Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401030529 Solanum tuberosum HOM05D005909 ORTHO05D007481 4.2e-84 314.7 162 100.0
Solyc05g008870.3 Solanum lycopersicum HOM05D005909 ORTHO05D007481 1.3e-77 293.1 153 99.3
Sopen05g004630 Solanum pennellii HOM05D005909 ORTHO05D007481 1.3e-77 293.1 153 99.3
CAN.G610.24 Capsicum annuum HOM05D005909 ORTHO05D007481 5.1e-74 281.2 154 94.2
Nitab4.5_0002112g0090 Nicotiana tabacum HOM05D005909 ORTHO05D007481 1.1e-73 280.0 153 94.8
Nitab4.5_0000694g0120 Nicotiana tabacum HOM05D005909 ORTHO05D007481 6.2e-72 274.2 153 94.1
Peaxi162Scf00179g00534 Petunia axillaris HOM05D005909 ORTHO05D007481 9.0e-71 270.4 153 92.8
CSS0033004 Camellia sinensis var. sinensis HOM05D005909 ORTHO05D007481 8.1e-64 247.3 153 83.0
Cc11_g09670 Coffea canephora HOM05D005909 ORTHO05D007481 4.9e-61 238.0 153 80.4
vmacro10599 Vaccinium macrocarpon HOM05D005909 ORTHO05D007481 4.9e-61 238.0 153 81.0
GSVIVG01011843001 Vitis vinifera HOM05D005909 ORTHO05D007481 8.4e-61 237.3 147 83.7
Actinidia14921 Actinidia chinensis HOM05D005909 ORTHO05D007481 1.4e-60 236.5 153 79.7
SGA_v2.0_scaffold14G06904 Striga asiatica HOM05D005909 ORTHO05D007481 1.4e-60 236.5 151 78.8
Thecc.02G222000 Theobroma cacao HOM05D005909 ORTHO05D007481 1.4e-60 236.5 153 77.1
TAR622G1259 Trochodendron aralioides HOM05D005909 ORTHO05D007481 1.4e-60 236.5 153 78.4
TWI79G1572 Tripterygium wilfordii HOM05D005909 ORTHO05D007481 2.5e-60 235.7 153 79.1
Gohir.D02G171900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 3.2e-60 235.3 154 78.6
Ciclev10015519m.g Citrus clementina HOM05D005909 ORTHO05D007481 9.3e-60 233.8 153 77.1
Duzib248G1493 Durio zibethinus HOM05D005909 ORTHO05D007481 9.3e-60 233.8 161 74.5
Rhsim09G0103900 Rhododendron simsii HOM05D005909 ORTHO05D007481 9.3e-60 233.8 154 77.9
Haze_00654 Corylus avellana HOM05D005909 ORTHO05D007481 1.6e-59 233.0 153 78.4
Lj6A753G52 Lonicera japonica HOM05D005909 ORTHO05D007481 1.6e-59 233.0 155 78.1
COL.COLO4_32148 Corchorus olitorius HOM05D005909 ORTHO05D007481 2.7e-59 232.3 153 75.8
Dinv16136 Davidia involucrata HOM05D005909 ORTHO05D007481 2.7e-59 232.3 154 80.5
Eucgr.G02238 Eucalyptus grandis HOM05D005909 ORTHO05D007481 6.0e-59 231.1 147 78.9
QL01p010815 Quercus lobata HOM05D005909 ORTHO05D007481 6.0e-59 231.1 153 75.8
QL93p0145_0024 Quercus lobata HOM05D005909 ORTHO05D007481 6.0e-59 231.1 153 75.8
SalBow8G3248 Salvia bowleyana HOM05D005909 ORTHO05D007481 6.0e-59 231.1 151 76.2
MSTRG.13555 Avicennia marina HOM05D005909 ORTHO05D007481 7.9e-59 230.7 151 78.1
Actinidia16683 Actinidia chinensis HOM05D005909 ORTHO05D007481 1.3e-58 229.9 153 77.8
Lsat_1_v5_gn_3_62021 Lactuca sativa HOM05D005909 ORTHO05D007481 1.3e-58 229.9 153 75.8
Cpa.g.sc65.66 Carica papaya HOM05D005909 ORTHO05D007481 2.3e-58 229.2 153 74.5
Gorai.005G193400 Gossypium raimondii HOM05D005909 ORTHO05D007481 2.3e-58 229.2 160 74.4
Lj5g0016761 Lotus japonicus HOM05D005909 ORTHO05D007481 3.0e-58 228.8 153 72.5
HanXRQChr15g0477421 Helianthus annuus HOM05D005909 ORTHO05D007481 3.9e-58 228.4 153 75.2
Gohir.A03G148900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 6.7e-58 227.6 161 75.2
Potri.010G120200 Populus trichocarpa HOM05D005909 ORTHO05D007481 6.7e-58 227.6 153 76.5
Aqoxy3G04056 Aquilegia oxysepala HOM05D005909 ORTHO05D007481 8.7e-58 227.3 153 75.8
Atru.chr11.237 Acer truncatum HOM05D005909 ORTHO05D007481 1.1e-57 226.9 153 76.5
