Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402008678 Solanum tuberosum HOM05D004334 ORTHO05D004763 4.9e-30 133.7 60 100.0
Solyc02g061810.3 Solanum lycopersicum HOM05D004334 ORTHO05D004763 1.7e-27 125.2 60 93.3
Sopen02g012850 Solanum pennellii HOM05D004334 ORTHO05D004763 1.7e-27 125.2 60 93.3
CAN.G23.17 Capsicum annuum HOM05D004334 ORTHO05D004763 4.7e-25 117.1 59 86.4
CAN.G890.9 Capsicum annuum HOM05D004334 ORTHO05D004763 6.1e-25 116.7 59 86.4
Nitab4.5_0001310g0110 Nicotiana tabacum HOM05D004334 ORTHO05D004763 1.4e-24 115.5 59 84.7
Peaxi162Scf00300g00517 Petunia axillaris HOM05D004334 ORTHO05D004763 1.4e-24 115.5 59 84.7
Nitab4.5_0004994g0030 Nicotiana tabacum HOM05D004334 ORTHO05D004763 4.0e-24 114.0 59 86.4
Sopen02g027910 Solanum pennellii HOM05D004334 ORTHO05D004763 6.8e-24 113.2 59 83.1
PGSC0003DMG400001577 Solanum tuberosum HOM05D004334 ORTHO05D004763 1.2e-23 112.5 59 81.4
Solyc02g083150.3 Solanum lycopersicum HOM05D004334 ORTHO05D004763 2.0e-23 111.7 59 81.4
Nitab4.5_0000188g0270 Nicotiana tabacum HOM05D004334 ORTHO05D004763 4.4e-23 110.5 59 81.4
FAN19G0005 Fragaria x ananassa HOM05D004334 ORTHO05D004763 1.3e-22 109.0 60 78.3
FvH4_1g10780 Fragaria vesca HOM05D004334 ORTHO05D004763 1.7e-22 108.6 60 78.3
FAN28G1575 Fragaria x ananassa HOM05D004334 ORTHO05D004763 1.7e-22 108.6 60 78.3
FAN14G2747 Fragaria x ananassa HOM05D004334 ORTHO05D004763 1.1e-21 105.9 59 78.0
MD02G1121800 Malus domestica HOM05D004334 ORTHO05D004763 1.1e-21 105.9 60 75.0
FAN26G3296 Fragaria x ananassa HOM05D004334 ORTHO05D004763 1.4e-21 105.5 60 76.7
RcHm_v2.0_Chr2g0097961 Rosa chinensis HOM05D004334 ORTHO05D004763 2.4e-21 104.8 60 76.7
FvH4_6g14950 Fragaria vesca HOM05D004334 ORTHO05D004763 3.2e-21 104.4 59 76.3
Prupe.7G177700 Prunus persica HOM05D004334 ORTHO05D004763 4.1e-21 104.0 59 74.6
FAN09G1010 Fragaria x ananassa HOM05D004334 ORTHO05D004763 7.0e-21 103.2 59 74.6
FAN09G3278 Fragaria x ananassa HOM05D004334 ORTHO05D004763 7.0e-21 103.2 59 74.6
Actinidia02363 Actinidia chinensis HOM05D004334 ORTHO05D004763 2.0e-20 101.7 59 74.6
MSTRG.2739 Avicennia marina HOM05D004334 ORTHO05D004763 2.0e-20 101.7 60 78.3
Lj4A228G17 Lonicera japonica HOM05D004334 ORTHO05D004763 2.0e-20 101.7 58 75.9
Actinidia17393 Actinidia chinensis HOM05D004334 ORTHO05D004763 4.6e-20 100.5 59 74.6
MD15G1235400 Malus domestica HOM05D004334 ORTHO05D004763 4.6e-20 100.5 60 71.7
Eucgr.I02283 Eucalyptus grandis HOM05D004334 ORTHO05D004763 7.8e-20 99.8 60 71.7
Peaxi162Scf00439g00007 Petunia axillaris HOM05D004334 ORTHO05D004763 7.8e-20 99.8 55 80.0
FAN05G4181 Fragaria x ananassa HOM05D004334 ORTHO05D004763 1.0e-19 99.4 59 72.9
TAR376G1081 Trochodendron aralioides HOM05D004334 ORTHO05D004763 1.7e-19 98.6 60 73.3
