Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401031076 Solanum tuberosum HOM05D002746 ORTHO05D003037 1.0e-79 300.1 155 100.0
Sopen11g003940 Solanum pennellii HOM05D002746 ORTHO05D003037 4.7e-77 291.2 155 96.1
Solyc11g008090.2 Solanum lycopersicum HOM05D002746 ORTHO05D003037 4.1e-73 278.1 155 93.5
CAN.G459.30 Capsicum annuum HOM05D002746 ORTHO05D003037 1.3e-58 229.9 178 72.5
Peaxi162Scf00982g00011 Petunia axillaris HOM05D002746 ORTHO05D003037 1.3e-42 176.8 187 55.1
Nitab4.5_0002285g0050 Nicotiana tabacum HOM05D002746 ORTHO05D003037 2.7e-40 169.1 173 59.5
Nitab4.5_0000096g0260 Nicotiana tabacum HOM05D002746 ORTHO05D003037 9.6e-38 160.6 156 59.6
Peaxi162Scf00176g01630 Petunia axillaris HOM05D002746 ORTHO05D003037 2.1e-37 159.5 156 58.3
Nitab4.5_0002692g0020 Nicotiana tabacum HOM05D002746 ORTHO05D003037 5.3e-36 154.8 156 59.0
CAN.G694.42 Capsicum annuum HOM05D002746 ORTHO05D003037 5.1e-31 138.3 168 50.0
Nitab4.5_0004987g0050 Nicotiana tabacum HOM05D002746 ORTHO05D003037 3.4e-27 125.6 152 50.7
Oeu046646.1 Olea europaea HOM05D002746 ORTHO05D003037 2.1e-24 116.3 156 48.7
Dinv36375 Davidia involucrata HOM05D002746 ORTHO05D003037 1.2e-19 100.5 162 45.1
SGA_v2.0_scaffold51G18717 Striga asiatica HOM05D002746 ORTHO05D003037 3.4e-19 99.0 147 50.3
MSTRG.8123 Avicennia marina HOM05D002746 ORTHO05D003037 1.4e-17 93.6 161 44.1
Nn2g13843 Nelumbo nucifera HOM05D002746 ORTHO05D003037 1.4e-17 93.6 163 42.3
CSS0002034 Camellia sinensis var. sinensis HOM05D002746 ORTHO05D003037 4.2e-17 92.0 163 38.7
SGA_v2.0_scaffold2G01341 Striga asiatica HOM05D002746 ORTHO05D003037 9.3e-17 90.9 158 47.5
Dinv31245 Davidia involucrata HOM05D002746 ORTHO05D003037 2.1e-16 89.7 158 42.4
GSVIVG01016210001 Vitis vinifera HOM05D002746 ORTHO05D003037 1.8e-15 86.7 157 41.4
Lalb_Chr21g0312871 Lupinus albus HOM05D002746 ORTHO05D003037 2.3e-15 86.3 150 38.7
Migut.F01943 Erythranthe guttata HOM05D002746 ORTHO05D003037 3.0e-15 85.9 162 43.2
Migut.F01699 Erythranthe guttata HOM05D002746 ORTHO05D003037 3.9e-15 85.5 153 44.4
PGR142G3471 Punica granatum HOM05D002746 ORTHO05D003037 3.9e-15 85.5 151 39.7
TAR369G0776 Trochodendron aralioides HOM05D002746 ORTHO05D003037 5.1e-15 85.1 154 39.0
MSTRG.9139 Avicennia marina HOM05D002746 ORTHO05D003037 6.7e-15 84.7 156 40.4
Hma1.2p1_0117F.1_g056370 Hydrangea macrophylla HOM05D002746 ORTHO05D003037 6.7e-15 84.7 159 42.8
TAR636G2586 Trochodendron aralioides HOM05D002746 ORTHO05D003037 6.7e-15 84.7 165 39.4
Aqoxy1G01110 Aquilegia oxysepala HOM05D002746 ORTHO05D003037 8.7e-15 84.3 118 42.4
SalBow4G2846 Salvia bowleyana HOM05D002746 ORTHO05D003037 1.9e-14 83.2 135 40.7
Thecc.10G087200 Theobroma cacao HOM05D002746 ORTHO05D003037 4.3e-14 82.0 109 47.7
Lj5g0007739 Lotus japonicus HOM05D002746 ORTHO05D003037 5.7e-14 81.6 117 41.9
