Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402005714 Solanum tuberosum HOM05D006108 ORTHO05D007605 1.3e-79 299.7 150 100.0
Sopen03g038460 Solanum pennellii HOM05D006108 ORTHO05D007605 1.8e-57 226.1 116 96.6
Nitab4.5_0001599g0060 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.1e-49 200.3 114 85.1
Nitab4.5_0004412g0100 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.7e-39 166.4 90 88.9
CAN.G438.131 Capsicum annuum HOM05D006108 ORTHO05D007605 9.0e-33 144.1 92 82.6
Peaxi162Scf00015g00844 Petunia axillaris HOM05D006108 ORTHO05D007605 1.5e-32 143.3 97 78.4
Gohir.A09G177600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.3e-28 130.2 106 64.2
Gorai.006G195000 Gossypium raimondii HOM05D006108 ORTHO05D007605 1.8e-28 129.8 106 64.2
Gohir.D09G173100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 3.0e-28 129.0 98 68.4
TPR.G35239 Trifolium pratense HOM05D006108 ORTHO05D007605 3.9e-28 128.6 99 64.6
Phvul.004G158700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 4.3e-27 125.2 104 60.6
Glyma.07G090500 Glycine max HOM05D006108 ORTHO05D007605 9.6e-27 124.0 98 62.2
Glyma.09G185400 Glycine max HOM05D006108 ORTHO05D007605 1.3e-26 123.6 98 60.2
Lj2g0017619 Lotus japonicus HOM05D006108 ORTHO05D007605 1.3e-26 123.6 80 75.0
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 1.6e-26 123.2 115 54.8
Psat6g222560 Pisum sativum HOM05D006108 ORTHO05D007605 6.2e-26 121.3 115 55.7
Duzib084G1067 Durio zibethinus HOM05D006108 ORTHO05D007605 1.4e-25 120.2 105 61.0
Atru.chr9.818 Acer truncatum HOM05D006108 ORTHO05D007605 1.8e-25 119.8 77 76.6
Gorai.006G061500 Gossypium raimondii HOM05D006108 ORTHO05D007605 1.8e-25 119.8 105 60.0
Thecc.03G033400 Theobroma cacao HOM05D006108 ORTHO05D007605 1.8e-25 119.8 105 61.9
Gohir.A09G047400 Gossypium hirsutum HOM05D006108 ORTHO05D007605 4.0e-25 118.6 96 62.5
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 4.0e-25 118.6 87 70.1
Gohir.D09G048600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 5.3e-25 118.2 94 63.8
Dinv09807 Davidia involucrata HOM05D006108 ORTHO05D007605 9.0e-25 117.5 77 75.3
Ciclev10022919m.g Citrus clementina HOM05D006108 ORTHO05D007605 1.2e-24 117.1 111 58.6
FvH4_5g12320 Fragaria vesca HOM05D006108 ORTHO05D007605 3.4e-24 115.5 113 55.8
QL10p025064 Quercus lobata HOM05D006108 ORTHO05D007605 7.6e-24 114.4 94 64.9
FAN18G0723 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.0e-23 114.0 113 54.9
FAN18G1336 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.0e-23 114.0 113 54.9
Prupe.5G220300 Prunus persica HOM05D006108 ORTHO05D007605 1.7e-23 113.2 99 63.6
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 2.2e-23 112.8 123 49.6
Cfa019791 Carpinus fangiana HOM05D006108 ORTHO05D007605 3.8e-23 112.1 96 59.4