CSS0034111 Camellia sinensis var. sinensis HOM05D004334 ORTHO05D004763 3.0e-19 97.8 59 71.2
CSS0049695 Camellia sinensis var. sinensis HOM05D004334 ORTHO05D004763 3.0e-19 97.8 59 71.2
Manes.03G080400 Manihot esculenta HOM05D004334 ORTHO05D004763 3.0e-19 97.8 60 70.0
CiPaw.08G179800 Carya illinoinensis HOM05D004334 ORTHO05D004763 3.9e-19 97.4 60 68.3
Gohir.D03G004200 Gossypium hirsutum HOM05D004334 ORTHO05D004763 3.9e-19 97.4 60 68.3
Gorai.003G004400 Gossypium raimondii HOM05D004334 ORTHO05D004763 3.9e-19 97.4 60 68.3
SGA_v2.0_scaffold2G00960 Striga asiatica HOM05D004334 ORTHO05D004763 3.9e-19 97.4 60 73.3
Duzib147G0009 Durio zibethinus HOM05D004334 ORTHO05D004763 8.6e-19 96.3 60 68.3
TWI73G1167 Tripterygium wilfordii HOM05D004334 ORTHO05D004763 8.6e-19 96.3 60 71.7
Sabra07G0050700 Salix brachista HOM05D004334 ORTHO05D004763 1.1e-18 95.9 60 70.0
CSS0027377 Camellia sinensis var. sinensis HOM05D004334 ORTHO05D004763 1.5e-18 95.5 59 69.5
Cfa007045 Carpinus fangiana HOM05D004334 ORTHO05D004763 1.5e-18 95.5 60 70.0
Migut.H02192 Erythranthe guttata HOM05D004334 ORTHO05D004763 1.5e-18 95.5 60 73.3
TWI53G1416 Tripterygium wilfordii HOM05D004334 ORTHO05D004763 1.9e-18 95.1 60 70.0
Lsat_1_v5_gn_4_143501 Lactuca sativa HOM05D004334 ORTHO05D004763 2.5e-18 94.7 59 69.5
Sabra05G0086000 Salix brachista HOM05D004334 ORTHO05D004763 2.5e-18 94.7 60 68.3
SGA_v2.0_scaffold108G30985 Striga asiatica HOM05D004334 ORTHO05D004763 2.5e-18 94.7 60 71.7
vmacro18446 Vaccinium macrocarpon HOM05D004334 ORTHO05D004763 3.3e-18 94.4 59 67.8
ClCG01G020710 Citrullus lanatus HOM05D004334 ORTHO05D004763 4.3e-18 94.0 60 65.0
Gohir.A11G171000 Gossypium hirsutum HOM05D004334 ORTHO05D004763 4.3e-18 94.0 60 66.7
Gohir.D11G178000 Gossypium hirsutum HOM05D004334 ORTHO05D004763 4.3e-18 94.0 60 66.7
Oeu039717.1 Olea europaea HOM05D004334 ORTHO05D004763 4.3e-18 94.0 60 65.0
Cc07_g11490 Coffea canephora HOM05D004334 ORTHO05D004763 5.6e-18 93.6 60 68.3
HanXRQChr09g0256961 Helianthus annuus HOM05D004334 ORTHO05D004763 5.6e-18 93.6 59 71.2
Thecc.01G009500 Theobroma cacao HOM05D004334 ORTHO05D004763 5.6e-18 93.6 60 66.7
MELO3C007955.2 Cucumis melo HOM05D004334 ORTHO05D004763 7.3e-18 93.2 60 61.7
Gorai.007G189900 Gossypium raimondii HOM05D004334 ORTHO05D004763 7.3e-18 93.2 60 66.7
Potri.005G104700 Populus trichocarpa HOM05D004334 ORTHO05D004763 7.3e-18 93.2 60 66.7
Oeu012549.1 Olea europaea HOM05D004334 ORTHO05D004763 9.5e-18 92.8 60 65.0
Haze_03684 Corylus avellana HOM05D004334 ORTHO05D004763 1.2e-17 92.4 60 66.7
Nn5g30900 Nelumbo nucifera HOM05D004334 ORTHO05D004763 1.2e-17 92.4 60 70.0
SalBow3G0047 Salvia bowleyana HOM05D004334 ORTHO05D004763 1.2e-17 92.4 62 69.4
CsaV3_6G047640 Cucumis sativus L. HOM05D004334 ORTHO05D004763 1.6e-17 92.0 60 63.3