Ciclev10028947m.g Citrus clementina HOM05D002746 ORTHO05D003037 1.3e-13 80.5 127 42.5
Haze_23708 Corylus avellana HOM05D002746 ORTHO05D003037 6.3e-13 78.2 147 40.1
Cfa010292 Carpinus fangiana HOM05D002746 ORTHO05D003037 1.1e-12 77.4 175 35.4
Potri.009G006100 Populus trichocarpa HOM05D002746 ORTHO05D003037 1.1e-12 77.4 159 34.6
COL.COLO4_11106 Corchorus olitorius HOM05D002746 ORTHO05D003037 3.1e-12 75.9 159 39.0
ECA233G0311 Erigeron canadensis HOM05D002746 ORTHO05D003037 4.1e-12 75.5 125 38.4
vmacro14395 Vaccinium macrocarpon HOM05D002746 ORTHO05D003037 5.3e-12 75.1 145 40.7
arahy.Tifrunner.gnm1.ann1.89MG53 Arachis hypogaea HOM05D002746 ORTHO05D003037 6.9e-12 74.7 114 43.9
Eucgr.B03933 Eucalyptus grandis HOM05D002746 ORTHO05D003037 6.9e-12 74.7 166 35.5
TWI79G0510 Tripterygium wilfordii HOM05D002746 ORTHO05D003037 9.0e-12 74.3 164 37.8
TWI79G0630 Tripterygium wilfordii HOM05D002746 ORTHO05D003037 9.0e-12 74.3 164 37.8
HanXRQChr13g0404481 Helianthus annuus HOM05D002746 ORTHO05D003037 1.2e-11 73.9 153 37.3
vmacro10253 Vaccinium macrocarpon HOM05D002746 ORTHO05D003037 1.2e-11 73.9 128 43.0
Duzib150G0085 Durio zibethinus HOM05D002746 ORTHO05D003037 2.0e-11 73.2 149 38.3
Lj2A1009T38 Lonicera japonica HOM05D002746 ORTHO05D003037 2.0e-11 73.2 128 41.4
Rhsim11G0027700 Rhododendron simsii HOM05D002746 ORTHO05D003037 2.6e-11 72.8 147 38.8
Thecc.09G350400 Theobroma cacao HOM05D002746 ORTHO05D003037 2.6e-11 72.8 135 37.8
TWI63G0026 Tripterygium wilfordii HOM05D002746 ORTHO05D003037 2.6e-11 72.8 119 46.2
Duzib170G0446 Durio zibethinus HOM05D002746 ORTHO05D003037 3.4e-11 72.4 147 39.5
MD03G1126800 Malus domestica HOM05D002746 ORTHO05D003037 3.4e-11 72.4 159 35.2
Prupe.6G111900 Prunus persica HOM05D002746 ORTHO05D003037 3.4e-11 72.4 160 35.0
ECA232G1997 Erigeron canadensis HOM05D002746 ORTHO05D003037 4.5e-11 72.0 156 39.7
Atru.chr3.3527 Acer truncatum HOM05D002746 ORTHO05D003037 5.9e-11 71.6 119 41.2
Cc02_g10720 Coffea canephora HOM05D002746 ORTHO05D003037 5.9e-11 71.6 215 32.6
Gohir.D05G293300 Gossypium hirsutum HOM05D002746 ORTHO05D003037 5.9e-11 71.6 151 40.4
CSS0033737 Camellia sinensis var. sinensis HOM05D002746 ORTHO05D003037 7.7e-11 71.2 194 34.5
CiPaw.13G123400 Carya illinoinensis HOM05D002746 ORTHO05D003037 7.7e-11 71.2 132 40.2
Duzib168G1483 Durio zibethinus HOM05D002746 ORTHO05D003037 7.7e-11 71.2 130 39.2
Actinidia03695 Actinidia chinensis HOM05D002746 ORTHO05D003037 1.3e-10 70.5 145 39.3
Manes.04G013601 Manihot esculenta HOM05D002746 ORTHO05D003037 1.3e-10 70.5 145 38.6
CSS0020443 Camellia sinensis var. sinensis HOM05D006101 ORTHO05D007422 1.7e-10 70.1 145 37.9
CSS0026133 Camellia sinensis var. sinensis HOM05D006101 ORTHO05D007422 1.7e-10 70.1 145 37.9