Manes.05G140027 Manihot esculenta HOM05D006108 ORTHO05D007605 3.8e-23 112.1 101 61.4
MD06G1214900 Malus domestica HOM05D006108 ORTHO05D007605 8.4e-23 110.9 115 53.9
Actinidia35084 Actinidia chinensis HOM05D006108 ORTHO05D007605 1.1e-22 110.5 111 55.9
FAN13G1808 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.1e-22 110.5 73 74.0
RcHm_v2.0_Chr7g0185241 Rosa chinensis HOM05D006108 ORTHO05D007605 1.9e-22 109.8 102 57.8
Eucgr.B00718 Eucalyptus grandis HOM05D006108 ORTHO05D007605 2.5e-22 109.4 78 66.7
FAN08G0393 Fragaria x ananassa HOM05D006108 ORTHO05D007605 3.2e-22 109.0 102 55.9
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 7.1e-22 107.8 83 62.7
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 7.1e-22 107.8 105 52.4
MD13G1043700 Malus domestica HOM05D006108 ORTHO05D007605 9.3e-22 107.5 92 53.3
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 2.1e-21 106.3 89 58.4
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.1e-21 106.3 95 53.7
Rhsim12G0143800 Rhododendron simsii HOM05D006108 ORTHO05D007605 2.1e-21 106.3 74 68.9
Nn4g23806 Nelumbo nucifera HOM05D006108 ORTHO05D007605 2.7e-21 105.9 85 60.0
arahy.Tifrunner.gnm1.ann1.1V8BDZ Arachis hypogaea HOM05D006108 ORTHO05D007605 3.5e-21 105.5 89 61.8
arahy.Tifrunner.gnm1.ann1.L19XPP Arachis hypogaea HOM05D006108 ORTHO05D007605 3.5e-21 105.5 89 61.8
MD14G1225800 Malus domestica HOM05D006108 ORTHO05D007605 3.5e-21 105.5 108 56.5
Nn3g17803 Nelumbo nucifera HOM05D006108 ORTHO05D007605 7.9e-21 104.4 91 58.2
PSO017G5628 Papaver somniferum HOM05D006108 ORTHO05D007605 7.9e-21 104.4 80 58.8
Eucgr.B03028 Eucalyptus grandis HOM05D006108 ORTHO05D007605 1.0e-20 104.0 84 57.1
CsaV3_1G006560 Cucumis sativus L. HOM05D006108 ORTHO05D007605 1.3e-20 103.6 98 58.2
TWI79G0681 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 1.3e-20 103.6 76 60.5
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.3e-20 102.8 88 54.5
CiPaw.15G129300 Carya illinoinensis HOM05D006108 ORTHO05D007605 3.0e-20 102.4 69 72.5
Prupe.1G308800 Prunus persica HOM05D006108 ORTHO05D007605 6.7e-20 101.3 91 54.9
CSS0049683 Camellia sinensis var. sinensis HOM05D006108 ORTHO05D007605 1.1e-19 100.5 75 62.7
Manes.14G100500 Manihot esculenta HOM05D006108 ORTHO05D007605 1.5e-19 100.1 88 52.3
Cc11_g10300 Coffea canephora HOM05D006108 ORTHO05D007605 1.9e-19 99.8 84 57.1
Gorai.008G184200 Gossypium raimondii HOM05D006108 ORTHO05D007605 1.9e-19 99.8 89 57.3
HanXRQChr02g0058721 Helianthus annuus HOM05D006108 ORTHO05D007605 2.5e-19 99.4 82 57.3
Sed0021850 Sechium edule HOM05D006108 ORTHO05D007605 2.5e-19 99.4 104 53.8
Sc14g0007540 Simmondsia chinensis HOM05D006108 ORTHO05D007605 2.5e-19 99.4 86 55.8
Medtr5g055190 Medicago truncatula HOM05D006108 ORTHO05D007605 3.3e-19 99.0 83 54.2