Nn4g23953 Nelumbo nucifera HOM05D005909 ORTHO05D007481 1.5e-57 226.5 153 75.2
Sc14g0007280 Simmondsia chinensis HOM05D005909 ORTHO05D007481 2.5e-57 225.7 153 72.5
Ca_06889_v3 Cicer arietinum L. HOM05D005909 ORTHO05D007481 3.3e-57 225.3 153 74.5
Hma1.2p1_2306F.1_g319360 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 4.3e-57 224.9 153 74.5
Hma1.2p1_1314F.1_g274990 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 5.7e-57 224.6 153 73.9
CiPaw.05G242600 Carya illinoinensis HOM05D005909 ORTHO05D007481 9.6e-57 223.8 153 73.2
Psat6g224680 Pisum sativum HOM05D005909 ORTHO05D007481 1.3e-56 223.4 153 74.5
PGR119G2457 Punica granatum HOM05D005909 ORTHO05D007481 1.6e-56 223.0 147 79.6
ECA246G0525 Erigeron canadensis HOM05D005909 ORTHO05D007481 2.1e-56 222.6 147 74.8
Prupe.1G316800 Prunus persica HOM05D005909 ORTHO05D007481 2.1e-56 222.6 147 75.5
Sabra10G0090400 Salix brachista HOM05D005909 ORTHO05D007481 2.1e-56 222.6 153 75.2
Glyma.20G120600 Glycine max HOM05D005909 ORTHO05D007481 4.8e-56 221.5 153 72.5
SalBow8G0352 Salvia bowleyana HOM05D005909 ORTHO05D007481 4.8e-56 221.5 158 72.2
TPR.G4906 Trifolium pratense HOM05D005909 ORTHO05D007481 6.3e-56 221.1 153 73.9
Medtr1g109590 Medicago truncatula HOM05D005909 ORTHO05D007481 1.1e-55 220.3 153 72.5
CDE08G1136 Ceratophyllum demersum HOM05D005909 ORTHO05D007481 2.4e-55 219.2 153 71.2
CARHR143760 Cardamine hirsuta HOM05D005909 ORTHO05D007481 4.1e-55 218.4 153 72.5
ClCG01G005900 Citrullus lanatus HOM05D005909 ORTHO05D007481 4.1e-55 218.4 153 72.5
PSO063G1187 Papaver somniferum HOM05D005909 ORTHO05D007481 4.1e-55 218.4 147 76.2
MD16G1037200 Malus domestica HOM05D005909 ORTHO05D007481 5.3e-55 218.0 147 74.8
EL10Ac6g14305 Beta vulgaris HOM05D005909 ORTHO05D007481 6.9e-55 217.6 161 66.5
RcHm_v2.0_Chr4g0434411 Rosa chinensis HOM05D005909 ORTHO05D007481 6.9e-55 217.6 147 75.5
Hund20744 Selenicereus undatus HOM05D005909 ORTHO05D007481 6.9e-55 217.6 151 68.9
PSO782G5715 Papaver somniferum HOM05D005909 ORTHO05D007481 1.2e-54 216.9 147 74.8
THA.LOC104823950 Tarenaya hassleriana HOM05D005909 ORTHO05D007481 1.2e-54 216.9 155 73.5
arahy.Tifrunner.gnm1.ann1.IU6D7D Arachis hypogaea HOM05D005909 ORTHO05D007481 1.5e-54 216.5 155 71.6
AUR62002812 Chenopodium quinoa HOM05D005909 ORTHO05D007481 1.5e-54 216.5 147 70.7
AUR62037268 Chenopodium quinoa HOM05D005909 ORTHO05D007481 1.5e-54 216.5 147 70.7
Sp2g12680 Schrenkiella parvula HOM05D005909 ORTHO05D007481 2.0e-54 216.1 153 71.2
AL5G10170 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 2.6e-54 215.7 153 72.5
BcaC06g34207 Brassica carinata HOM05D005909 ORTHO05D007481 3.4e-54 215.3 147 74.1
Oeu027686.1 Olea europaea HOM05D005909 ORTHO05D007481 4.5e-54 214.9 228 55.3
arahy.Tifrunner.gnm1.ann1.W577BF Arachis hypogaea HOM05D005909 ORTHO05D007481 7.6e-54 214.2 155 71.0
MELO3C005340.2 Cucumis melo HOM05D005909 ORTHO05D007481 7.6e-54 214.2 153 70.6
VMungo0720G1068 Vigna mungo HOM05D005909 ORTHO05D007481 7.6e-54 214.2 153 71.9
Lalb_Chr21g0308731 Lupinus albus HOM05D005909 ORTHO05D007481 1.0e-53 213.8 147 71.4
AL5G17030 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 1.7e-53 213.0 153 70.6
CsaV3_5G028790 Cucumis sativus L. HOM05D005909 ORTHO05D007481 1.7e-53 213.0 153 69.3
DCAR_007264 Daucus carota HOM05D005909 ORTHO05D007481 2.2e-53 212.6 147 74.8
AT2G01220 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 2.9e-53 212.2 153 72.5
MBI16_g44832_MAGBIO Magnolia biondii HOM05D005909 ORTHO05D007481 2.9e-53 212.2 153 70.6
