Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401029058 Solanum tuberosum HOM05D005560 ORTHO05D006862 8.2e-58 226.9 117 100.0
Solyc01g058280.4 Solanum lycopersicum HOM05D005560 ORTHO05D006862 1.2e-53 213.0 114 94.7
Sopen01g023770 Solanum pennellii HOM05D005560 ORTHO05D006862 3.6e-53 211.5 114 93.9
Nitab4.5_0012592g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 6.1e-53 210.7 114 93.0
CAN.G1860.1 Capsicum annuum HOM05D005560 ORTHO05D006862 6.7e-52 207.2 117 90.6
CAN.G938.2 Capsicum annuum HOM05D005560 ORTHO05D006862 1.2e-51 206.5 114 92.1
Peaxi162Scf00228g00733 Petunia axillaris HOM05D005560 ORTHO05D006862 9.7e-51 203.4 114 91.2
Nitab4.5_0002561g0080 Nicotiana tabacum HOM05D005560 ORTHO05D006862 4.2e-46 188.0 104 92.3
Dinv15139 Davidia involucrata HOM05D005560 ORTHO05D006862 2.3e-44 182.2 114 81.6
TAR371G1140 Trochodendron aralioides HOM05D005560 ORTHO05D006862 6.3e-42 174.1 114 75.4
Dinv44258 Davidia involucrata HOM05D005560 ORTHO05D006862 1.4e-41 172.9 114 77.2
Manes.11G109500 Manihot esculenta HOM05D005560 ORTHO05D006862 5.4e-41 171.0 112 75.0
Nn3g21792 Nelumbo nucifera HOM05D005560 ORTHO05D006862 9.1e-41 170.2 114 71.1
Lj6E694T0 Lonicera japonica HOM05D005560 ORTHO05D006862 3.5e-40 168.3 114 74.6
Manes.11G060400 Manihot esculenta HOM05D005560 ORTHO05D006862 3.5e-40 168.3 112 74.1
QL06p012974 Quercus lobata HOM05D005560 ORTHO05D006862 5.9e-40 167.5 114 71.9
Potri.008G102200 Populus trichocarpa HOM05D005560 ORTHO05D006862 1.0e-39 166.8 114 73.7
Sc13g0007210 Simmondsia chinensis HOM05D005560 ORTHO05D006862 1.0e-39 166.8 114 73.7
Cc06_g13180 Coffea canephora HOM05D005560 ORTHO05D006862 1.3e-39 166.4 114 72.8
COL.COLO4_34571 Corchorus olitorius HOM05D005560 ORTHO05D006862 1.3e-39 166.4 114 72.8
vmacro09713 Vaccinium macrocarpon HOM05D005560 ORTHO05D006862 1.3e-39 166.4 114 77.2
Medtr2g033590 Medicago truncatula HOM05D005560 ORTHO05D006862 2.9e-39 165.2 114 71.9
CSS0010593 Camellia sinensis var. sinensis HOM05D005560 ORTHO05D006862 3.8e-39 164.9 114 71.9
Medtr2g097970 Medicago truncatula HOM05D005560 ORTHO05D006862 3.8e-39 164.9 114 70.2
Atru.chr4.3063 Acer truncatum HOM05D005560 ORTHO05D006862 6.6e-39 164.1 114 72.8
Lj6g0013029 Lotus japonicus HOM05D005560 ORTHO05D006862 6.6e-39 164.1 114 70.2
arahy.Tifrunner.gnm1.ann1.JWH7Q7 Arachis hypogaea HOM05D005560 ORTHO05D006862 8.6e-39 163.7 116 69.8
MELO3C015305.2 Cucumis melo HOM05D005560 ORTHO05D006862 1.5e-38 162.9 115 73.0
Gohir.A02G055900 Gossypium hirsutum HOM05D005560 ORTHO05D006862 1.9e-38 162.5 114 71.9
Gohir.D02G061100 Gossypium hirsutum HOM05D005560 ORTHO05D006862 1.9e-38 162.5 114 71.9
Lalb_Chr18g0058561 Lupinus albus HOM05D005560 ORTHO05D006862 1.9e-38 162.5 114 68.4
CANSAT78G0499 Cannabis sativa HOM05D005560 ORTHO05D006862 2.5e-38 162.2 114 72.8
CAN.G484.71 Capsicum annuum HOM05D005560 ORTHO05D006862 2.5e-38 162.2 114 72.8
Lalb_Chr20g0120691 Lupinus albus HOM05D005560 ORTHO05D006862 3.3e-38 161.8 114 68.4
Duzib212G0918 Durio zibethinus HOM05D005560 ORTHO05D006862 5.5e-38 161.0 114 71.1
Prupe.1G113300 Prunus persica HOM05D005560 ORTHO05D006862 7.2e-38 160.6 114 70.2
Ah.13g071490 Amaranthus hybridus HOM05D005560 ORTHO05D006862 1.2e-37 159.8 105 77.1
Ca_00962_v3 Cicer arietinum L. HOM05D005560 ORTHO05D006862 1.2e-37 159.8 114 68.4