DCAR_026728 Daucus carota HOM05D006108 ORTHO05D007605 4.3e-19 98.6 89 56.2
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 4.3e-19 98.6 76 59.2
Lsat_1_v5_gn_8_39200 Lactuca sativa HOM05D006108 ORTHO05D007605 4.3e-19 98.6 82 56.1
Lj2g0013090 Lotus japonicus HOM05D006108 ORTHO05D007605 5.7e-19 98.2 76 59.2
Potri.008G119200 Populus trichocarpa HOM05D006108 ORTHO05D007605 5.7e-19 98.2 80 56.2
BcaB07g30252 Brassica carinata HOM05D006108 ORTHO05D007605 7.4e-19 97.8 75 58.7
CDE05G0497 Ceratophyllum demersum HOM05D006108 ORTHO05D007605 9.7e-19 97.4 82 61.0
TPR.G38355 Trifolium pratense HOM05D006108 ORTHO05D007605 9.7e-19 97.4 87 52.9
BcaC03g17291 Brassica carinata HOM05D006108 ORTHO05D007605 1.3e-18 97.1 89 51.7
BolC2t11319H Brassica oleracea HOM05D006108 ORTHO05D007605 1.3e-18 97.1 89 51.7
A02p34100 Brassica napus HOM05D006108 ORTHO05D007605 2.2e-18 96.3 83 54.2
Sabra08G0090500 Salix brachista HOM05D006108 ORTHO05D007605 2.2e-18 96.3 80 55.0
Sp2g15090 Schrenkiella parvula HOM05D006108 ORTHO05D007605 2.8e-18 95.9 104 45.2
Ciclev10033455m.g Citrus clementina HOM05D006108 ORTHO05D007605 3.7e-18 95.5 79 59.5
TWI31G1391 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 3.7e-18 95.5 75 58.7
Lalb_Chr10g0099931 Lupinus albus HOM05D006108 ORTHO05D007605 4.8e-18 95.1 110 46.4
BcaC06g33947 Brassica carinata HOM05D006108 ORTHO05D007605 8.2e-18 94.4 76 52.6
Manes.06G070100 Manihot esculenta HOM05D006108 ORTHO05D007605 8.2e-18 94.4 73 54.8
A06p42440 Brassica napus HOM05D006108 ORTHO05D007605 1.1e-17 94.0 83 49.4
C07p34870 Brassica napus HOM05D006108 ORTHO05D007605 1.1e-17 94.0 76 52.6
BraA06t27159Z Brassica rapa HOM05D006108 ORTHO05D007605 1.1e-17 94.0 83 49.4
MD16G1044500 Malus domestica HOM05D006108 ORTHO05D007605 1.4e-17 93.6 90 48.9
FAN12G0874 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.8e-17 93.2 95 49.5
Os09g0408550 Oryza sativa ssp. japonica HOM05D006108 ORTHO05D007605 1.8e-17 93.2 68 63.2
Psat2g097920 Pisum sativum HOM05D006108 ORTHO05D007605 1.8e-17 93.2 77 58.4
PGR102G2516 Punica granatum HOM05D006108 ORTHO05D007605 1.8e-17 93.2 86 51.2
Zm00001eb099300 Zea mays HOM05D006108 ORTHO05D007605 1.8e-17 93.2 73 58.9
BolC7t44019H Brassica oleracea HOM05D006108 ORTHO05D007605 2.4e-17 92.8 76 52.6
Oeu041896.1 Olea europaea HOM05D006108 ORTHO05D007605 4.1e-17 92.0 70 64.3
Oeu008040.1 Olea europaea HOM05D006108 ORTHO05D007605 5.3e-17 91.7 70 64.3
CiPaw.15G083500 Carya illinoinensis HOM05D006108 ORTHO05D007605 6.9e-17 91.3 71 56.3
THA.LOC104824033 Tarenaya hassleriana HOM05D006108 ORTHO05D007605 9.0e-17 90.9 71 57.7
Glyma.01G082600 Glycine max HOM05D006108 ORTHO05D007605 1.2e-16 90.5 84 52.4
Carub.0005s0368 Capsella rubella HOM05D006108 ORTHO05D007605 1.5e-16 90.1 80 47.5
