Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 8.5e-165 583.6 287 100.0
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 5.7e-161 570.9 287 97.9
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 2.8e-160 568.5 287 97.6
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 1.4e-151 539.7 287 92.0
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 1.8e-146 522.7 287 89.5
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 6.5e-141 504.2 312 81.7
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 5.9e-134 481.1 290 82.8
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 5.1e-117 424.9 291 72.9
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 8.9e-114 414.1 288 71.2
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 9.2e-111 404.1 292 72.6
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 4.7e-107 391.7 290 70.0
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 1.4e-106 390.2 282 70.2
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 1.2e-105 387.1 294 68.4
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 3.4e-105 385.6 294 67.3
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 1.4e-103 380.2 292 64.7
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 1.9e-103 379.8 281 69.4
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 7.1e-103 377.9 299 64.2
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 1.6e-102 376.7 283 67.5
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 2.1e-102 376.3 294 65.3
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 2.1e-102 376.3 327 60.9
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 3.5e-102 375.6 290 67.6
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 4.6e-102 375.2 294 63.9
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 7.8e-102 374.4 293 63.8
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 6.6e-101 371.3 272 68.0
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 2.8e-99 365.9 296 64.5
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 2.0e-97 359.8 252 71.8
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 5.8e-97 358.2 296 61.8
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 4.9e-96 355.1 299 64.9
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 6.4e-96 354.8 302 61.3
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 2.4e-95 352.8 284 62.0
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 9.3e-95 350.9 277 63.5
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 9.3e-95 350.9 295 61.7
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.2e-94 350.5 284 61.6
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 1.6e-94 350.1 285 61.8
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 1.6e-94 350.1 284 63.0
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 4.6e-94 348.6 258 66.3
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 4.6e-94 348.6 259 68.3
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 3.0e-93 345.9 277 63.5
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 3.0e-93 345.9 284 62.0
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 1.5e-92 343.6 278 61.5
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 1.5e-92 343.6 269 63.6
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 2.5e-92 342.8 312 57.7
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 5.6e-92 341.7 282 61.3
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 9.6e-92 340.9 291 62.2
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 1.6e-91 340.1 275 61.5
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 2.1e-91 339.7 292 59.9
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 2.1e-91 339.7 262 64.5
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 2.8e-91 339.3 275 60.7
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 2.8e-91 339.3 289 61.6
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 4.8e-91 338.6 315 57.5
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 1.4e-90 337.0 293 60.1
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 1.8e-90 336.7 290 60.0
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 4.0e-90 335.5 321 55.1
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 6.9e-90 334.7 279 59.1
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 2.0e-89 333.2 292 58.2
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 3.4e-89 332.4 275 60.0
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 3.4e-89 332.4 275 63.6
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 5.8e-89 331.6 254 62.2
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 7.6e-89 331.3 292 58.2
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 7.6e-89 331.3 298 58.4
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 9.9e-89 330.9 292 59.2
PGSC0003DMG402030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 1.3e-88 330.5 162 99.4
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 1.7e-88 330.1 277 59.9
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 2.2e-88 329.7 276 59.1
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 2.9e-88 329.3 272 60.3
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 4.9e-88 328.6 276 60.9
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 8.4e-88 327.8 294 59.2
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 1.1e-87 327.4 272 59.9
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.4e-87 327.0 331 52.9
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 3.2e-87 325.9 295 57.3
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 4.2e-87 325.5 292 58.2
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 9.3e-87 324.3 272 61.8
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 9.3e-87 324.3 274 57.7
