Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 1.1e-111 406.8 217 100.0
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 1.9e-100 369.4 217 91.7
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 4.7e-99 364.8 217 90.8
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 3.2e-87 325.5 221 79.6
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 4.6e-86 321.6 221 79.6
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 2.3e-85 319.3 221 78.3
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 8.3e-80 300.8 224 75.4
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 6.0e-70 268.1 220 68.2
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 2.3e-61 239.6 218 64.2
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 4.4e-57 225.3 203 65.5
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 8.7e-53 211.1 219 57.5
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 1.1e-50 204.1 167 63.5
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 2.6e-49 199.5 219 53.0
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 1.9e-47 193.4 178 56.2
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 5.4e-47 191.8 155 63.9
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 6.0e-46 188.3 160 61.9
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 1.3e-45 187.2 223 48.4
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 1.8e-45 186.8 159 62.3
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 2.3e-45 186.4 160 61.9
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 3.0e-45 186.0 164 62.2
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 6.7e-45 184.9 167 60.5
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 1.5e-44 183.7 165 58.8
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 2.5e-44 183.0 159 60.4
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 3.3e-44 182.6 221 52.5
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 3.3e-44 182.6 156 61.5
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 3.3e-44 182.6 164 59.1
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 4.3e-44 182.2 160 59.4
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 4.3e-44 182.2 168 60.7
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 9.6e-44 181.0 179 51.4
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 1.1e-42 177.6 156 59.0
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 1.1e-42 177.6 184 55.4
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 1.4e-42 177.2 148 63.5
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 1.8e-42 176.8 162 59.3
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 2.4e-42 176.4 171 59.1
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 4.0e-42 175.6 157 56.7
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 5.3e-42 175.3 221 48.4
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 1.5e-41 173.7 168 53.0
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 5.8e-41 171.8 166 54.2
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 7.6e-41 171.4 242 42.6
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 2.2e-40 169.9 220 47.7
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 2.9e-40 169.5 159 58.5
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 3.8e-40 169.1 159 56.0
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 6.4e-40 168.3 235 45.5
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 1.4e-39 167.2 169 51.5
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 2.4e-39 166.4 161 52.8
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 1.3e-37 160.6 152 52.6
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 1.8e-37 160.2 152 53.3
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 3.3e-36 156.0 159 52.8
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 4.3e-36 155.6 158 54.4
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 5.6e-36 155.2 155 53.5
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 2.8e-35 152.9 176 50.0
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 3.7e-35 152.5 165 52.1
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 1.1e-34 151.0 163 47.9
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 1.2e-33 147.5 147 53.7
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 5.8e-33 145.2 128 56.2
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 1.3e-32 144.1 165 48.5
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 1.4e-31 140.6 192 45.3
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 1.9e-31 140.2 165 46.1
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.5e-31 139.8 168 51.2
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 3.2e-31 139.4 198 41.4
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 9.3e-31 137.9 152 47.4
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 1.2e-30 137.5 196 42.9
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 4.6e-30 135.6 157 45.9
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 6.0e-30 135.2 155 45.2
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 5.1e-29 132.1 153 47.7
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 6.7e-29 131.7 134 55.2
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 5.7e-28 128.6 149 49.7
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 1.8e-26 123.6 115 50.4
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 5.3e-26 122.1 115 58.3
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 5.9e-25 118.6 85 67.1
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 7.6e-25 118.2 185 41.6
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 1.7e-24 117.1 136 44.9
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 5.0e-24 115.5 126 42.9
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 6.5e-24 115.2 139 41.7
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 1.1e-23 114.4 193 35.2
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 1.9e-23 113.6 158 39.9
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 2.5e-23 113.2 193 35.2
Ah.13g073570 Amaranthus hybridus HOM05D003796 ORTHO05D004486 3.2e-23 112.8 163 42.9
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 5.5e-23 112.1 148 41.2
Nitab4.5_0000856g0240 Nicotiana tabacum HOM05D003796 ORTHO05D004486 7.2e-23 111.7 104 61.5
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 1.6e-22 110.5 159 39.0
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 2.1e-22 110.2 152 40.1
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 2.1e-22 110.2 152 39.5