Glyma.15G138200 Glycine max HOM05D005560 ORTHO05D006862 1.2e-37 159.8 114 69.3
TWI09G0868 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 2.1e-37 159.1 114 70.2
Sabra10G0114700 Salix brachista HOM05D005560 ORTHO05D006862 2.8e-37 158.7 111 73.9
Ciclev10006078m.g Citrus clementina HOM05D005560 ORTHO05D006862 3.6e-37 158.3 113 72.6
CDE06G0356 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 4.7e-37 157.9 114 71.9
FAN07G2916 Fragaria x ananassa HOM05D005560 ORTHO05D006862 4.7e-37 157.9 114 66.7
Sed0008051 Sechium edule HOM05D005560 ORTHO05D006862 8.0e-37 157.1 114 71.1
Gohir.A10G174500 Gossypium hirsutum HOM05D005560 ORTHO05D006862 1.0e-36 156.8 114 67.5
TPR.G33875 Trifolium pratense HOM05D005560 ORTHO05D006862 1.0e-36 156.8 114 68.4
Hma1.2p1_1400F.1_g280950 Hydrangea macrophylla HOM05D005560 ORTHO05D006862 1.4e-36 156.4 104 76.9
FAN12G4019 Fragaria x ananassa HOM05D005560 ORTHO05D006862 1.8e-36 156.0 114 65.8
Oeu048287.1 Olea europaea HOM05D005560 ORTHO05D006862 3.0e-36 155.2 96 76.0
DCAR_026978 Daucus carota HOM05D005560 ORTHO05D006862 5.2e-36 154.5 104 77.9
THA.LOC104827102 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 5.2e-36 154.5 114 64.9
MSTRG.3846 Avicennia marina HOM05D005560 ORTHO05D006862 6.8e-36 154.1 114 65.8
ECA246G4816 Erigeron canadensis HOM05D005560 ORTHO05D006862 6.8e-36 154.1 114 70.2
TPR.G30159 Trifolium pratense HOM05D005560 ORTHO05D006862 6.8e-36 154.1 114 67.5
GSVIVG01034955001 Vitis vinifera HOM05D001281 ORTHO05D001139 6.8e-36 154.1 114 68.4
CsaV3_1G038810 Cucumis sativus L. HOM05D005560 ORTHO05D006862 8.9e-36 153.7 114 70.2
PSO782G0665 Papaver somniferum HOM05D005560 ORTHO05D006862 8.9e-36 153.7 105 70.5
Potri.010G148600 Populus trichocarpa HOM05D005560 ORTHO05D006862 8.9e-36 153.7 114 69.3
EL10Ac3g05546 Beta vulgaris HOM05D005560 ORTHO05D006862 1.2e-35 153.3 113 71.7
PSO063G2615 Papaver somniferum HOM05D005560 ORTHO05D006862 1.2e-35 153.3 105 69.5
RcHm_v2.0_Chr4g0425981 Rosa chinensis HOM05D005560 ORTHO05D006862 2.0e-35 152.5 114 65.8
Glyma.17G036700 Glycine max HOM05D005560 ORTHO05D006862 2.6e-35 152.1 114 67.5
VMungo0540G1255 Vigna mungo HOM05D005560 ORTHO05D006862 3.4e-35 151.8 109 68.8
Nn8g38759 Nelumbo nucifera HOM05D005560 ORTHO05D006862 5.7e-35 151.0 108 68.5
Cpa.g.sc9.16 Carica papaya HOM05D005560 ORTHO05D006862 7.5e-35 150.6 114 64.9
FvH4_4g20620 Fragaria vesca HOM05D005560 ORTHO05D006862 7.5e-35 150.6 114 64.0
Phvul.006G120000 Phaseolus vulgaris HOM05D005560 ORTHO05D006862 7.5e-35 150.6 109 67.9
CiPaw.01G134900 Carya illinoinensis HOM05D005560 ORTHO05D006862 9.8e-35 150.2 114 66.7
SGA_v2.0_scaffold157G37338 Striga asiatica HOM05D005560 ORTHO05D006862 9.8e-35 150.2 111 67.6
Migut.G00039 Erythranthe guttata HOM05D005560 ORTHO05D006862 1.7e-34 149.4 102 68.6
MD13G1149300 Malus domestica HOM05D005560 ORTHO05D006862 2.2e-34 149.1 105 69.5
Aqoxy5G02923 Aquilegia oxysepala HOM05D005560 ORTHO05D006862 2.8e-34 148.7 108 69.4
Gorai.005G068700 Gossypium raimondii HOM05D005560 ORTHO05D006862 2.8e-34 148.7 139 59.0
MD16G1149600 Malus domestica HOM05D005560 ORTHO05D006862 2.8e-34 148.7 105 68.6
Hund11992 Selenicereus undatus HOM05D005560 ORTHO05D006862 6.3e-34 147.5 102 74.5
HanXRQChr01g0022341 Helianthus annuus HOM05D005560 ORTHO05D006862 1.8e-33 146.0 94 74.5
SalBow8G4800 Salvia bowleyana HOM05D005560 ORTHO05D006862 5.4e-33 144.4 117 62.4