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 1.6e-86 323.6 294 58.5
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 4.6e-86 322.0 284 58.8
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 1.0e-85 320.9 309 53.1
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 1.3e-85 320.5 284 58.5
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 1.3e-85 320.5 284 58.5
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 1.3e-85 320.5 284 58.5
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 1.3e-85 320.5 284 58.5
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 2.3e-85 319.7 276 58.0
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 2.3e-85 319.7 258 67.1
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 5.1e-85 318.5 292 56.5
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 1.9e-84 316.6 239 61.5
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 5.6e-84 315.1 227 67.8
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 8.1e-83 311.2 345 48.4
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 8.1e-83 311.2 281 56.9
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 4.0e-82 308.9 270 59.3
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 6.9e-82 308.1 287 58.5
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 2.6e-81 306.2 271 58.7
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 2.6e-81 306.2 271 58.7
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 2.6e-81 306.2 271 58.7
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 5.8e-81 305.1 289 57.4
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 1.9e-79 300.1 259 56.8
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 1.6e-78 297.0 228 68.4
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 1.3e-77 293.9 220 69.1
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 1.3e-77 293.9 284 56.0
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.8e-77 293.5 281 55.5
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 1.5e-76 290.4 272 54.0
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 4.3e-76 288.9 253 58.5
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 1.3e-75 287.3 298 54.0
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 3.7e-75 285.8 451 40.6
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 2.0e-73 280.0 303 49.8
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 2.1e-70 270.0 273 54.2
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 3.0e-69 266.2 237 61.2
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 1.5e-68 263.8 243 58.8
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 6.9e-66 255.0 198 64.1
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 5.9e-65 251.9 271 49.4
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 5.9e-65 251.9 214 58.9
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 7.4e-60 235.0 239 53.1
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 4.8e-59 232.3 230 50.0
SGA_v2.0_scaffold203G41537 Striga asiatica HOM05D005444 ORTHO05D006773 4.5e-57 225.7 176 65.3
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 1.0e-56 224.6 228 50.9
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 2.7e-54 216.5 189 56.6
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 3.7e-43 179.5 215 49.3
Aqoxy1G00926 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 3.1e-42 176.4 153 58.2
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 7.0e-42 175.3 127 68.5
CARHR285770 Cardamine hirsuta HOM05D005444 ORTHO05D006773 2.6e-41 173.3 164 51.8
Zm00001eb355820 Zea mays HOM05D005444 ORTHO05D006773 7.7e-41 171.8 149 54.4
DCAR_005353 Daucus carota HOM05D005444 ORTHO05D006773 1.1e-39 167.9 103 73.8
Nn2g13370 Nelumbo nucifera HOM05D005444 ORTHO05D006773 7.0e-34 148.7 89 77.5
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 2.0e-33 147.1 234 36.8
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 2.7e-33 146.7 111 65.8
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 1.1e-31 141.4 115 61.7
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 5.5e-31 139.0 73 83.6
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 3.6e-30 136.3 73 80.8
unitig_747.g22037 Utricularia gibba HOM05D005444 ORTHO05D006773 5.4e-26 122.5 113 52.2
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 1.3e-24 117.9 83 67.5
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 1.3e-24 117.9 83 67.5
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 1.3e-24 117.9 67 83.6
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 1.7e-24 117.5 71 76.1
TPR.G27554 Trifolium pratense HOM05D005444 ORTHO05D006773 2.4e-18 97.1 71 62.0
Medtr4g064030 Medicago truncatula HOM05D005444 ORTHO05D006773 2.9e-16 90.1 134 39.6
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 6.6e-16 89.0 74 59.5
TAR636G2897 Trochodendron aralioides HOM05D005444 ORTHO05D006773 1.2e-14 84.7 80 55.0
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 1.4e-13 81.3 42 81.0
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 2.3e-13 80.5 72 56.9
TPR.G27777 Trifolium pratense HOM05D005444 ORTHO05D006773 2.3e-13 80.5 57 57.9
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 3.1e-13 80.1 42 83.3
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 9.8e-12 75.1 46 71.7
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 2.2e-11 73.9 191 28.3
COL.COLO4_35627 Corchorus olitorius HOM05D005444 ORTHO05D001950 5.4e-10 69.3 84 48.8
BcaB01g04587 Brassica carinata HOM05D000021 ORTHO05D000010 2.0e-09 67.4 37 81.1
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 1.1e-07 61.6 184 31.0


User provided reference genes

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