Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402006827 Solanum tuberosum HOM05D000730 ORTHO05D026154 3.0e-31 137.9 69 100.0
Sopen01g035170 Solanum pennellii HOM05D000730 ORTHO05D026154 4.9e-26 120.6 67 89.6
Solyc02g071830.3 Solanum lycopersicum HOM05D000730 ORTHO05D026154 3.3e-22 107.8 64 87.5
Solyc01g088330.1 Solanum lycopersicum HOM05D000730 ORTHO05D026154 6.4e-18 93.6 49 93.9
Peaxi162Scf00082g00018 Petunia axillaris HOM05D000730 ORTHO05D000578 1.9e-17 92.0 54 90.7
Solyc01g096540.4 Solanum lycopersicum HOM05D000730 ORTHO05D000578 1.9e-17 92.0 54 90.7
Sopen01g040270 Solanum pennellii HOM05D000730 ORTHO05D000578 1.9e-17 92.0 54 90.7
Sopen02g020820 Solanum pennellii HOM05D000730 ORTHO05D026154 4.2e-17 90.9 56 83.9
CAN.G134.13 Capsicum annuum HOM05D000730 ORTHO05D000578 7.1e-17 90.1 54 87.0
TWI60G0879 Tripterygium wilfordii HOM05D000730 ORTHO05D000578 1.1e-14 82.8 54 77.8
COL.COLO4_20721 Corchorus olitorius HOM05D000730 ORTHO05D000578 1.3e-13 79.3 54 74.1
CiPaw.13G015400 Carya illinoinensis HOM05D000730 ORTHO05D000578 3.6e-13 77.8 54 74.1
Haze_03002 Corylus avellana HOM05D000730 ORTHO05D000578 6.2e-13 77.0 54 74.1
Thecc.10G145500 Theobroma cacao HOM05D000730 ORTHO05D000578 8.1e-13 76.6 54 72.2
Ciclev10003518m.g Citrus clementina HOM05D000730 ORTHO05D000578 1.1e-12 76.3 54 72.2
Gohir.D05G284200 Gossypium hirsutum HOM05D000730 ORTHO05D000578 1.4e-12 75.9 54 70.4
Gorai.009G298800 Gossypium raimondii HOM05D000730 ORTHO05D000578 1.4e-12 75.9 54 70.4
Duzib128G1742 Durio zibethinus HOM05D000730 ORTHO05D000578 1.8e-12 75.5 54 68.5
CSS0025631 Camellia sinensis var. sinensis HOM05D000730 ORTHO05D000578 3.1e-12 74.7 54 70.4
Gohir.A05G283200 Gossypium hirsutum HOM05D000730 ORTHO05D000578 3.1e-12 74.7 54 68.5
Sabra01G0021600 Salix brachista HOM05D000730 ORTHO05D000578 3.1e-12 74.7 57 66.7
Lj9A659G48 Lonicera japonica HOM05D000730 ORTHO05D000578 4.0e-12 74.3 53 67.9
Rhsim07G0068600 Rhododendron simsii HOM05D000730 ORTHO05D000578 4.0e-12 74.3 54 70.4
Atru.chr12.1287 Acer truncatum HOM05D000730 ORTHO05D000578 5.3e-12 73.9 54 68.5
Cc00_g07550 Coffea canephora HOM05D000730 ORTHO05D000578 5.3e-12 73.9 54 72.2
Sc10g0004540 Simmondsia chinensis HOM05D000730 ORTHO05D000578 6.9e-12 73.6 54 72.2
MD02G1278500 Malus domestica HOM05D000730 ORTHO05D000578 9.0e-12 73.2 54 68.5
MD07G1046600 Malus domestica HOM05D000730 ORTHO05D000578 9.0e-12 73.2 54 68.5
Eucgr.J00067 Eucalyptus grandis HOM05D000730 ORTHO05D000578 1.2e-11 72.8 54 68.5
FvH4_7g03630 Fragaria vesca HOM05D000730 ORTHO05D000578 1.2e-11 72.8 54 68.5