FvH4_4g26720 Fragaria vesca HOM05D005909 ORTHO05D007481 5.0e-53 211.5 147 72.8
C07p31670 Brassica napus HOM05D005909 ORTHO05D007481 6.5e-53 211.1 148 73.6
BolC7t43706H Brassica oleracea HOM05D005909 ORTHO05D007481 6.5e-53 211.1 148 73.6
BraA06t27329Z Brassica rapa HOM05D005909 ORTHO05D007481 6.5e-53 211.1 154 70.8
AT3G27610 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 1.4e-52 209.9 153 69.3
A06p44550 Brassica napus HOM05D005909 ORTHO05D007481 2.5e-52 209.1 154 70.1
Cfa015837 Carpinus fangiana HOM05D005909 ORTHO05D007481 3.2e-52 208.8 153 72.5
CARHR148990 Cardamine hirsuta HOM05D005909 ORTHO05D007481 5.5e-52 208.0 153 68.6
SEGI_08541 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 9.3e-52 207.2 147 70.7
Sed0017467 Sechium edule HOM05D005909 ORTHO05D007481 1.2e-51 206.8 153 68.0
Carub.0005s0605 Capsella rubella HOM05D005909 ORTHO05D007481 2.7e-51 205.7 147 70.7
unitig_699.g19483 Utricularia gibba HOM05D005909 ORTHO05D007481 4.6e-51 204.9 135 78.5
HPP92_024514 Vanilla planifolia HOM05D005909 ORTHO05D007481 6.1e-51 204.5 147 71.4
ATR0807G244 Amborella trichopoda HOM05D005909 ORTHO05D007481 7.9e-51 204.1 147 69.4
Aa31LG2G8670 Aethionema arabicum HOM05D005909 ORTHO05D007481 1.0e-50 203.8 153 68.0
Migut.E00369 Erythranthe guttata HOM05D005909 ORTHO05D007481 1.3e-50 203.4 197 59.4
Phvul.007G032000 Phaseolus vulgaris HOM05D005909 ORTHO05D007481 2.3e-50 202.6 153 69.9
Carub.0005s0593 Capsella rubella HOM05D005909 ORTHO05D007481 5.7e-49 198.0 147 69.4
Zm00001eb360650 Zea mays HOM05D005909 ORTHO05D007481 5.7e-49 198.0 147 71.4
Os01g0691500 Oryza sativa ssp. japonica HOM05D005909 ORTHO05D007481 9.7e-49 197.2 147 70.7
Thhalv10000909m.g Eutrema salsugineum HOM05D005909 ORTHO05D007481 5.3e-47 191.4 153 66.7
Ah.03g138370 Amaranthus hybridus HOM05D005909 ORTHO05D007481 4.5e-46 188.3 124 75.8
Mapoly0100s0051 Marchantia polymorpha HOM05D005909 ORTHO05D007481 1.7e-45 186.4 151 64.9
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 2.9e-45 185.7 147 61.9
Oeu027687.1 Olea europaea HOM05D005909 ORTHO05D007481 3.8e-45 185.3 115 82.6
Pp3c12_7340 Physcomitrium patens HOM05D005909 ORTHO05D007481 6.1e-43 177.9 151 62.3
Pp3c3_16750 Physcomitrium patens HOM05D005909 ORTHO05D007481 6.1e-43 177.9 151 60.3
SMO196G0003 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 8.8e-42 174.1 154 59.1
Dinv31596 Davidia involucrata HOM05D005909 ORTHO05D007481 1.8e-34 149.8 99 78.8
FAN07G1481 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.1e-31 140.6 102 68.6
Manes.06G064900 Manihot esculenta HOM05D005909 ORTHO05D007481 1.8e-26 123.2 77 77.9
Cre06.g278116 Chlamydomonas reinhardtii HOM05D005909 ORTHO05D007481 2.3e-26 122.9 148 47.3
MCO06G004 Micromonas commoda HOM05D005909 ORTHO05D007481 6.7e-26 121.3 148 43.2
PRCOL_00006609 Prasinoderma coloniale HOM05D005909 ORTHO05D007481 7.0e-23 111.3 157 40.8
BcaC06g31323 Brassica carinata HOM05D005909 ORTHO05D007481 8.8e-18 94.4 68 72.1
arahy.Tifrunner.gnm1.ann1.XNS652 Arachis hypogaea HOM05D005909 ORTHO05D007481 3.7e-16 89.0 64 68.8
FAN12G0127 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.1e-15 87.4 62 66.1
FAN12G0185 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.4e-15 87.0 62 66.1
FAN22G0620 Fragaria x ananassa HOM05D005909 ORTHO05D007481 7.0e-15 84.7 62 64.5
SMO265G0018 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 3.5e-06 55.8 107 36.4


User provided reference genes

Program Settings