Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402003998 Solanum tuberosum HOM05D000055 ORTHO05D394742 4.0e-81 304.7 152 100.0
Solyc11g005660.2 Solanum lycopersicum HOM05D000055 ORTHO05D001675 1.8e-12 76.6 42 76.2
PGSC0003DMG401003998 Solanum tuberosum HOM05D000055 ORTHO05D001675 1.8e-12 76.6 42 78.6
Sopen11g001610 Solanum pennellii HOM05D000055 ORTHO05D001675 4.0e-12 75.5 42 76.2
CAN.G506.7 Capsicum annuum HOM05D000055 ORTHO05D001675 1.2e-11 73.9 42 73.8
Nitab4.5_0003791g0060 Nicotiana tabacum HOM05D000055 ORTHO05D001675 8.3e-10 67.8 42 64.3
Nitab4.5_0000320g0070 Nicotiana tabacum HOM05D000055 ORTHO05D001675 1.1e-09 67.4 42 66.7
Nitab4.5_0006112g0020 Nicotiana tabacum HOM05D000059 ORTHO05D001675 1.1e-09 67.4 42 66.7
Aqoxy6G00376 Aquilegia oxysepala HOM05D000055 ORTHO05D001675 1.8e-09 66.6 51 56.9
Lj2A593G33 Lonicera japonica HOM05D000055 ORTHO05D001675 1.2e-08 63.9 51 52.9
Actinidia06654 Actinidia chinensis HOM05D000055 ORTHO05D001675 2.0e-08 63.2 152 30.3
vmacro12835 Vaccinium macrocarpon HOM05D000055 ORTHO05D001675 2.0e-08 63.2 51 49.0
TAR628G0056 Trochodendron aralioides HOM05D000055 ORTHO05D001675 7.8e-08 61.2 42 57.1
MBI17_g11162_MAGBIO Magnolia biondii HOM05D000055 ORTHO05D001675 1.0e-07 60.8 51 49.0
Cc07_g17460 Coffea canephora HOM05D000055 ORTHO05D001675 1.3e-07 60.5 51 49.0
Oeu015845.1 Olea europaea HOM05D000055 ORTHO05D001675 1.7e-07 60.1 51 47.1
Sp1g36070 Schrenkiella parvula HOM05D000055 ORTHO05D001675 1.7e-07 60.1 52 50.0
AUR62017926 Chenopodium quinoa HOM05D000055 ORTHO05D001675 2.3e-07 59.7 51 49.0
MD07G1181900 Malus domestica HOM05D000055 ORTHO05D001675 2.3e-07 59.7 51 49.0
CBR_g36585 Chara braunii HOM05D000055 ORTHO05D001675 3.0e-07 59.3 50 52.0
PSO541G0819 Papaver somniferum HOM05D000055 ORTHO05D001675 3.0e-07 59.3 51 47.1
Prupe.6G164600 Prunus persica HOM05D000055 ORTHO05D001675 3.0e-07 59.3 42 57.1
MD01G1113800 Malus domestica HOM05D000055 ORTHO05D001675 3.9e-07 58.9 51 49.0
Manes.13G087500 Manihot esculenta HOM05D000055 ORTHO05D001675 3.9e-07 58.9 51 49.0
Dinv18496 Davidia involucrata HOM05D000055 ORTHO05D001675 5.0e-07 58.5 51 47.1
Actinidia06655 Actinidia chinensis HOM05D000055 ORTHO05D001675 6.6e-07 58.2 51 45.1
Cfa002861 Carpinus fangiana HOM05D000038 ORTHO05D010472 6.6e-07 58.2 42 52.4
Thecc.01G123400 Theobroma cacao HOM05D000055 ORTHO05D001675 6.6e-07 58.2 51 45.1
EL10Ac6g15265 Beta vulgaris HOM05D000055 ORTHO05D001675 8.6e-07 57.8 51 49.0
Haze_25170 Corylus avellana HOM05D000055 ORTHO05D001675 8.6e-07 57.8 42 50.0
