Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402008870 Solanum tuberosum HOM05D005118 ORTHO05D006038 6.0e-103 377.5 187 100.0
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 1.2e-74 283.5 145 94.5
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 2.6e-74 282.3 145 93.8
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 7.9e-71 270.8 145 89.0
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 5.0e-65 251.5 147 85.0
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 1.0e-54 217.2 151 73.5
Nitab4.5_0012129g0010 Nicotiana tabacum HOM05D005118 ORTHO05D006038 3.0e-54 215.7 155 72.3
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 1.4e-46 190.3 140 66.4
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 3.4e-45 185.7 140 63.6
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 2.8e-44 182.6 145 59.3
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 4.9e-44 181.8 140 58.6
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 1.1e-43 180.6 145 58.6
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 2.4e-43 179.5 140 60.7
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 5.4e-43 178.3 140 58.6
Manes.08G026600 Manihot esculenta HOM05D005118 ORTHO05D006038 7.0e-43 177.9 141 58.9
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 9.1e-43 177.6 140 60.7
Rhsim03G0074200 Rhododendron simsii HOM05D005118 ORTHO05D006038 1.6e-42 176.8 140 60.7
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 1.6e-42 176.8 145 60.7
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 3.5e-42 175.6 141 56.7
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 3.5e-42 175.6 140 61.4
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 1.0e-41 174.1 140 55.7
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 1.7e-41 173.3 140 57.9
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 2.3e-41 172.9 132 59.8
Peaxi162Scf00096g00416 Petunia axillaris HOM05D005118 ORTHO05D006038 2.3e-41 172.9 119 68.9
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 3.8e-41 172.2 140 60.0
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 3.8e-41 172.2 133 62.4
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 6.6e-41 171.4 140 60.0
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 6.6e-41 171.4 140 56.4
VMungo0720G0644 Vigna mungo HOM05D005118 ORTHO05D006038 8.6e-41 171.0 138 55.8
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.5e-40 170.2 140 60.0
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 5.6e-40 168.3 154 59.1
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 9.5e-40 167.5 137 59.1
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 1.2e-39 167.2 128 62.5
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 1.6e-39 166.8 145 56.6
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 1.6e-39 166.8 131 61.1
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 2.1e-39 166.4 131 61.1
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.8e-39 166.0 137 59.9
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 2.8e-39 166.0 145 53.1
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 2.8e-39 166.0 140 55.7
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 3.6e-39 165.6 147 55.8
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 4.7e-39 165.2 140 57.1
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 4.7e-39 165.2 137 59.9
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 4.7e-39 165.2 140 55.7
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 6.1e-39 164.9 136 61.8
vmacro07419 Vaccinium macrocarpon HOM05D005118 ORTHO05D006038 6.1e-39 164.9 137 58.4
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 8.0e-39 164.5 137 59.1
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 8.0e-39 164.5 136 61.0
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 8.0e-39 164.5 140 55.7
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 1.0e-38 164.1 135 62.2
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.0e-38 164.1 137 59.1
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 1.4e-38 163.7 140 57.9
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 1.4e-38 163.7 131 60.3
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 1.8e-38 163.3 140 55.0
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 2.3e-38 162.9 137 58.4
QL05p009399 Quercus lobata HOM05D005118 ORTHO05D006038 3.0e-38 162.5 132 59.1
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 3.0e-38 162.5 136 60.3
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 3.0e-38 162.5 118 61.0
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 4.0e-38 162.2 130 60.8
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 4.0e-38 162.2 140 52.9
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 4.0e-38 162.2 140 52.9
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 4.0e-38 162.2 135 59.3
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 4.0e-38 162.2 135 59.3
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 6.8e-38 161.4 133 58.6
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 6.8e-38 161.4 140 55.0
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 8.9e-38 161.0 135 57.8
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 8.9e-38 161.0 145 52.4
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 1.5e-37 160.2 142 56.3
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 2.6e-37 159.5 141 55.3
