Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402000916 Solanum tuberosum HOM05D004825 ORTHO05D005415 2.3e-99 365.5 185 100.0
Sopen11g007800 Solanum pennellii HOM05D004825 ORTHO05D005415 4.3e-77 291.6 171 88.9
Solyc11g018720.1 Solanum lycopersicum HOM05D004825 ORTHO05D005415 4.6e-71 271.6 180 77.2
Sopen11g009760 Solanum pennellii HOM05D004825 ORTHO05D005415 4.6e-71 271.6 180 77.2
CAN.G1086.4 Capsicum annuum HOM05D004825 ORTHO05D005415 1.1e-61 240.4 172 72.7
Nitab4.5_0000167g0010 Nicotiana tabacum HOM05D004825 ORTHO05D005415 1.6e-60 236.5 183 71.0
Nitab4.5_0004158g0060 Nicotiana tabacum HOM05D004825 ORTHO05D005415 9.0e-59 230.7 182 70.3
Solyc11g013060.1 Solanum lycopersicum HOM05D004825 ORTHO05D005415 1.5e-58 229.9 136 86.8
Peaxi162Scf01013g00123 Petunia axillaris HOM05D004825 ORTHO05D005415 1.2e-31 140.6 136 66.2
Cc09_g03390 Coffea canephora HOM05D004825 ORTHO05D005415 3.5e-26 122.5 167 47.9
Dinv09864 Davidia involucrata HOM05D004825 ORTHO05D005415 8.0e-23 111.3 152 50.7
GSVIVG01019145001 Vitis vinifera HOM05D004825 ORTHO05D005415 2.3e-22 109.8 178 44.4
Manes.09G172300 Manihot esculenta HOM05D004825 ORTHO05D005415 4.4e-21 105.5 108 53.7
Ah.06g195620 Amaranthus hybridus HOM05D004825 ORTHO05D005415 5.7e-21 105.1 134 44.8
QL02p047782 Quercus lobata HOM05D004825 ORTHO05D005415 9.7e-21 104.4 71 70.4
Actinidia06813 Actinidia chinensis HOM05D004825 ORTHO05D005415 1.3e-20 104.0 141 46.1
AUR62006702 Chenopodium quinoa HOM05D004825 ORTHO05D005415 3.7e-20 102.4 115 47.8
EL10Ac4g09418 Beta vulgaris HOM05D004825 ORTHO05D005415 4.8e-20 102.1 121 46.3
Ciclev10007912m.g Citrus clementina HOM05D004825 ORTHO05D005415 6.3e-20 101.7 139 43.2
DCAR_003341 Daucus carota HOM05D004825 ORTHO05D005415 1.4e-19 100.5 88 56.8
Manes.09G184100 Manihot esculenta HOM05D004825 ORTHO05D005415 1.4e-19 100.5 117 50.4
Atru.chr12.2135 Acer truncatum HOM05D004825 ORTHO05D005415 2.4e-19 99.8 132 50.8
Eucgr.B01387 Eucalyptus grandis HOM05D004825 ORTHO05D005415 2.4e-19 99.8 61 75.4
Hund07323 Selenicereus undatus HOM05D004825 ORTHO05D005415 2.4e-19 99.8 109 50.5
AUR62000357 Chenopodium quinoa HOM05D004825 ORTHO05D005415 3.1e-19 99.4 69 60.9
Hma1.2p1_0220F.1_g093020 Hydrangea macrophylla HOM05D004825 ORTHO05D005415 3.1e-19 99.4 65 76.9
TWI59G0982 Tripterygium wilfordii HOM05D004825 ORTHO05D005415 3.1e-19 99.4 135 48.9
Haze_04525 Corylus avellana HOM05D004825 ORTHO05D005415 7.0e-19 98.2 114 46.5
Duzib128G0048 Durio zibethinus HOM05D004825 ORTHO05D005415 9.1e-19 97.8 69 65.2
Gohir.A09G053832 Gossypium hirsutum HOM05D004825 ORTHO05D005415 9.1e-19 97.8 69 65.2