Peaxi162Scf00896g00114 Petunia axillaris HOM05D000055 ORTHO05D001675 8.6e-07 57.8 32 71.9
Prupe.6G165600 Prunus persica HOM05D000055 ORTHO05D001675 8.6e-07 57.8 69 43.5
Sc07g0001660 Simmondsia chinensis HOM05D000055 ORTHO05D001675 8.6e-07 57.8 51 49.0
GSVIVG01026573001 Vitis vinifera HOM05D000055 ORTHO05D001675 8.6e-07 57.8 51 45.1
Actinidia06657 Actinidia chinensis HOM05D000055 ORTHO05D001675 1.1e-06 57.4 63 42.9
CiPaw.03G125000 Carya illinoinensis HOM05D000055 ORTHO05D001675 1.1e-06 57.4 42 50.0
AUR62003615 Chenopodium quinoa HOM05D000055 ORTHO05D001675 1.1e-06 57.4 51 47.1
Gohir.D11G058900 Gossypium hirsutum HOM05D000055 ORTHO05D001675 1.1e-06 57.4 46 47.8
Gorai.007G063800 Gossypium raimondii HOM05D000055 ORTHO05D001675 1.1e-06 57.4 44 50.0
Nn1g06128 Nelumbo nucifera HOM05D000055 ORTHO05D001675 1.1e-06 57.4 51 45.1
Cfa002856 Carpinus fangiana HOM05D000055 ORTHO05D001675 1.5e-06 57.0 42 50.0
VMungo1309G1706 Vigna mungo HOM05D000055 ORTHO05D001675 1.5e-06 57.0 41 51.2
MSTRG.19060 Avicennia marina HOM05D000055 ORTHO05D001675 1.9e-06 56.6 50 50.0
Haze_25154 Corylus avellana HOM05D000038 ORTHO05D000143 1.9e-06 56.6 42 50.0
Rhsim10G0140600 Rhododendron simsii HOM05D002865 ORTHO05D003289 1.9e-06 56.6 89 34.8
AT1G49180 Arabidopsis thaliana HOM05D000055 ORTHO05D001675 2.5e-06 56.2 43 51.2
CSS0039644 Camellia sinensis var. sinensis HOM05D000055 ORTHO05D109619 2.5e-06 56.2 56 48.2
Duzib138G1250 Durio zibethinus HOM05D000055 ORTHO05D001675 2.5e-06 56.2 50 48.0
Gohir.A11G055100 Gossypium hirsutum HOM05D000055 ORTHO05D001675 2.5e-06 56.2 51 43.1
Lalb_Chr23g0272531 Lupinus albus HOM05D000055 ORTHO05D001675 2.5e-06 56.2 63 39.7
Sabra06G0070600 Salix brachista HOM05D000055 ORTHO05D001675 2.5e-06 56.2 41 53.7
ATR0559G304 Amborella trichopoda HOM05D000055 ORTHO05D001675 3.3e-06 55.8 54 44.4
COL.COLO4_14716 Corchorus olitorius HOM05D000055 ORTHO05D001675 3.3e-06 55.8 46 50.0
Glyma.04G215500 Glycine max HOM05D000055 ORTHO05D001675 3.3e-06 55.8 41 51.2
QL07p028568 Quercus lobata HOM05D000055 ORTHO05D001675 3.3e-06 55.8 42 52.4
Aa31LG10G5070 Aethionema arabicum HOM05D000055 ORTHO05D001675 4.3e-06 55.5 41 51.2
Migut.L01969 Erythranthe guttata HOM05D000055 ORTHO05D001675 4.3e-06 55.5 41 53.7
Nitab4.5_0000362g0050 Nicotiana tabacum HOM05D000055 ORTHO05D001675 4.3e-06 55.5 44 52.3
Nitab4.5_0006535g0020 Nicotiana tabacum HOM05D000038 ORTHO05D001675 4.3e-06 55.5 44 52.3
PSO339G0089 Papaver somniferum HOM05D000055 ORTHO05D001675 4.3e-06 55.5 54 44.4
PSO513G0088 Papaver somniferum HOM05D000055 ORTHO05D001675 4.3e-06 55.5 54 44.4