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 2.6e-37 159.5 140 57.1
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 5.7e-37 158.3 141 57.4
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 7.5e-37 157.9 131 61.1
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 7.5e-37 157.9 131 61.1
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 9.8e-37 157.5 145 54.5
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 1.7e-36 156.8 131 58.8
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 2.9e-36 156.0 141 56.0
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 3.7e-36 155.6 140 53.6
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 4.9e-36 155.2 119 61.3
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 4.9e-36 155.2 118 63.6
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 1.1e-35 154.1 147 51.7
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 1.8e-35 153.3 134 52.2
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 2.4e-35 152.9 136 53.7
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 3.2e-35 152.5 131 58.0
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 3.2e-35 152.5 140 55.0
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 3.2e-35 152.5 140 55.0
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 7.8e-34 147.9 128 56.2
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 2.3e-33 146.4 145 52.4
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 3.9e-33 145.6 132 56.8
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 3.9e-33 145.6 118 60.2
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 1.2e-31 140.6 140 53.6
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 6.2e-31 138.3 135 54.8
Rhsim03G0072000 Rhododendron simsii HOM05D005118 ORTHO05D006038 3.1e-30 136.0 145 50.3
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 1.2e-29 134.0 142 50.7
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 2.0e-29 133.3 126 50.8
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 4.4e-29 132.1 126 49.2
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 5.8e-29 131.7 126 50.8
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 7.5e-29 131.3 126 49.2
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 2.9e-28 129.4 131 54.2
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 4.9e-28 128.6 137 48.2
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 2.4e-27 126.3 185 38.9
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 4.1e-27 125.6 135 49.6
Hund01804 Selenicereus undatus HOM05D005118 ORTHO05D006038 1.2e-26 124.0 104 55.8
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 1.2e-26 124.0 148 45.9
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 2.7e-26 122.9 94 62.8
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 3.0e-25 119.4 132 49.2
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 3.9e-25 119.0 96 61.5
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 6.6e-25 118.2 135 48.1
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 8.6e-25 117.9 117 52.1
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 7.3e-24 114.8 111 52.3
PGR004G0063 Punica granatum HOM05D005118 ORTHO05D006038 3.6e-23 112.5 92 58.7
Mapoly0006s0252 Marchantia polymorpha HOM05D005118 ORTHO05D006038 4.7e-23 112.1 149 42.3
Pp3c5_18920 Physcomitrium patens HOM05D005118 ORTHO05D006038 8.1e-23 111.3 132 44.7
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 1.8e-22 110.2 135 45.2
Sabra06G0126100 Salix brachista HOM05D005118 ORTHO05D006038 3.1e-22 109.4 109 52.3
Dinv21192 Davidia involucrata HOM05D005118 ORTHO05D006038 4.0e-22 109.0 72 68.1
AagrBONN_evm.TU.Sc2ySwM_340.158 Anthoceros agrestis HOM05D005118 ORTHO05D006038 3.7e-20 102.4 128 43.0
Ah.16g107780 Amaranthus hybridus HOM05D005118 ORTHO05D006038 1.0e-17 94.4 86 54.7
BcaB06g29561 Brassica carinata HOM05D005118 ORTHO05D006038 9.5e-16 87.8 137 38.7
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 1.6e-15 87.0 62 64.5
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 3.6e-15 85.9 60 60.0
SMO144G0078 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 6.2e-15 85.1 122 39.3
SEGI_32763 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 6.2e-15 85.1 108 41.7
SMO118G0036 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 4.0e-14 82.4 144 37.5
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 5.2e-14 82.0 57 57.9
AUR62015050 Chenopodium quinoa HOM05D005118 ORTHO05D006038 8.9e-14 81.3 58 70.7
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 1.5e-13 80.5 58 58.6
MD14G1027400 Malus domestica HOM05D005118 ORTHO05D006038 1.5e-13 80.5 66 54.5
Haze_12101 Corylus avellana HOM05D005118 ORTHO05D006038 7.6e-13 78.2 59 59.3
FvH4_4g11630 Fragaria vesca HOM05D005118 ORTHO05D006038 6.4e-12 75.1 57 57.9
FAN12G1659 Fragaria x ananassa HOM05D005118 ORTHO05D006038 6.4e-12 75.1 57 57.9
Hund15021 Selenicereus undatus HOM05D005118 ORTHO05D006038 8.4e-12 74.7 59 61.0
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 1.9e-11 73.6 57 56.1
BcaB06g25617 Brassica carinata HOM05D005118 ORTHO05D006038 3.2e-11 72.8 48 66.7
BcaB06g25618 Brassica carinata HOM05D005118 ORTHO05D006038 3.2e-11 72.8 48 66.7
Lj2E139T0 Lonicera japonica HOM05D005118 ORTHO05D006038 1.3e-09 67.4 56 53.6
A05p34090 Brassica napus HOM05D005118 ORTHO05D006038 1.1e-06 57.8 42 61.9


User provided reference genes

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