D000790 ORTHO05D007702 5.6e-38 161.8 168 49.4
Zm00001eb102060 Zea mays HOM05D000790 ORTHO05D007702 5.6e-38 161.8 194 43.8
CARHR021450 Cardamine hirsuta HOM05D000790 ORTHO05D007702 9.6e-38 161.0 176 51.1
Thhalv10008443m.g Eutrema salsugineum HOM05D000790 ORTHO05D007702 1.6e-37 160.2 193 45.6
AT1G20990 Arabidopsis thaliana HOM05D000790 ORTHO05D007702 8.1e-37 157.9 176 48.9
CiPaw.08G078600 Carya illinoinensis HOM05D000790 ORTHO05D007702 2.4e-36 156.4 193 46.6
Carub.0001s2047 Capsella rubella HOM05D000790 ORTHO05D007702 3.1e-36 156.0 176 48.9
Nn6g31579 Nelumbo nucifera HOM05D000790 ORTHO05D007702 4.0e-36 155.6 150 53.3
Sp1g18690 Schrenkiella parvula HOM05D000790 ORTHO05D007702 4.0e-36 155.6 176 48.9
A07p15340 Brassica napus HOM05D000790 ORTHO05D007702 2.0e-35 153.3 176 48.3
BraA07t29274Z Brassica rapa HOM05D000790 ORTHO05D007702 2.0e-35 153.3 176 48.3
Hund05065 Selenicereus undatus HOM05D000790 ORTHO05D007702 2.0e-35 153.3 200 43.0
BcaC06g34853 Brassica carinata HOM05D000790 ORTHO05D007702 2.6e-35 152.9 176 47.7
C07p22570 Brassica napus HOM05D000790 ORTHO05D007702 2.6e-35 152.9 176 47.7
C07p22630 Brassica napus HOM05D000790 ORTHO05D007702 2.6e-35 152.9 176 47.7
BolC7t42796H Brassica oleracea HOM05D000790 ORTHO05D007702 2.6e-35 152.9 176 47.7
Eucgr.F03617 Eucalyptus grandis HOM05D000790 ORTHO05D007702 4.4e-35 152.1 163 47.9
Sc15g0004010 Simmondsia chinensis HOM05D000790 ORTHO05D007702 1.3e-34 150.6 165 47.9
BcaB03g14287 Brassica carinata HOM05D000790 ORTHO05D007702 1.7e-34 150.2 177 47.5
C05p19660 Brassica napus HOM05D000790 ORTHO05D007702 2.2e-34 149.8 156 50.6
BolC5t30667H Brassica oleracea HOM05D000790 ORTHO05D007702 2.2e-34 149.8 156 50.6
A06p17030 Brassica napus HOM05D000790 ORTHO05D007702 2.9e-34 149.4 176 47.7
BraA06t24810Z Brassica rapa HOM05D000790 ORTHO05D007702 2.9e-34 149.4 176 47.7
BcaC05g26007 Brassica carinata HOM05D000790 ORTHO05D007702 3.8e-34 149.1 156 50.0
COL.COLO4_28189 Corchorus olitorius HOM05D000790 ORTHO05D007702 3.8e-34 149.1 131 56.5
CDE02G2433 Ceratophyllum demersum HOM05D000790 ORTHO05D007702 6.4e-34 148.3 199 43.2
ATR0605G280 Amborella trichopoda HOM05D000790 ORTHO05D007702 5.4e-33 145.2 199 42.2
Cfa014161 Carpinus fangiana HOM05D000790 ORTHO05D007702 1.6e-32 143.7 203 43.8
Lj4C2T2 Lonicera japonica HOM05D000790 ORTHO05D007702 1.6e-32 143.7 164 52.4
Os09g0492800 Oryza sativa ssp. japonica HOM05D000790 ORTHO05D007702 2.1e-32 143.3 209 40.2
PGR083G1789 Punica granatum HOM05D000790 ORTHO05D007702 2.7e-32 142.9 173 45.1
BcaB07g32092 Brassica carinata HOM05D000790 ORTHO05D007702 7.8e-32 141.4 175 45.1
PSO170G3378 Papaver somniferum HOM05D000790 ORTHO05D007702 3.0e-31 139.4 167 44.3
SEGI_15555 Sequoiadendron giganteum HOM05D000790 ORTHO05D007702 1.5e-30 137.1 189 41.3