Peaxi162Scf00094g00112 Petunia axillaris HOM05D000055 ORTHO05D001675 4.3e-06 55.5 43 53.5
Potri.019G007200 Populus trichocarpa HOM05D000055 ORTHO05D001675 4.3e-06 55.5 51 43.1
Potri.019G011300 Populus trichocarpa HOM05D000055 ORTHO05D001675 4.3e-06 55.5 51 43.1
Potri.019G011600 Populus trichocarpa HOM05D000055 ORTHO05D001675 4.3e-06 55.5 51 43.1
Hund15242 Selenicereus undatus HOM05D000055 ORTHO05D001675 4.3e-06 55.5 63 41.3
TPR.G18715 Trifolium pratense HOM05D000055 ORTHO05D001675 4.3e-06 55.5 50 44.0
CAN.G229.32 Capsicum annuum HOM05D000055 ORTHO05D001675 5.6e-06 55.1 42 52.4
HanXRQChr04g0124561 Helianthus annuus HOM05D000055 ORTHO05D001675 5.6e-06 55.1 42 52.4
HanXRQChr06g0177391 Helianthus annuus HOM05D000055 ORTHO05D001675 5.6e-06 55.1 42 52.4
Solyc09g011320.3 Solanum lycopersicum HOM05D000055 ORTHO05D001675 5.6e-06 55.1 42 52.4
Sopen09g006040 Solanum pennellii HOM05D000055 ORTHO05D001675 5.6e-06 55.1 42 52.4
PGSC0003DMG400008887 Solanum tuberosum HOM05D000055 ORTHO05D001675 5.6e-06 55.1 42 52.4
unitig_8.g4425 Utricularia gibba HOM05D000055 ORTHO05D001675 5.6e-06 55.1 42 52.4
AL1G56050 Arabidopsis lyrata HOM05D000055 ORTHO05D001675 7.3e-06 54.7 43 51.2
arahy.Tifrunner.gnm1.ann1.H9N4IX Arachis hypogaea HOM05D000055 ORTHO05D001675 7.3e-06 54.7 41 48.8
arahy.Tifrunner.gnm1.ann1.RI3CBK Arachis hypogaea HOM05D000055 ORTHO05D001675 7.3e-06 54.7 41 48.8
Carub.0001s3837 Capsella rubella HOM05D000055 ORTHO05D001675 7.3e-06 54.7 43 51.2
CARHR039180 Cardamine hirsuta HOM05D000055 ORTHO05D001675 7.3e-06 54.7 43 51.2
Duzib133G0040 Durio zibethinus HOM05D000055 ORTHO05D001675 7.3e-06 54.7 63 41.3
Nitab4.5_0000828g0030 Nicotiana tabacum HOM05D000055 ORTHO05D001675 7.3e-06 54.7 55 45.5
Nitab4.5_0006391g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 7.3e-06 54.7 47 48.9
TWI53G0243 Tripterygium wilfordii HOM05D000055 ORTHO05D001675 7.3e-06 54.7 41 51.2
TWI59G0827 Tripterygium wilfordii HOM05D000055 ORTHO05D001675 7.3e-06 54.7 41 51.2
Thhalv10011721m.g Eutrema salsugineum HOM05D000055 ORTHO05D001675 9.5e-06 54.3 41 51.2
Lsat_1_v5_gn_8_84601 Lactuca sativa HOM05D000055 ORTHO05D001675 9.5e-06 54.3 42 52.4
Solyc10g084930.2 Solanum lycopersicum HOM05D000055 ORTHO05D001675 9.5e-06 54.3 42 52.4
Sopen10g034390 Solanum pennellii HOM05D000055 ORTHO05D001675 9.5e-06 54.3 42 52.4
PGSC0003DMG400011011 Solanum tuberosum HOM05D000055 ORTHO05D001675 9.5e-06 54.3 42 52.4
THA.LOC104804907 Tarenaya hassleriana HOM05D000055 ORTHO05D001675 9.5e-06 54.3 50 44.0


User provided reference genes

Program Settings