Gohir.D09G053068 Gossypium hirsutum HOM05D004825 ORTHO05D005415 9.1e-19 97.8 69 65.2
Gorai.006G054700 Gossypium raimondii HOM05D004825 ORTHO05D005415 9.1e-19 97.8 69 65.2
MD12G1258300 Malus domestica HOM05D004825 ORTHO05D005415 1.2e-18 97.4 155 43.9
CiPaw.07G074800 Carya illinoinensis HOM05D004825 ORTHO05D005415 1.6e-18 97.1 145 42.1
Cpa.g.sc18.187 Carica papaya HOM05D004825 ORTHO05D005415 2.0e-18 96.7 129 48.1
CANSAT54G0263 Cannabis sativa HOM05D004825 ORTHO05D005415 2.7e-18 96.3 79 55.7
Cfa006284 Carpinus fangiana HOM05D004825 ORTHO05D005415 2.7e-18 96.3 114 45.6
MSTRG.10886 Avicennia marina HOM05D004825 ORTHO05D005415 5.9e-18 95.1 175 38.3
Migut.I01185 Erythranthe guttata HOM05D004825 ORTHO05D005415 1.3e-17 94.0 179 37.4
Sabra13G0069900 Salix brachista HOM05D004825 ORTHO05D005415 1.3e-17 94.0 75 57.3
SGA_v2.0_scaffold122G33281 Striga asiatica HOM05D004825 ORTHO05D005415 6.5e-17 91.7 179 39.7
Thecc.05G205800 Theobroma cacao HOM05D004825 ORTHO05D005415 6.5e-17 91.7 60 70.0
TAR374G0592 Trochodendron aralioides HOM05D004825 ORTHO05D005415 6.5e-17 91.7 144 43.8
FAN05G3281 Fragaria x ananassa HOM05D004825 ORTHO05D005415 1.1e-16 90.9 142 40.1
FAN09G1822 Fragaria x ananassa HOM05D004825 ORTHO05D005415 1.1e-16 90.9 121 45.5
THA.LOC104805710 Tarenaya hassleriana HOM05D004825 ORTHO05D005415 1.9e-16 90.1 128 42.2
Prupe.6G359000 Prunus persica HOM05D004825 ORTHO05D005415 2.5e-16 89.7 162 41.4
FAN14G5305 Fragaria x ananassa HOM05D004825 ORTHO05D005415 3.2e-16 89.4 141 41.1
Lj1g0016449 Lotus japonicus HOM05D004825 ORTHO05D005415 3.2e-16 89.4 177 37.9
VMungo1383G1726 Vigna mungo HOM05D004825 ORTHO05D005415 3.2e-16 89.4 127 44.9
RcHm_v2.0_Chr3g0448251 Rosa chinensis HOM05D004825 ORTHO05D005415 5.5e-16 88.6 163 41.1
COL.COLO4_07809 Corchorus olitorius HOM05D004825 ORTHO05D005415 9.4e-16 87.8 69 58.0
MELO3C008585.2 Cucumis melo HOM05D004825 ORTHO05D005415 9.4e-16 87.8 152 38.2
FAN02G3908 Fragaria x ananassa HOM05D004825 ORTHO05D005415 1.2e-15 87.4 64 62.5
Sc06g0005090 Simmondsia chinensis HOM05D004825 ORTHO05D005415 1.2e-15 87.4 172 40.1
CsaV3_2G010380 Cucumis sativus L. HOM05D004825 ORTHO05D005415 1.6e-15 87.0 172 39.5
BcaC03g14673 Brassica carinata HOM05D004825 ORTHO05D005415 4.7e-15 85.5 63 61.9
Glyma.18G240200 Glycine max HOM05D004825 ORTHO05D005415 4.7e-15 85.5 132 39.4
Nn3g16227 Nelumbo nucifera HOM05D004825 ORTHO05D005415 4.7e-15 85.5 60 66.7
arahy.Tifrunner.gnm1.ann1.B3BVJM Arachis hypogaea HOM05D004825 ORTHO05D005415 8.0e-15 84.7 60 65.0
arahy.Tifrunner.gnm1.ann1.T0KW2L Arachis hypogaea HOM05D004825 ORTHO05D005415 8.0e-15 84.7 60 65.0