Medtr1g090657 Medicago truncatula HOM05D002746 ORTHO05D003037 1.7e-10 70.1 118 37.3
Nn6g35239 Nelumbo nucifera HOM05D002746 ORTHO05D003037 2.2e-10 69.7 160 37.5
Lalb_Chr02g0151001 Lupinus albus HOM05D002746 ORTHO05D003037 2.9e-10 69.3 113 36.3
Lalb_Chr06g0169891 Lupinus albus HOM05D002746 ORTHO05D003037 2.9e-10 69.3 143 35.0
QL01p015272 Quercus lobata HOM05D002746 ORTHO05D003037 3.8e-10 68.9 131 39.7
Sabra09G0003400 Salix brachista HOM05D002746 ORTHO05D003037 3.8e-10 68.9 116 39.7
COL.COLO4_09863 Corchorus olitorius HOM05D002746 ORTHO05D003037 5.0e-10 68.6 109 43.1
Glyma.10G196400 Glycine max HOM05D002746 ORTHO05D003037 5.0e-10 68.6 138 37.0
Potri.004G216000 Populus trichocarpa HOM05D002746 ORTHO05D003037 6.5e-10 68.2 158 38.0
Glyma.20G193800 Glycine max HOM05D002746 ORTHO05D003037 8.5e-10 67.8 153 32.0
MBI13_g39327_MAGBIO Magnolia biondii HOM05D002746 ORTHO05D003037 8.5e-10 67.8 159 32.1
Rhsim09G0146600 Rhododendron simsii HOM05D002746 ORTHO05D003037 8.5e-10 67.8 157 38.9
MELO3C019841.2 Cucumis melo HOM05D002746 ORTHO05D003037 1.4e-09 67.0 139 37.4
TWI75G0416 Tripterygium wilfordii HOM05D002746 ORTHO05D003037 1.4e-09 67.0 117 41.9
MD11G1147400 Malus domestica HOM05D002746 ORTHO05D003037 1.9e-09 66.6 148 35.1
Peaxi162Scf00086g01014 Petunia axillaris HOM05D002746 ORTHO05D003037 1.9e-09 66.6 143 38.5
GSVIVG01031478001 Vitis vinifera HOM05D002746 ORTHO05D003037 1.9e-09 66.6 150 34.0
PGR119G0855 Punica granatum HOM05D002746 ORTHO05D003037 3.2e-09 65.9 147 34.7
CAN.G546.40 Capsicum annuum HOM05D002746 ORTHO05D003037 5.5e-09 65.1 158 35.4
AUR62029178 Chenopodium quinoa HOM05D002746 ORTHO05D003037 5.5e-09 65.1 150 35.3
DCAR_019068 Daucus carota HOM05D002746 ORTHO05D003037 7.2e-09 64.7 206 31.1
Hma1.2p1_0779F.1_g216690 Hydrangea macrophylla HOM05D002746 ORTHO05D003037 7.2e-09 64.7 136 41.2
Actinidia34797 Actinidia chinensis HOM05D001960 ORTHO05D004348 9.4e-09 64.3 144 38.2
AUR62014958 Chenopodium quinoa HOM05D002746 ORTHO05D003037 9.4e-09 64.3 154 33.8
ClCG08G007860 Citrullus lanatus HOM05D002746 ORTHO05D003037 9.4e-09 64.3 128 38.3
Gorai.010G207300 Gossypium raimondii HOM05D002746 ORTHO05D003037 9.4e-09 64.3 115 36.5
Gohir.A05G107100 Gossypium hirsutum HOM05D002746 ORTHO05D003037 1.2e-08 63.9 143 34.3
Gorai.009G111300 Gossypium raimondii HOM05D002746 ORTHO05D003037 1.2e-08 63.9 143 34.3
TPR.G37751 Trifolium pratense HOM05D002746 ORTHO05D003037 1.2e-08 63.9 115 38.3
CiPaw.02G170900 Carya illinoinensis HOM05D002746 ORTHO05D003037 2.1e-08 63.2 206 33.0
Nitab4.5_0000329g0090 Nicotiana tabacum HOM05D002746 ORTHO05D003037 2.1e-08 63.2 137 37.2
HanXRQChr13g0396261 Helianthus annuus HOM05D002746 ORTHO05D003037 3.6e-08 62.4 138 36.2
Manes.11G151800 Manihot esculenta HOM05D002746 ORTHO05D003037 3.6e-08 62.4 98 41.8