FAN03G3014 Fragaria x ananassa HOM05D000730 ORTHO05D000578 1.2e-11 72.8 54 68.5
FAN06G3967 Fragaria x ananassa HOM05D000730 ORTHO05D000578 1.2e-11 72.8 54 68.5
RcHm_v2.0_Chr1g0326411 Rosa chinensis HOM05D000730 ORTHO05D000578 1.2e-11 72.8 54 68.5
Prupe.2G042100 Prunus persica HOM05D000730 ORTHO05D000578 1.5e-11 72.4 54 68.5
Phvul.011G201400 Phaseolus vulgaris HOM05D000730 ORTHO05D000578 2.6e-11 71.6 54 72.2
Glyma.13G192900 Glycine max HOM05D000730 ORTHO05D000578 3.4e-11 71.2 54 70.4
Glyma.15G230600 Glycine max HOM05D000730 ORTHO05D000578 3.4e-11 71.2 54 70.4
Lj3g0012169 Lotus japonicus HOM05D000730 ORTHO05D000578 3.4e-11 71.2 54 70.4
Actinidia06224 Actinidia chinensis HOM05D000730 ORTHO05D000578 4.5e-11 70.9 54 66.7
Potri.001G030100 Populus trichocarpa HOM05D000730 ORTHO05D000578 4.5e-11 70.9 54 66.7
arahy.Tifrunner.gnm1.ann1.8I68MQ Arachis hypogaea HOM05D000730 ORTHO05D000578 5.8e-11 70.5 54 70.4
arahy.Tifrunner.gnm1.ann1.H567TY Arachis hypogaea HOM05D000730 ORTHO05D000578 5.8e-11 70.5 54 70.4
VMungo1127G0979 Vigna mungo HOM05D000730 ORTHO05D000578 5.8e-11 70.5 54 70.4
GSVIVG01036645001 Vitis vinifera HOM05D000730 ORTHO05D000578 7.6e-11 70.1 54 66.7
Duzib114G0880 Durio zibethinus HOM05D000730 ORTHO05D000578 9.9e-11 69.7 52 65.4
FAN10G2667 Fragaria x ananassa HOM05D000730 ORTHO05D000578 9.9e-11 69.7 54 64.8
vmacro07437 Vaccinium macrocarpon HOM05D000730 ORTHO05D000578 1.7e-10 68.9 54 64.8
Aqoxy2G00416 Aquilegia oxysepala HOM05D000730 ORTHO05D000578 2.2e-10 68.6 54 64.8
CANSAT56G2780 Cannabis sativa HOM05D000730 ORTHO05D000578 2.2e-10 68.6 54 64.8
SalBow5G1057 Salvia bowleyana HOM05D000730 ORTHO05D000578 2.2e-10 68.6 54 68.5
Ah.10g030070 Amaranthus hybridus HOM05D000730 ORTHO05D000578 4.9e-10 67.4 55 65.5
Ca_23976_v3 Cicer arietinum L. HOM05D000730 ORTHO05D000578 6.4e-10 67.0 54 64.8
Nn7g36786 Nelumbo nucifera HOM05D000730 ORTHO05D000578 6.4e-10 67.0 54 66.7
Nitab4.5_0002838g0080 Nicotiana tabacum HOM05D000730 ORTHO05D000578 1.1e-09 66.2 41 87.8
Nitab4.5_0005420g0020 Nicotiana tabacum HOM05D000730 ORTHO05D000578 1.1e-09 66.2 41 87.8
Lalb_Chr19g0132961 Lupinus albus HOM05D000730 ORTHO05D000578 1.4e-09 65.9 53 66.0
Sed0013589 Sechium edule HOM05D000730 ORTHO05D000578 1.4e-09 65.9 54 63.0
TPR.G8523 Trifolium pratense HOM05D000730 ORTHO05D000578 1.4e-09 65.9 55 67.3
PGR044G0565 Punica granatum HOM05D000730 ORTHO05D000578 1.9e-09 65.5 54 66.7
SGA_v2.0_scaffold124G33604 Striga asiatica HOM05D000730 ORTHO05D000578 2.4e-09 65.1 54 68.5