CiPaw.07G005200 Carya illinoinensis HOM05D004334 ORTHO05D004763 2.1e-17 91.7 60 65.0
PGR119G0893 Punica granatum HOM05D004334 ORTHO05D004763 2.1e-17 91.7 60 65.0
QL06p052483 Quercus lobata HOM05D004334 ORTHO05D004763 2.1e-17 91.7 59 62.7
MBI08_g35872_MAGBIO Magnolia biondii HOM05D004334 ORTHO05D004763 2.8e-17 91.3 60 70.0
Rhsim08G0028900 Rhododendron simsii HOM05D004334 ORTHO05D004763 2.8e-17 91.3 59 66.1
HanXRQChr15g0487491 Helianthus annuus HOM05D004334 ORTHO05D004763 4.7e-17 90.5 60 70.0
Lj2g0016931 Lotus japonicus HOM05D004334 ORTHO05D004763 4.7e-17 90.5 60 65.0
MBI05_g39718_MAGBIO Magnolia biondii HOM05D004334 ORTHO05D004763 1.1e-16 89.4 60 65.0
Nn6g31831 Nelumbo nucifera HOM05D004334 ORTHO05D004763 1.1e-16 89.4 61 68.9
Phvul.002G112900 Phaseolus vulgaris HOM05D004334 ORTHO05D004763 1.4e-16 89.0 60 65.0
Potri.007G060100 Populus trichocarpa HOM05D004334 ORTHO05D004763 1.4e-16 89.0 59 69.5
ATR0661G230 Amborella trichopoda HOM05D004334 ORTHO05D004763 1.8e-16 88.6 60 61.7
Ciclev10025980m.g Citrus clementina HOM05D004334 ORTHO05D004763 2.3e-16 88.2 59 61.0
DCAR_011587 Daucus carota HOM05D004334 ORTHO05D004763 3.1e-16 87.8 60 65.0
CDE02G4661 Ceratophyllum demersum HOM05D004334 ORTHO05D004763 4.0e-16 87.4 59 55.9
Aqoxy6G01836 Aquilegia oxysepala HOM05D004334 ORTHO05D004763 5.2e-16 87.0 60 61.7
Ah.02g129060 Amaranthus hybridus HOM05D004334 ORTHO05D004763 6.8e-16 86.7 60 63.3
unitig_699.g19572 Utricularia gibba HOM05D004334 ORTHO05D004763 6.8e-16 86.7 62 61.3
arahy.Tifrunner.gnm1.ann1.106C79 Arachis hypogaea HOM05D004334 ORTHO05D004763 8.9e-16 86.3 60 65.0
arahy.Tifrunner.gnm1.ann1.R6TSSQ Arachis hypogaea HOM05D004334 ORTHO05D004763 8.9e-16 86.3 60 65.0
Glyma.11G082600 Glycine max HOM05D004334 ORTHO05D004763 1.5e-15 85.5 60 61.7
unitig_27.g25346 Utricularia gibba HOM05D004334 ORTHO05D004763 1.5e-15 85.5 62 62.9
EL10Ac6g13347 Beta vulgaris HOM05D004334 ORTHO05D004763 2.0e-15 85.1 59 66.1
Ca_24954_v3 Cicer arietinum L. HOM05D004334 ORTHO05D004763 2.6e-15 84.7 60 61.7
Lalb_Chr05g0212061 Lupinus albus HOM05D004334 ORTHO05D004763 3.4e-15 84.3 61 60.7
Atru.chr3.934 Acer truncatum HOM05D004334 ORTHO05D004763 5.8e-15 83.6 60 61.7
Hma1.2p1_0315F.1_g122750 Hydrangea macrophylla HOM05D004334 ORTHO05D004763 5.8e-15 83.6 55 70.9
Lalb_Chr09g0321381 Lupinus albus HOM05D002155 ORTHO05D004763 1.3e-14 82.4 61 62.3
SEGI_01463 Sequoiadendron giganteum HOM05D004334 ORTHO05D004763 2.9e-14 81.3 60 60.0
FAN23G2490 Fragaria x ananassa HOM05D004334 ORTHO05D004763 6.4e-14 80.1 52 73.1
PSO541G2607 Papaver somniferum HOM05D004334 ORTHO05D004763 6.4e-14 80.1 60 61.7
PSO675G0891 Papaver somniferum HOM05D004334 ORTHO05D004763 6.4e-14 80.1 60 61.7