SEGI_16887 Sequoiadendron giganteum HOM05D000790 ORTHO05D007702 1.5e-30 137.1 190 40.5
Zm00001eb317000 Zea mays HOM05D000790 ORTHO05D007702 4.3e-30 135.6 195 40.0
Haze_22883 Corylus avellana HOM05D000790 ORTHO05D007702 5.6e-30 135.2 201 41.8
Oeu032970.1 Olea europaea HOM05D000790 ORTHO05D007702 5.6e-30 135.2 134 53.7
unitig_26.g9848 Utricularia gibba HOM05D000790 ORTHO05D007702 6.9e-28 128.3 138 47.1
Sc15g0004290 Simmondsia chinensis HOM05D000790 ORTHO05D007702 2.9e-26 122.9 116 48.3
SEGI_38645 Sequoiadendron giganteum HOM05D000790 ORTHO05D007702 3.2e-25 119.4 150 43.3
CDE11G1132 Ceratophyllum demersum HOM05D000790 ORTHO05D007702 2.1e-24 116.7 148 45.9
SEGI_39996 Sequoiadendron giganteum HOM05D000790 ORTHO05D007702 3.0e-23 112.8 190 34.7
Sc15g0004270 Simmondsia chinensis HOM05D000790 ORTHO05D007702 1.1e-20 104.4 111 43.2
PGR004G2582 Punica granatum HOM05D000125 ORTHO05D000120 6.5e-10 68.6 96 36.5
Haze_19947 Corylus avellana HOM05D000125 ORTHO05D000120 3.2e-09 66.2 113 31.0
Gorai.005G036900 Gossypium raimondii HOM05D000125 ORTHO05D000120 1.8e-07 60.5 130 30.0
Hma1.2p1_3296F.1_g334980 Hydrangea macrophylla HOM05D000125 ORTHO05D000807 2.3e-07 60.1 142 27.5
ATR0559G212 Amborella trichopoda HOM05D000790 ORTHO05D000769 6.7e-07 58.5 95 34.7
Migut.B01372 Erythranthe guttata HOM05D000125 ORTHO05D000807 6.7e-07 58.5 115 31.3
SGA_v2.0_scaffold32G13134 Striga asiatica HOM05D000790 ORTHO05D000769 6.7e-07 58.5 100 34.0
Gohir.A11G276500 Gossypium hirsutum HOM05D000768 ORTHO05D009513 1.1e-06 57.8 126 30.2
THA.LOC104827679 Tarenaya hassleriana HOM05D000125 ORTHO05D000807 1.1e-06 57.8 135 25.9
MSTRG.20115 Avicennia marina HOM05D000790 ORTHO05D000769 1.5e-06 57.4 115 33.0
Gohir.A11G276766 Gossypium hirsutum HOM05D000768 ORTHO05D009513 1.9e-06 57.0 126 29.4
QL11p039630 Quercus lobata HOM05D000790 ORTHO05D000769 1.9e-06 57.0 106 34.9
Actinidia31705 Actinidia chinensis HOM05D000463 ORTHO05D000807 2.5e-06 56.6 120 30.0
Migut.B01373 Erythranthe guttata HOM05D000125 ORTHO05D000807 2.5e-06 56.6 103 32.0
Gohir.A11G276566 Gossypium hirsutum HOM05D000768 ORTHO05D009513 3.3e-06 56.2 101 32.7
Migut.B01371 Erythranthe guttata HOM05D000125 ORTHO05D000807 4.3e-06 55.8 142 27.5
Cc08_g04990 Coffea canephora HOM05D000125 ORTHO05D000120 5.7e-06 55.5 135 29.6
THA.LOC104799077 Tarenaya hassleriana HOM05D000125 ORTHO05D000120 5.7e-06 55.5 96 33.3
CSS0006545 Camellia sinensis var. sinensis HOM05D000125 ORTHO05D000120 7.4e-06 55.1 96 34.4
Haze_19450 Corylus avellana HOM05D000125 ORTHO05D000120 7.4e-06 55.1 98 28.6
QL04p029314 Quercus lobata HOM05D000125 ORTHO05D000120 7.4e-06 55.1 104 34.6
Oeu027594.1 Olea europaea HOM05D000790 ORTHO05D000769 9.7e-06 54.7 103 33.0


User provided reference genes

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