Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 4.9e-205 717.6 370 100.0
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 3.7e-197 691.4 370 96.2
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.1e-196 689.9 370 96.2
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 2.5e-185 652.1 368 90.8
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 5.6e-177 624.4 369 86.7
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 1.4e-175 619.8 368 85.9
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.1e-171 605.9 383 82.5
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 2.2e-149 532.7 368 72.8
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 3.2e-140 502.3 367 67.8
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.2e-140 501.9 367 68.4
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 4.2e-140 501.9 387 69.0
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.6e-139 498.4 364 68.4
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 9.7e-137 490.7 367 66.8
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 4.2e-132 475.3 370 64.3
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 4.6e-131 471.9 366 65.3
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 7.9e-131 471.1 368 64.9
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.0e-130 470.7 368 64.9
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.8e-130 469.9 368 64.7
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 2.3e-130 469.5 370 64.3
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.5e-129 466.8 383 61.9
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 4.1e-127 458.8 365 63.0
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 2.0e-126 456.4 371 62.5
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 5.9e-126 454.9 316 75.6
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.3e-125 453.8 366 63.4
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 2.7e-123 446.0 367 62.1
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 6.1e-123 444.9 368 60.6
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 1.0e-122 444.1 367 62.4
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 8.8e-122 441.0 368 60.3
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 1.1e-121 440.7 366 60.9
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 1.5e-121 440.3 368 59.8
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 5.3e-119 431.8 368 58.4
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 1.2e-118 430.6 370 58.4
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 1.3e-117 427.2 370 59.7
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 1.7e-117 426.8 364 58.2
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 1.7e-117 426.8 364 58.2
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 2.9e-117 426.0 391 57.5
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 2.5e-116 422.9 364 57.1
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 1.0e-114 417.5 368 56.5
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 1.0e-114 417.5 364 58.2
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 2.3e-114 416.4 371 58.0
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 3.9e-114 415.6 369 57.2
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 5.2e-114 415.2 365 57.8
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 1.1e-113 414.1 364 57.7
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 1.1e-113 414.1 368 59.2
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 5.7e-113 411.8 370 57.0
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 2.2e-112 409.8 363 59.2
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 4.8e-112 408.7 368 55.2
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 1.1e-111 407.5 365 55.9
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 4.1e-111 405.6 368 56.0
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 4.1e-111 405.6 368 58.2
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 9.1e-111 404.4 364 58.2
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 1.6e-110 403.7 364 56.9
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 4.5e-110 402.1 331 61.3
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 5.9e-110 401.7 368 55.7
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 7.7e-110 401.4 319 63.6
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 1.0e-109 401.0 368 56.0
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 2.2e-109 399.8 368 54.9
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 2.9e-109 399.4 368 57.9
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 3.8e-109 399.1 366 56.3
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 6.5e-109 398.3 365 55.9
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 6.5e-109 398.3 367 56.1
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 8.5e-109 397.9 371 56.6
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 1.1e-108 397.5 369 55.6
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 1.5e-108 397.1 365 54.8
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 2.5e-108 396.4 365 54.0
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 1.6e-107 393.7 366 54.4
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 3.6e-107 392.5 368 54.1
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 3.6e-107 392.5 368 55.7
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.4e-106 390.6 365 55.1
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 1.8e-106 390.2 365 55.1
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.8e-106 390.2 368 57.9
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 1.8e-106 390.2 372 55.1
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.3e-106 389.8 368 57.3
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 2.3e-106 389.8 368 54.9
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 8.8e-106 387.9 367 54.8
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 1.5e-105 387.1 368 57.1
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 5.7e-105 385.2 369 53.1
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 9.8e-105 384.4 365 54.5
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 1.3e-104 384.0 369 52.6
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 4.8e-104 382.1 364 54.7
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 1.1e-103 380.9 366 53.8
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 2.4e-103 379.8 405 49.1
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 2.7e-102 376.3 363 53.4
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 4.5e-102 375.6 361 56.5
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 7.7e-102 374.8 364 53.3
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 1.7e-101 373.6 366 53.3
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 3.8e-101 372.5 366 53.3
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 3.8e-101 372.5 379 51.5