Solyc11g066350.2 Solanum lycopersicum HOM05D002746 ORTHO05D003037 3.6e-08 62.4 144 37.5
PGSC0003DMG400000414 Solanum tuberosum HOM05D002746 ORTHO05D003037 3.6e-08 62.4 144 37.5
VMungo0720G3138 Vigna mungo HOM05D002746 ORTHO05D003037 3.6e-08 62.4 140 33.6
Nitab4.5_0003880g0010 Nicotiana tabacum HOM05D002746 ORTHO05D003037 4.6e-08 62.0 146 40.4
Lsat_1_v5_gn_6_44580 Lactuca sativa HOM05D002746 ORTHO05D003037 7.9e-08 61.2 154 35.7
Gorai.009G309800 Gossypium raimondii HOM05D002746 ORTHO05D003037 1.0e-07 60.8 145 37.2
SalBow6G2132 Salvia bowleyana HOM05D002746 ORTHO05D003037 1.0e-07 60.8 70 54.3
Sopen11g026100 Solanum pennellii HOM05D002746 ORTHO05D003037 1.0e-07 60.8 162 34.0
Actinidia06732 Actinidia chinensis HOM05D002746 ORTHO05D003037 1.4e-07 60.5 241 28.2
TWI38G1635 Tripterygium wilfordii HOM05D002746 ORTHO05D003037 1.4e-07 60.5 155 39.4
CsaV3_2G021060 Cucumis sativus L. HOM05D002746 ORTHO05D003037 1.8e-07 60.1 128 36.7
PSO339G4755 Papaver somniferum HOM05D002746 ORTHO05D003037 1.8e-07 60.1 148 34.5
Ca_10435_v3 Cicer arietinum L. HOM05D002746 ORTHO05D003037 2.3e-07 59.7 163 33.7
Dinv29373 Davidia involucrata HOM05D002746 ORTHO05D003037 2.3e-07 59.7 155 34.2
Actinidia18545 Actinidia chinensis HOM05D002746 ORTHO05D003037 3.0e-07 59.3 238 28.6
DCAR_006399 Daucus carota HOM05D002746 ORTHO05D003037 5.1e-07 58.5 110 41.8
Sabra08G0021500 Salix brachista HOM05D002746 ORTHO05D003037 5.1e-07 58.5 104 44.2
Gohir.A06G168700 Gossypium hirsutum HOM05D002746 ORTHO05D003037 6.7e-07 58.2 98 39.8
MD01G1100300 Malus domestica HOM05D002746 ORTHO05D003037 6.7e-07 58.2 113 39.8
CsaV3_1G013340 Cucumis sativus L. HOM05D002746 ORTHO05D003037 8.8e-07 57.8 123 37.4
PSO063G2563 Papaver somniferum HOM05D002746 ORTHO05D003037 8.8e-07 57.8 148 33.8
Gohir.D06G176308 Gossypium hirsutum HOM05D002746 ORTHO05D003037 2.0e-06 56.6 115 35.7
HPP92_008395 Vanilla planifolia HOM05D002746 ORTHO05D003037 2.0e-06 56.6 159 35.8
QL08p053342 Quercus lobata HOM05D002746 ORTHO05D003037 2.5e-06 56.2 210 30.0
EL10Ac9g22611 Beta vulgaris HOM05D002746 ORTHO05D003037 3.3e-06 55.8 99 39.4
Os02g0799100 Oryza sativa ssp. japonica HOM05D002746 ORTHO05D003037 3.3e-06 55.8 101 39.6
arahy.Tifrunner.gnm1.ann1.NH0M87 Arachis hypogaea HOM05D002746 ORTHO05D003037 4.3e-06 55.5 114 37.7
Glyma.12G080700 Glycine max HOM05D002746 ORTHO05D003037 4.3e-06 55.5 141 38.3
Prupe.2G206000 Prunus persica HOM05D002746 ORTHO05D003037 4.3e-06 55.5 113 38.1
Sed0011019 Sechium edule HOM05D002746 ORTHO05D003037 7.4e-06 54.7 126 36.5
Actinidia20430 Actinidia chinensis HOM05D002746 ORTHO05D003037 9.7e-06 54.3 92 41.3
Haze_16759 Corylus avellana HOM05D002746 ORTHO05D003037 9.7e-06 54.3 97 39.2


User provided reference genes

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