SalBow6G0845 Salvia bowleyana HOM05D004825 ORTHO05D005415 8.0e-15 84.7 68 60.3
Medtr7g079500 Medicago truncatula HOM05D004825 ORTHO05D005415 1.8e-14 83.6 123 43.1
Potri.013G087950 Populus trichocarpa HOM05D004825 ORTHO05D005415 1.8e-14 83.6 128 41.4
TPR.G29414 Trifolium pratense HOM05D004825 ORTHO05D005415 1.8e-14 83.6 102 47.1
ClCG11G007440 Citrullus lanatus HOM05D004825 ORTHO05D005415 2.3e-14 83.2 174 34.5
MD12G1258500 Malus domestica HOM05D004825 ORTHO05D005415 3.0e-14 82.8 88 50.0
A02p13010 Brassica napus HOM05D004825 ORTHO05D005415 5.2e-14 82.0 61 62.3
BolC2t08253H Brassica oleracea HOM05D004825 ORTHO05D005415 5.2e-14 82.0 62 61.3
BraA02t06357Z Brassica rapa HOM05D004825 ORTHO05D005415 5.2e-14 82.0 61 62.3
Aa31LG2G2270 Aethionema arabicum HOM05D004825 ORTHO05D005415 1.2e-13 80.9 64 59.4
Phvul.008G056000 Phaseolus vulgaris HOM05D004825 ORTHO05D005415 1.5e-13 80.5 109 45.0
PGR119G2407 Punica granatum HOM05D004825 ORTHO05D005415 1.5e-13 80.5 66 57.6
Aqoxy1G01799 Aquilegia oxysepala HOM05D004825 ORTHO05D005415 2.0e-13 80.1 63 58.7
BcaB05g24081 Brassica carinata HOM05D004825 ORTHO05D005415 2.0e-13 80.1 70 52.9
PGR119G0192 Punica granatum HOM05D004825 ORTHO05D005415 2.0e-13 80.1 129 41.1
Carub.0002s1042 Capsella rubella HOM05D004825 ORTHO05D005415 3.4e-13 79.3 61 57.4
DCAR_026472 Daucus carota HOM05D004825 ORTHO05D005415 3.4e-13 79.3 66 54.5
C02p21130 Brassica napus HOM05D004825 ORTHO05D005415 4.4e-13 79.0 59 62.7
MBI11_g43072_MAGBIO Magnolia biondii HOM05D004825 ORTHO05D005415 4.4e-13 79.0 174 39.7
AT1G65080 Arabidopsis thaliana HOM05D004825 ORTHO05D005415 5.7e-13 78.6 60 58.3
Sed0020944 Sechium edule HOM05D004825 ORTHO05D005415 7.5e-13 78.2 164 39.6
THA.LOC104814783 Tarenaya hassleriana HOM05D004825 ORTHO05D005415 9.8e-13 77.8 68 54.4
AL2G19720 Arabidopsis lyrata HOM05D004825 ORTHO05D005415 2.8e-12 76.3 70 50.0
PSO478G4613 Papaver somniferum HOM05D004825 ORTHO05D005415 3.7e-12 75.9 76 50.0
Ca_07962_v3 Cicer arietinum L. HOM05D004825 ORTHO05D005415 8.3e-12 74.7 126 38.1
PSO017G3896 Papaver somniferum HOM05D004825 ORTHO05D005415 8.3e-12 74.7 76 50.0
Thhalv10022463m.g Eutrema salsugineum HOM05D004825 ORTHO05D005415 1.8e-11 73.6 60 53.3
HanXRQChr01g0025761 Helianthus annuus HOM05D004825 ORTHO05D005415 3.1e-11 72.8 179 34.6
Lalb_Chr19g0126781 Lupinus albus HOM05D004825 ORTHO05D005415 4.1e-11 72.4 182 34.1
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 5.4e-11 72.0 129 35.7
ATR0582G066 Amborella trichopoda HOM05D004825 ORTHO05D005415 5.4e-11 72.0 154 32.5
