Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 6.2e-97 357.5 179 100.0
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 2.5e-90 335.5 179 94.4
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 9.5e-90 333.6 178 93.8
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 2.1e-89 332.4 179 93.9
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 9.9e-87 323.6 179 90.5
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.9e-82 309.3 170 91.8
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 4.9e-78 294.7 179 81.6
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 8.1e-73 277.3 179 77.1
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 2.4e-72 275.8 179 77.1
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 4.0e-72 275.0 179 76.5
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 4.0e-72 275.0 174 81.0
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 6.9e-72 274.2 178 77.0
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 7.6e-71 270.8 179 77.1
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 7.6e-71 270.8 179 76.0
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 1.3e-70 270.0 179 77.1
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 2.9e-70 268.9 178 75.8
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 2.9e-70 268.9 179 77.1
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 3.8e-70 268.5 178 74.2
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 4.9e-70 268.1 179 76.5
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 4.9e-70 268.1 179 76.5
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 4.9e-70 268.1 180 77.2
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 6.4e-70 267.7 179 75.4
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 8.4e-70 267.3 179 73.2
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 1.1e-69 266.9 179 76.5
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 1.4e-69 266.5 179 76.0
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 1.4e-69 266.5 179 73.7
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 1.9e-69 266.2 179 74.3
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 1.9e-69 266.2 179 74.3
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 1.9e-69 266.2 179 75.4
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 2.4e-69 265.8 179 73.2
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 2.4e-69 265.8 178 73.0
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 2.4e-69 265.8 178 74.7
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 2.4e-69 265.8 179 75.4
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 4.2e-69 265.0 168 78.0
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 4.2e-69 265.0 179 73.2
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 5.4e-69 264.6 178 74.7
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 7.1e-69 264.2 180 74.4
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 9.3e-69 263.8 180 75.0
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 2.1e-68 262.7 179 72.6
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 2.1e-68 262.7 178 72.5
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 2.1e-68 262.7 172 77.3
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 2.7e-68 262.3 179 70.9
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 2.7e-68 262.3 180 73.9
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 2.7e-68 262.3 177 75.1
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 3.5e-68 261.9 179 73.7
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 3.5e-68 261.9 179 74.3
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 7.9e-68 260.8 179 73.7
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.0e-67 260.4 179 73.7
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.0e-67 260.4 179 74.9
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.0e-67 260.4 179 73.7
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.0e-67 260.4 179 74.3
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 1.3e-67 260.0 179 72.1
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 1.3e-67 260.0 179 74.9
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 1.8e-67 259.6 179 70.9
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 2.3e-67 259.2 173 75.1
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.3e-67 259.2 179 72.6
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 2.3e-67 259.2 179 73.7
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 2.3e-67 259.2 179 73.7
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 2.3e-67 259.2 169 76.9
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 3.0e-67 258.8 177 74.0
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.9e-67 258.5 179 73.7
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.9e-67 258.5 179 73.2
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 3.9e-67 258.5 178 72.5
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 5.1e-67 258.1 179 73.2
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 6.7e-67 257.7 179 70.9
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 6.7e-67 257.7 179 73.2
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 6.7e-67 257.7 179 73.2
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 6.7e-67 257.7 179 72.6
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 1.1e-66 256.9 179 73.2
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 1.9e-66 256.1 179 70.9
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 1.9e-66 256.1 179 73.7
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 3.3e-66 255.4 179 70.9
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 4.3e-66 255.0 179 72.1
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 5.6e-66 254.6 179 72.1
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 7.4e-66 254.2 179 72.1
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 1.3e-65 253.4 179 70.4
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 1.3e-65 253.4 174 73.0
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 1.3e-65 253.4 179 74.9
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 1.6e-65 253.1 175 72.6
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 2.1e-65 252.7 179 71.5
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 2.8e-65 252.3 175 73.1
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 2.8e-65 252.3 179 70.9
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 3.7e-65 251.9 179 70.4
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 4.8e-65 251.5 180 71.1