THA.LOC104821351 Tarenaya hassleriana HOM05D004334 ORTHO05D004763 1.1e-13 79.3 62 59.7
Hund03662 Selenicereus undatus HOM05D004334 ORTHO05D004763 1.9e-13 78.6 58 60.3
AL5G31840 Arabidopsis lyrata HOM05D004334 ORTHO05D004763 4.1e-13 77.4 60 58.3
Thhalv10010516m.g Eutrema salsugineum HOM05D004334 ORTHO05D004763 4.1e-13 77.4 60 58.3
BcaB01g00520 Brassica carinata HOM05D004334 ORTHO05D004763 1.2e-12 75.9 60 56.7
Medtr5g023230 Medicago truncatula HOM05D004334 ORTHO05D004763 1.2e-12 75.9 60 55.0
TPR.G25124 Trifolium pratense HOM05D004334 ORTHO05D004763 1.2e-12 75.9 60 56.7
Zm00001eb250140 Zea mays HOM05D004334 ORTHO05D004763 1.2e-12 75.9 60 51.7
Carub.0005s1777 Capsella rubella HOM05D004334 ORTHO05D004763 1.6e-12 75.5 60 58.3
Os12g0480000 Oryza sativa ssp. japonica HOM05D004334 ORTHO05D004763 2.1e-12 75.1 60 53.3
AT3G51390 Arabidopsis thaliana HOM05D004334 ORTHO05D004763 2.7e-12 74.7 60 56.7
CARHR160990 Cardamine hirsuta HOM05D004334 ORTHO05D004763 3.5e-12 74.3 60 56.7
BcaNung05551 Brassica carinata HOM05D004334 ORTHO05D004763 6.0e-12 73.6 60 55.0
A09p44490 Brassica napus HOM05D004334 ORTHO05D004763 6.0e-12 73.6 60 55.0
C08p26670 Brassica napus HOM05D004334 ORTHO05D004763 6.0e-12 73.6 60 55.0
BolC8t50281H Brassica oleracea HOM05D004334 ORTHO05D004763 6.0e-12 73.6 60 55.0
BraA09t39907Z Brassica rapa HOM05D004334 ORTHO05D004763 6.0e-12 73.6 60 55.0
Zm00001eb187020 Zea mays HOM05D004334 ORTHO05D004763 6.0e-12 73.6 60 50.0
Sp5g10830 Schrenkiella parvula HOM05D004334 ORTHO05D004763 1.7e-11 72.0 60 53.3
Gohir.A02G175700 Gossypium hirsutum HOM05D004334 ORTHO05D004763 2.3e-11 71.6 44 68.2
A01p23480 Brassica napus HOM05D004334 ORTHO05D004763 3.9e-11 70.9 60 53.3
BolC1t02844H Brassica oleracea HOM05D004334 ORTHO05D004763 3.9e-11 70.9 60 53.3
BraA01t02255Z Brassica rapa HOM05D004334 ORTHO05D004763 3.9e-11 70.9 60 53.3
ECA232G0620 Erigeron canadensis HOM05D003302 ORTHO05D003785 6.6e-11 70.1 47 66.0
BcaC09g50093 Brassica carinata HOM05D004334 ORTHO05D004763 8.6e-11 69.7 59 54.2
C01p29130 Brassica napus HOM05D004334 ORTHO05D004763 8.6e-11 69.7 59 54.2
Os04g0562000 Oryza sativa ssp. japonica HOM05D004334 ORTHO05D004763 8.6e-11 69.7 60 46.7
Ah.03g134170 Amaranthus hybridus HOM05D004334 ORTHO05D004763 4.3e-10 67.4 54 55.6
BcaNung00388 Brassica carinata HOM05D004334 ORTHO05D004763 9.5e-10 66.2 62 51.6
Lsat_1_v5_gn_2_75001 Lactuca sativa HOM05D004334 ORTHO05D004763 1.2e-09 65.9 47 59.6
PGR102G0214 Punica granatum HOM05D004334 ORTHO05D004763 2.3e-08 61.6 59 47.5
Eucgr.J02517 Eucalyptus grandis HOM05D004334 ORTHO05D004763 7.6e-07 56.6 39 64.1
Pp3c2_20610 Physcomitrium patens HOM05D004334 ORTHO05D004763 6.4e-06 53.5 59 44.1


User provided reference genes

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