Thhalv10010266m.g Eutrema salsugineum HOM05D004825 ORTHO05D005415 7.0e-11 71.6 67 50.7
Carub.0005s1010 Capsella rubella HOM05D004825 ORTHO05D005415 9.1e-11 71.2 131 37.4
HPP92_007971 Vanilla planifolia HOM05D004825 ORTHO05D005415 1.2e-10 70.9 64 43.8
BcaB01g01166 Brassica carinata HOM05D004825 ORTHO05D005415 1.6e-10 70.5 104 42.3
CDE02G0647 Ceratophyllum demersum HOM05D004825 ORTHO05D005415 2.7e-10 69.7 73 46.6
BcaC01g02045 Brassica carinata HOM05D004825 ORTHO05D005415 4.5e-10 68.9 67 49.3
A06p22020 Brassica napus HOM05D004825 ORTHO05D005415 4.5e-10 68.9 106 42.5
C03p69210 Brassica napus HOM05D004825 ORTHO05D005415 4.5e-10 68.9 67 49.3
BolC3t19174H Brassica oleracea HOM05D004825 ORTHO05D005415 4.5e-10 68.9 67 49.3
CARHR104500 Cardamine hirsuta HOM05D004825 ORTHO05D005415 5.9e-10 68.6 96 39.6
Sp5g16820 Schrenkiella parvula HOM05D004825 ORTHO05D005415 7.7e-10 68.2 109 39.4
BraA06t25290Z Brassica rapa HOM05D004825 ORTHO05D005415 1.0e-09 67.8 106 41.5
RcHm_v2.0_Chr3g0448211 Rosa chinensis HOM05D004825 ORTHO05D005415 1.3e-09 67.4 144 32.6
AT3G44370 Arabidopsis thaliana HOM05D004825 ORTHO05D005415 2.3e-09 66.6 51 54.9
AL5G22530 Arabidopsis lyrata HOM05D004825 ORTHO05D005415 2.9e-09 66.2 106 39.6
Lsat_1_v5_gn_8_2080 Lactuca sativa HOM05D004825 ORTHO05D005415 3.8e-09 65.9 193 33.7
Os06g0171600 Oryza sativa ssp. japonica HOM05D004825 ORTHO05D005415 8.6e-09 64.7 54 51.9
Zm00001eb375410 Zea mays HOM05D004825 ORTHO05D005415 1.9e-08 63.5 64 45.3
Sp5g19610 Schrenkiella parvula HOM05D004825 ORTHO05D005415 7.2e-08 61.6 62 46.8
SpUn0108_0010 Schrenkiella parvula HOM05D004825 ORTHO05D005415 7.2e-08 61.6 62 46.8
AagrBONN_evm.TU.Sc2ySwM_340.165 Anthoceros agrestis HOM05D004825 ORTHO05D005415 6.1e-07 58.5 55 49.1
Duzib205G0860 Durio zibethinus HOM05D002290 ORTHO05D002532 1.4e-06 57.4 123 32.5
ECA233G4148 Erigeron canadensis HOM05D004825 ORTHO05D005415 1.8e-06 57.0 72 38.9
Lj2A408T57 Lonicera japonica HOM05D004825 ORTHO05D005415 3.0e-06 56.2 105 37.1
SalBow1G4018 Salvia bowleyana HOM05D002290 ORTHO05D002532 3.0e-06 56.2 188 28.7
CARHR275840 Cardamine hirsuta HOM05D002290 ORTHO05D002532 5.2e-06 55.5 102 30.4
SEGI_16462 Sequoiadendron giganteum HOM05D004825 ORTHO05D005415 5.2e-06 55.5 138 28.3
Psat4g003840 Pisum sativum HOM05D002290 ORTHO05D002532 6.8e-06 55.1 113 31.0
Sed0014582 Sechium edule HOM05D002290 ORTHO05D002532 6.8e-06 55.1 139 30.9
CAN.G532.120 Capsicum annuum HOM05D002290 ORTHO05D002532 8.8e-06 54.7 124 29.8
Glyma.07G235200 Glycine max HOM05D002290 ORTHO05D002532 8.8e-06 54.7 135 28.9


User provided reference genes

Program Settings