Migut.L01077 Erythranthe guttata HOM05D006108 ORTHO05D007605 1.5e-16 90.1 88 52.3
Gohir.A12G168100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.5e-16 90.1 84 56.0
AT3G25855 Arabidopsis thaliana HOM05D006108 ORTHO05D007605 2.0e-16 89.7 86 46.5
Gohir.D12G171700 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.6e-16 89.4 85 55.3
BcaC06g31111 Brassica carinata HOM05D006108 ORTHO05D007605 3.4e-16 89.0 79 48.1
CARHR146800 Cardamine hirsuta HOM05D006108 ORTHO05D007605 5.9e-16 88.2 81 49.4
Thhalv10005176m.g Eutrema salsugineum HOM05D006108 ORTHO05D007605 5.9e-16 88.2 69 56.5
Phvul.003G034700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 5.9e-16 88.2 84 51.2
C02p52370 Brassica napus HOM05D006108 ORTHO05D007605 1.0e-15 87.4 77 53.2
BraA02t08427Z Brassica rapa HOM05D006108 ORTHO05D007605 1.0e-15 87.4 77 53.2
Sed0000256 Sechium edule HOM05D006108 ORTHO05D007605 2.9e-15 85.9 85 49.4
QL01p043861 Quercus lobata HOM05D006108 ORTHO05D007605 3.8e-15 85.5 83 49.4
AL5G14490 Arabidopsis lyrata HOM05D006108 ORTHO05D007605 1.4e-14 83.6 83 47.0
HPP92_026959 Vanilla planifolia HOM05D006108 ORTHO05D007605 1.4e-14 83.6 70 57.1
CAN.G388.38 Capsicum annuum HOM05D006108 ORTHO05D007605 2.5e-14 82.8 81 50.6
Nitab4.5_0003285g0040 Nicotiana tabacum HOM05D006108 ORTHO05D007605 4.2e-14 82.0 89 49.4
CsaV3_6G003400 Cucumis sativus L. HOM05D006108 ORTHO05D007605 1.6e-13 80.1 86 45.3
Nitab4.5_0001914g0010 Nicotiana tabacum HOM05D006108 ORTHO05D007605 2.1e-13 79.7 89 48.3
Cpa.g.sc1.185 Carica papaya HOM05D006108 ORTHO05D007605 2.3e-12 76.3 68 52.9
Sopen05g012490 Solanum pennellii HOM05D006108 ORTHO05D007605 1.1e-11 73.9 84 46.4
arahy.Tifrunner.gnm1.ann1.384K0G Arachis hypogaea HOM05D006108 ORTHO05D007605 9.7e-11 70.9 60 58.3
ClCG04G011190 Citrullus lanatus HOM05D006108 ORTHO05D007605 1.7e-10 70.1 91 49.5
ECA233G5877 Erigeron canadensis HOM05D006108 ORTHO05D007605 1.4e-09 67.0 61 52.5
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 2.4e-09 66.2 89 43.8
TWI15G1195 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 2.4e-09 66.2 45 73.3
Hund05757 Selenicereus undatus HOM05D006108 ORTHO05D007605 1.5e-08 63.5 57 56.1
FAN04G0077 Fragaria x ananassa HOM05D006108 ORTHO05D007605 3.4e-08 62.4 55 65.5
Duzib151G0401 Durio zibethinus HOM05D009285 ORTHO05D009865 6.5e-07 58.2 95 35.8
Sed0027931 Sechium edule HOM05D006108 ORTHO05D007605 6.5e-07 58.2 67 46.3
SEGI_37086 Sequoiadendron giganteum HOM05D000262 ORTHO05D000300 8.5e-07 57.8 79 35.4
ClCG08G005220 Citrullus lanatus HOM05D006108 ORTHO05D007605 1.9e-06 56.6 74 41.9
Dinv38338 Davidia involucrata HOM05D000039 ORTHO05D000366 9.4e-06 54.3 89 30.3


User provided reference genes

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