Manes.04G156900 Manihot esculenta HOM05D000730 ORTHO05D000578 4.2e-09 64.3 54 66.7
PSO339G1614 Papaver somniferum HOM05D000730 ORTHO05D000578 4.2e-09 64.3 54 64.8
PSO384G0089 Papaver somniferum HOM05D000730 ORTHO05D000578 4.2e-09 64.3 54 64.8
Medtr8g040190 Medicago truncatula HOM05D000730 ORTHO05D000578 9.3e-09 63.2 55 61.8
Cpa.g.sc169.47 Carica papaya HOM05D000730 ORTHO05D000578 1.6e-08 62.4 54 63.0
MELO3C012490.2 Cucumis melo HOM05D000730 ORTHO05D000578 2.1e-08 62.0 54 59.3
CsaV3_5G036910 Cucumis sativus L. HOM05D000730 ORTHO05D000578 2.1e-08 62.0 54 59.3
ATR1096G139 Amborella trichopoda HOM05D000730 ORTHO05D000578 2.7e-08 61.6 54 57.4
ClCG05G026970 Citrullus lanatus HOM05D000730 ORTHO05D000578 2.7e-08 61.6 54 59.3
Psat4g145160 Pisum sativum HOM05D000730 ORTHO05D000578 2.7e-08 61.6 55 61.8
Lsat_1_v5_gn_7_31081 Lactuca sativa HOM05D000730 ORTHO05D000578 3.5e-08 61.2 54 61.1
Zm00001eb285140 Zea mays HOM05D000730 ORTHO05D000578 7.9e-08 60.1 54 59.3
Lalb_Chr01g0007391 Lupinus albus HOM05D000730 ORTHO05D000578 1.0e-07 59.7 55 60.0
Dinv44710 Davidia involucrata HOM05D000730 ORTHO05D000578 1.3e-07 59.3 39 79.5
Hund15746 Selenicereus undatus HOM05D000730 ORTHO05D000578 1.3e-07 59.3 53 56.6
DCAR_006604 Daucus carota HOM05D000730 ORTHO05D000578 2.3e-07 58.5 54 63.0
AT5G06970 Arabidopsis thaliana HOM05D000730 ORTHO05D000578 5.1e-07 57.4 55 69.1
Sp6g35900 Schrenkiella parvula HOM05D000730 ORTHO05D000578 5.1e-07 57.4 55 69.1
AL6G17130 Arabidopsis lyrata HOM05D000730 ORTHO05D000578 1.1e-06 56.2 55 67.3
CARHR206170 Cardamine hirsuta HOM05D000730 ORTHO05D000578 1.1e-06 56.2 55 67.3
Carub.0006s0590 Capsella rubella HOM05D000730 ORTHO05D000578 1.5e-06 55.8 55 65.5
Thhalv10012512m.g Eutrema salsugineum HOM05D000730 ORTHO05D000578 1.5e-06 55.8 55 65.5
BcaNung04208 Brassica carinata HOM05D000730 ORTHO05D000578 3.3e-06 54.7 55 67.3
A10p28770 Brassica napus HOM05D000730 ORTHO05D000578 3.3e-06 54.7 55 67.3
C09p69110 Brassica napus HOM05D000730 ORTHO05D000578 3.3e-06 54.7 55 67.3
BolC9t59655H Brassica oleracea HOM05D000730 ORTHO05D000578 3.3e-06 54.7 55 67.3
BraA10t44924Z Brassica rapa HOM05D000730 ORTHO05D000578 3.3e-06 54.7 55 67.3
Pp3c7_24310 Physcomitrium patens HOM05D000730 ORTHO05D000578 4.3e-06 54.3 62 45.2
EL10Ac2g02767 Beta vulgaris HOM05D000730 ORTHO05D000578 5.6e-06 53.9 57 52.6
BcaC06g32528 Brassica carinata HOM05D000730 ORTHO05D000578 7.4e-06 53.5 55 65.5
AUR62031742 Chenopodium quinoa HOM05D000730 ORTHO05D000578 9.6e-06 53.1 55 54.5


User provided reference genes

Program Settings