Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 1.2e-222 776.2 383 100.0
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 8.6e-213 743.4 381 96.3
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 1.6e-195 686.0 384 89.3
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 3.7e-192 674.9 379 89.2
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.5e-180 636.3 377 84.4
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 7.3e-180 634.0 344 89.0
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 1.6e-150 536.6 386 71.2
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 3.5e-150 535.4 387 69.0
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 6.0e-150 534.6 378 71.7
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 1.0e-149 533.9 388 70.9
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 6.7e-149 531.2 388 68.8
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 2.5e-148 529.3 368 72.6
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 6.2e-147 524.6 383 68.7
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 2.4e-146 522.7 381 68.8
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 2.4e-146 522.7 376 69.7
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 5.3e-146 521.5 375 69.3
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 2.6e-145 519.2 347 73.5
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 7.6e-145 517.7 386 68.7
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 6.5e-144 514.6 385 67.5
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 4.2e-143 511.9 388 69.1
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 1.2e-142 510.4 386 65.3
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 3.5e-142 508.8 378 66.7
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 1.0e-141 507.3 357 68.9
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.8e-141 506.5 384 68.0
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 3.9e-141 505.4 387 66.4
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 1.1e-140 503.8 448 60.5
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 1.5e-140 503.4 357 67.2
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 2.5e-140 502.7 377 66.6
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 3.7e-139 498.8 390 65.4
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 3.7e-139 498.8 377 65.5
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 4.8e-139 498.4 371 65.5
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 6.3e-139 498.0 390 65.4
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 6.3e-139 498.0 372 66.4
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 8.2e-139 497.7 350 66.9
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 1.1e-138 497.3 383 65.3
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 1.1e-138 497.3 354 69.5
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 1.8e-138 496.5 389 65.8
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 5.3e-138 495.0 379 64.1
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 5.3e-138 495.0 371 66.3
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 9.0e-138 494.2 368 66.6
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 1.2e-137 493.8 386 64.5
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 1.5e-137 493.4 374 64.4
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 2.0e-137 493.0 361 67.6
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 2.6e-137 492.7 353 67.4
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 2.6e-137 492.7 372 65.1
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 2.6e-137 492.7 379 64.6
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 5.9e-137 491.5 373 66.2
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 7.7e-137 491.1 375 65.1
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 1.0e-136 490.7 351 67.8
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 1.0e-136 490.7 370 64.3
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 1.3e-136 490.3 379 64.6
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 1.3e-136 490.3 379 64.4
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 1.3e-136 490.3 359 66.6
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 2.2e-136 489.6 367 66.8
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 1.9e-135 486.5 356 66.9
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 3.2e-135 485.7 369 65.9
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 7.2e-135 484.6 339 69.0
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 9.4e-135 484.2 376 63.6
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 2.7e-134 482.6 345 66.1
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 3.6e-134 482.3 346 68.5
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 4.6e-134 481.9 344 68.6
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 6.1e-134 481.5 387 61.5
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 6.1e-134 481.5 355 67.3
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 7.9e-134 481.1 379 62.5
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 7.9e-134 481.1 374 64.4
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 3.0e-133 479.2 374 64.2
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 3.9e-133 478.8 372 64.0
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 8.8e-133 477.6 343 67.3
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 8.8e-133 477.6 381 64.6
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 2.0e-132 476.5 380 61.8
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.5e-132 476.1 401 61.8
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 4.3e-132 475.3 375 62.9
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 5.7e-132 474.9 339 66.4
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 5.7e-132 474.9 374 62.0
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 5.7e-132 474.9 379 62.0
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 9.7e-132 474.2 375 62.9
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 9.7e-132 474.2 375 62.9
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 9.7e-132 474.2 347 66.3
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 1.7e-131 473.4 363 65.3
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 2.2e-131 473.0 347 66.6
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 3.1e-130 469.2 371 63.3