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 3.6e-22 109.4 154 36.4
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 6.1e-22 108.6 151 36.4
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 7.9e-22 108.2 192 33.3
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 7.9e-22 108.2 195 35.9
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 1.0e-21 107.8 140 38.6
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 1.0e-21 107.8 195 35.9
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 1.0e-21 107.8 197 34.5
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 1.3e-21 107.5 120 48.3
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 1.3e-21 107.5 144 38.9
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 1.3e-21 107.5 155 34.8
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 1.8e-21 107.1 120 48.3
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 1.8e-21 107.1 126 42.1
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 1.8e-21 107.1 132 40.9
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 2.3e-21 106.7 164 38.4
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 3.0e-21 106.3 127 40.2
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 3.0e-21 106.3 119 43.7
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 3.0e-21 106.3 122 41.0
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 3.9e-21 105.9 123 40.7
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 3.9e-21 105.9 124 40.3
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 3.9e-21 105.9 225 33.8
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 6.7e-21 105.1 176 35.2
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 8.7e-21 104.8 147 38.1
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 8.7e-21 104.8 126 40.5
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 8.7e-21 104.8 123 41.5
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 8.7e-21 104.8 123 41.5
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 8.7e-21 104.8 149 36.9
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 1.1e-20 104.4 148 39.2
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 1.1e-20 104.4 191 34.0
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 1.1e-20 104.4 125 39.2
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 1.9e-20 103.6 209 32.1
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 2.5e-20 103.2 121 40.5
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 2.5e-20 103.2 126 42.9
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 2.5e-20 103.2 120 40.0
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 3.3e-20 102.8 152 38.8
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 3.3e-20 102.8 153 35.3
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 7.4e-20 101.7 165 36.4
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 9.7e-20 101.3 146 36.3
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 1.3e-19 100.9 134 43.3
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 1.3e-19 100.9 121 38.8
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 1.6e-19 100.5 126 39.7
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 2.2e-19 100.1 177 32.2
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 2.2e-19 100.1 144 38.9
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 2.2e-19 100.1 111 42.3
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 2.2e-19 100.1 149 36.2
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 2.8e-19 99.8 177 32.2
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 2.8e-19 99.8 157 37.6
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 3.7e-19 99.4 165 34.5
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 3.7e-19 99.4 206 32.5
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 3.7e-19 99.4 152 34.9
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 4.8e-19 99.0 119 38.7
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 4.8e-19 99.0 147 38.1
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 4.8e-19 99.0 160 37.5
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 6.3e-19 98.6 142 35.9
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 8.2e-19 98.2 200 32.5
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 1.1e-18 97.8 123 37.4
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 1.1e-18 97.8 130 38.5
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 1.4e-18 97.4 113 41.6
Oeu021569.1 Olea europaea HOM05D003796 ORTHO05D004486 4.1e-18 95.9 143 43.4
QL10p054574 Quercus lobata HOM05D003796 ORTHO05D004486 2.0e-17 93.6 72 65.3
QL93p1902_0789 Quercus lobata HOM05D003796 ORTHO05D004486 2.0e-17 93.6 72 65.3
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 2.0e-17 93.6 106 44.3
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 5.9e-17 92.0 125 38.4
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 1.7e-16 90.5 143 35.0
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.8e-16 89.4 178 31.5
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 5.0e-16 89.0 152 35.5
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 6.5e-16 88.6 123 37.4
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 1.1e-15 87.8 86 51.2
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 7.2e-15 85.1 126 36.5
Sabra13G0104400 Salix brachista HOM05D003796 ORTHO05D004486 7.2e-15 85.1 110 46.4
ClCG06G001080 Citrullus lanatus HOM05D003796 ORTHO05D004486 2.1e-14 83.6 130 40.0
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.4e-13 80.9 257 26.1
FAN22G2021 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.4e-13 80.9 83 53.0
QL93p1902_0792 Quercus lobata HOM05D003796 ORTHO05D004486 1.4e-13 80.9 80 51.2
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 3.0e-13 79.7 149 33.6
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 3.0e-13 79.7 170 30.6
QL10p054570 Quercus lobata HOM05D003796 ORTHO05D004486 1.1e-12 77.8 80 50.0
FAN07G1083 Fragaria x ananassa HOM05D003796 ORTHO05D004486 4.4e-12 75.9 83 51.8
FAN12G2909 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.2e-11 73.6 77 54.5
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 3.7e-11 72.8 214 25.7
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 8.2e-11 71.6 218 28.0
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 1.3e-08 64.3 237 24.9
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 2.9e-08 63.2 73 39.7
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 6.5e-08 62.0 74 37.8


User provided reference genes

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