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 1.9e-100 370.2 370 52.4
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 3.2e-100 369.4 364 52.2
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 5.5e-100 368.6 400 49.0
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 7.2e-100 368.2 366 53.3
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 1.6e-99 367.1 367 52.6
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 2.1e-99 366.7 366 53.3
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 2.1e-99 366.7 363 52.3
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 2.3e-98 363.2 364 52.7
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 5.2e-98 362.1 368 51.9
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 6.8e-98 361.7 366 51.6
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 6.8e-98 361.7 312 58.7
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 8.8e-98 361.3 364 52.2
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 5.7e-97 358.6 366 50.8
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 2.8e-96 356.3 367 50.7
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 2.8e-96 356.3 402 48.5
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 3.7e-96 355.9 353 52.4
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 3.7e-96 355.9 400 48.5
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 8.3e-96 354.8 365 51.0
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 3.1e-95 352.8 376 50.0
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 3.1e-95 352.8 480 44.0
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 4.1e-95 352.4 362 50.8
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 2.7e-94 349.7 480 42.9
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 4.5e-94 349.0 350 52.6
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.0e-93 347.8 317 58.4
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 2.5e-92 343.2 283 61.1
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 3.3e-92 342.8 369 49.6
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 9.5e-92 341.3 355 50.4
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 1.2e-91 340.9 502 40.8
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 1.6e-91 340.5 355 50.1
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 3.6e-91 339.3 281 58.4
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 3.6e-91 339.3 354 52.0
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 6.1e-91 338.6 355 50.1
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 1.4e-90 337.4 313 55.3
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 1.5e-89 334.0 367 49.0
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 4.4e-89 332.4 368 50.0
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 5.7e-89 332.0 366 48.6
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 7.3e-84 315.1 314 52.2
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 9.5e-84 314.7 365 45.2
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 2.8e-83 313.2 563 37.7
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 3.6e-83 312.8 366 45.6
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.4e-82 310.8 310 54.2
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 1.4e-82 310.8 210 73.8
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.8e-82 310.5 209 74.2
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 2.0e-78 297.0 207 71.5
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.3e-76 289.7 210 70.0
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 1.2e-70 271.2 303 47.9
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 4.3e-68 262.7 318 48.1
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 6.8e-66 255.4 207 63.3
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 7.6e-65 251.9 218 59.2
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.7e-64 250.8 218 58.7
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 1.2e-62 244.6 316 42.7
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.1e-62 243.8 162 72.8
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 3.0e-61 240.0 378 38.4
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.1e-60 238.0 155 77.4
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.9e-60 237.3 310 44.5
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 4.3e-60 236.1 164 71.3
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 9.6e-60 235.0 164 70.7
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.1e-59 233.8 164 70.7
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 2.1e-59 233.8 161 68.9
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.6e-59 233.0 159 71.7
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 4.7e-59 232.6 222 59.5
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.4e-58 231.1 167 70.1
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 5.2e-58 229.2 161 71.4
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.3e-56 224.6 164 69.5
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 6.4e-56 222.2 208 54.8
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 1.9e-55 220.7 341 38.7
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 8.7e-53 211.8 122 86.9
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 9.6e-52 208.4 204 53.9
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 1.3e-51 208.0 380 35.0
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.6e-51 206.5 189 59.3
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 6.2e-51 205.7 284 44.0
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 9.9e-49 198.4 374 35.0
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 2.9e-48 196.8 370 33.0
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 6.4e-48 195.7 373 33.8
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.3e-45 188.0 138 68.8
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.9e-44 184.1 375 32.8
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 6.9e-42 175.6 374 32.4
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 3.4e-41 173.3 121 69.4
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 9.3e-39 165.2 163 52.8
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.9e-37 159.8 152 55.9
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 9.6e-36 155.2 106 70.8
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 1.3e-35 154.8 257 37.7
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 3.1e-34 150.2 136 58.8
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 4.5e-33 146.4 139 56.1
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 1.2e-30 138.3 173 42.8
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 1.7e-24 117.9 128 43.8
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 6.7e-21 105.9 284 28.5
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 1.1e-12 78.6 309 26.9


User provided reference genes

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