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 5.3e-130 468.4 380 62.6
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 1.5e-129 466.8 403 60.5
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 2.6e-129 466.1 442 57.7
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 7.7e-129 464.5 384 64.6
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 1.0e-128 464.2 358 62.8
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 1.0e-128 464.2 370 61.6
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 3.8e-128 462.2 358 62.8
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 6.5e-128 461.5 390 63.6
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 8.5e-128 461.1 352 63.4
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.4e-127 460.3 383 64.2
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 4.2e-127 458.8 342 65.5
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 7.2e-127 458.0 372 61.3
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 1.8e-125 453.4 428 56.1
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 3.0e-125 452.6 354 62.4
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 4.8e-123 445.3 399 59.1
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 3.1e-122 442.6 384 57.8
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 5.3e-122 441.8 353 61.5
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 1.6e-121 440.3 351 63.5
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 3.5e-121 439.1 343 64.1
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 5.5e-119 431.8 411 57.7
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 2.1e-118 429.9 370 59.7
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 8.0e-118 427.9 346 61.0
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 2.3e-117 426.4 310 68.7
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 1.1e-116 424.1 306 66.3
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 1.1e-116 424.1 379 57.3
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 4.4e-116 422.2 386 57.0
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 8.2e-115 417.9 208 96.6
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.8e-114 416.8 410 54.4
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 2.4e-114 416.4 372 58.3
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 3.1e-114 416.0 375 58.1
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 1.2e-113 414.1 368 57.9
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 7.7e-113 411.4 355 60.8
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 3.8e-112 409.1 357 58.0
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 5.0e-112 408.7 413 53.0
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 5.0e-112 408.7 363 60.9
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 2.5e-111 406.4 346 59.5
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 5.5e-111 405.2 315 62.9
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 9.4e-111 404.4 366 58.7
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 1.8e-109 400.2 543 43.3
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 5.9e-105 385.2 527 44.0
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.6e-102 377.1 388 54.6
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 6.8e-101 371.7 351 57.0
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 4.1e-98 362.5 270 68.1
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 4.1e-98 362.5 351 56.1
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 2.7e-97 359.8 266 66.9
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 2.3e-96 356.7 240 70.8
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 5.0e-96 355.5 274 62.4
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 2.0e-92 343.6 239 69.5
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 1.8e-90 337.0 375 49.1
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 2.4e-90 336.7 365 49.3
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 3.5e-89 332.8 307 58.3
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 5.0e-88 328.9 268 63.1
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 1.9e-87 327.0 417 44.6
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 2.5e-87 326.6 347 52.7
Carub.0005s1159 Capsella rubella HOM05D004534 ORTHO05D005413 4.1e-82 309.3 237 64.1
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 1.1e-79 301.2 353 45.6
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.5e-71 274.2 286 53.5
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 3.3e-71 273.1 365 45.5
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 2.2e-67 260.4 528 34.8
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 2.1e-65 253.8 197 65.0
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.8e-62 243.4 349 43.3
CBR_g24062 Chara braunii HOM05D004534 ORTHO05D005413 1.6e-54 217.6 305 39.3
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 1.1e-53 214.9 263 46.8
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 2.4e-50 203.8 189 50.8
Cfa024137 Carpinus fangiana HOM05D004534 ORTHO05D005413 2.1e-41 174.1 399 31.8
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 1.6e-38 164.5 131 61.1
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.2e-36 158.3 173 50.9
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 2.0e-36 157.5 314 32.8
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 1.9e-34 151.0 327 30.3
AUR62035991 Chenopodium quinoa HOM05D004534 ORTHO05D005413 9.0e-29 132.1 116 56.0
VMungo0464G2039 Vigna mungo HOM05D004534 ORTHO05D005413 2.9e-27 127.1 94 66.0
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 1.8e-24 117.9 63 87.3
Glyma.15G044000 Glycine max HOM05D004534 ORTHO05D005413 1.3e-22 111.7 81 66.7
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 7.9e-17 92.4 56 69.6
RcHm_v2.0_Chr5g0046071 Rosa chinensis HOM05D004534 ORTHO05D005413 5.1e-16 89.7 48 87.5
CAN.G1235.22 Capsicum annuum HOM05D000680 ORTHO05D000738 1.0e-11 75.5 57 68.4
Actinidia38238 Actinidia chinensis HOM05D004534 ORTHO05D005413 3.2e-10 70.5 135 36.3
Nitab4.5_0000830g0070 Nicotiana tabacum HOM05D004534 ORTHO05D005413 5.5e-10 69.7 43 74.4
AagrBONN_evm.TU.Sc2ySwM_117.2640 Anthoceros agrestis HOM05D012537 ORTHO05D009535 4.4e-07 60.1 39 64.1


User provided reference genes

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