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 6.2e-65 251.1 177 73.4
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 8.1e-65 250.8 179 72.1
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 1.1e-64 250.4 171 75.4
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 1.8e-64 249.6 207 66.2
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 2.4e-64 249.2 179 70.4
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 4.0e-64 248.4 179 72.1
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 5.3e-64 248.1 178 70.2
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 1.2e-63 246.9 179 71.5
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 2.0e-63 246.1 179 70.4
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 2.0e-63 246.1 171 72.5
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 3.4e-63 245.4 177 70.6
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 5.8e-63 244.6 221 61.5
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 7.6e-63 244.2 171 72.5
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 2.9e-62 242.3 165 73.9
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 3.8e-62 241.9 169 72.2
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 4.9e-62 241.5 182 68.7
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 8.4e-62 240.7 169 71.6
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 1.4e-61 240.0 178 70.2
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 1.9e-61 239.6 169 71.6
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 1.9e-61 239.6 169 71.0
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 1.9e-61 239.6 188 67.6
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 2.5e-61 239.2 169 71.6
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 2.5e-61 239.2 169 71.0
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 2.5e-61 239.2 167 72.5
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 7.1e-61 237.7 169 71.6
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 7.1e-61 237.7 175 69.1
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 2.1e-60 236.1 175 68.0
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 4.6e-60 235.0 157 76.4
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 7.9e-60 234.2 175 67.4
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 1.3e-59 233.4 175 69.7
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 2.3e-59 232.6 160 72.5
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 2.3e-59 232.6 175 69.1
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 3.9e-59 231.9 176 66.5
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 8.7e-59 230.7 179 64.2
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 1.5e-58 229.9 177 65.5
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 1.9e-58 229.6 175 67.4
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 2.1e-57 226.1 212 59.9
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 2.0e-55 219.5 171 70.8
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 2.0e-55 219.5 176 62.5
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 4.5e-55 218.4 169 66.9
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 5.0e-54 214.9 150 73.3
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 1.4e-53 213.4 150 72.7
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 1.2e-52 210.3 146 71.2
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 1.9e-50 203.0 179 60.9
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 7.2e-45 184.5 105 90.5
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 9.4e-45 184.1 163 56.4
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 6.1e-44 181.4 120 77.5
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 5.1e-43 178.3 115 80.0
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 6.7e-43 177.9 170 58.8
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 8.8e-43 177.6 163 54.6
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 5.7e-42 174.9 114 79.8
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 6.3e-41 171.4 115 74.8
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 8.2e-41 171.0 165 52.1
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 3.4e-39 165.6 168 50.0
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 3.8e-38 162.2 165 50.9
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 2.3e-35 152.9 172 50.0
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 3.0e-35 152.5 158 55.1
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 2.6e-34 149.4 160 50.6
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 3.3e-34 149.1 192 50.5
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 4.8e-33 145.2 161 47.2
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 4.1e-32 142.1 93 76.3
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 2.6e-31 139.4 86 79.1
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 2.6e-31 139.4 82 81.7
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 2.2e-30 136.3 83 79.5
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 2.9e-30 136.0 221 39.8
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.0e-27 127.5 98 69.4
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 2.0e-26 123.2 94 68.1
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 4.8e-25 118.6 138 50.0
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 5.9e-23 111.7 86 65.1
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 7.7e-23 111.3 108 59.3
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 3.8e-22 109.0 97 59.8
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 1.8e-19 100.1 75 66.7
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 1.8e-19 100.1 85 58.8
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 7.5e-18 94.7 138 45.7
vmacro15154 Vaccinium macrocarpon HOM05D004389 ORTHO05D022937 6.5e-14 81.6 54 72.2
Cfa025624 Carpinus fangiana HOM05D004389 ORTHO05D125512 7.2e-13 78.2 218 33.9
SHI18161 Sapria himalayana HOM05D004389 ORTHO05D005457 1.2e-12 77.4 59 59.3
vmacro17239 Vaccinium macrocarpon HOM05D040504 ORTHO05D426804 2.2e-09 66.6 146 32.9
QL07p009230 Quercus lobata HOM05D004389 ORTHO05D005457 8.3e-09 64.7 85 45.9
HPP92_010328 Vanilla planifolia HOM05D004389 ORTHO05D022937 9.1e-08 61.2 44 61.4
Medtr6g452950 Medicago truncatula HOM05D029366 ORTHO05D022937 1.2e-07 60.8 53 58.5
CDE04G0800 Ceratophyllum demersum HOM05D000328 ORTHO05D000191 1.0e-06 57.8 37 73.0


User provided reference genes

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