Gohir.D10G181000 Gossypium hirsutum HOM05D005560 ORTHO05D006862 7.0e-33 144.1 114 64.0
CiPaw.02G072600 Carya illinoinensis HOM05D005560 ORTHO05D006862 9.2e-33 143.7 107 67.3
PGR004G2070 Punica granatum HOM05D005560 ORTHO05D006862 9.2e-33 143.7 114 67.5
SEGI_13216 Sequoiadendron giganteum HOM05D005560 ORTHO05D006862 9.2e-33 143.7 109 61.5
BraA09t36124Z Brassica rapa HOM05D005560 ORTHO05D006862 1.2e-32 143.3 109 67.0
CARHR287970 Cardamine hirsuta HOM05D005560 ORTHO05D006862 1.2e-32 143.3 107 67.3
Haze_01347 Corylus avellana HOM05D005560 ORTHO05D006862 1.2e-32 143.3 104 69.2
Glyma.09G033400 Glycine max HOM05D005560 ORTHO05D006862 1.2e-32 143.3 114 65.8
Aa31LG11G8340 Aethionema arabicum HOM05D005560 ORTHO05D006862 2.7e-32 142.1 106 64.2
arahy.Tifrunner.gnm1.ann1.K4HITJ Arachis hypogaea HOM05D005560 ORTHO05D006862 2.7e-32 142.1 104 68.3
Thhalv10005160m.g Eutrema salsugineum HOM05D005560 ORTHO05D006862 2.7e-32 142.1 107 67.3
Thecc.04G305600 Theobroma cacao HOM05D005560 ORTHO05D006862 3.5e-32 141.7 110 67.3
Sp2g19850 Schrenkiella parvula HOM05D005560 ORTHO05D006862 4.5e-32 141.4 107 67.3
BolC7t44528H Brassica oleracea HOM05D005560 ORTHO05D006862 7.8e-32 140.6 110 65.5
AL8G23330 Arabidopsis lyrata HOM05D005560 ORTHO05D006862 1.0e-31 140.2 107 66.4
BcaC04g23733 Brassica carinata HOM05D005560 ORTHO05D006862 1.0e-31 140.2 107 66.4
MBI10_g06741_MAGBIO Magnolia biondii HOM05D005560 ORTHO05D006862 1.0e-31 140.2 104 63.5
Carub.0008s0942 Capsella rubella HOM05D005560 ORTHO05D006862 1.3e-31 139.8 107 66.4
BcaB04g19617 Brassica carinata HOM05D005560 ORTHO05D006862 1.7e-31 139.4 107 66.4
A09p04870 Brassica napus HOM05D005560 ORTHO05D006862 1.7e-31 139.4 107 66.4
C09p05260 Brassica napus HOM05D005560 ORTHO05D006862 1.7e-31 139.4 107 66.4
BolC9t53453H Brassica oleracea HOM05D005560 ORTHO05D006862 1.7e-31 139.4 107 66.4
ClCG03G017390 Citrullus lanatus HOM05D005560 ORTHO05D006862 1.7e-31 139.4 104 71.2
Lsat_1_v5_gn_6_116081 Lactuca sativa HOM05D005560 ORTHO05D006862 2.3e-31 139.0 104 70.2
QL02p001630 Quercus lobata HOM05D005560 ORTHO05D006862 2.3e-31 139.0 91 73.6
Sed0013449 Sechium edule HOM05D005560 ORTHO05D006862 2.9e-31 138.7 104 70.2
THA.LOC104818873 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 3.8e-31 138.3 114 58.8
HPP92_015326 Vanilla planifolia HOM05D005560 ORTHO05D006862 3.8e-31 138.3 107 63.6
AT5G49540 Arabidopsis thaliana HOM05D005560 ORTHO05D006862 5.0e-31 137.9 107 65.4
Gorai.011G202500 Gossypium raimondii HOM05D005560 ORTHO05D006862 5.0e-31 137.9 114 62.3
A06p38280 Brassica napus HOM05D005560 ORTHO05D006862 8.6e-31 137.1 108 64.8
AUR62016242 Chenopodium quinoa HOM05D005560 ORTHO05D006862 1.9e-30 136.0 100 71.0
Psat0s5068g0040 Pisum sativum HOM05D005560 ORTHO05D006862 1.9e-30 136.0 104 64.4
ATR0598G271 Amborella trichopoda HOM05D005560 ORTHO05D006862 9.5e-30 133.7 105 65.7
TWI53G0383 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 2.1e-29 132.5 104 63.5
Lsat_1_v5_gn_3_139661 Lactuca sativa HOM05D005560 ORTHO05D006862 2.8e-29 132.1 99 71.7
CDE07G1301 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 3.6e-29 131.7 82 80.5
Migut.O00585 Erythranthe guttata HOM05D005560 ORTHO05D006862 3.6e-29 131.7 96 65.6
unitig_37.g12416 Utricularia gibba HOM05D005560 ORTHO05D007484 1.8e-28 129.4 97 62.9
Zm00001eb295100 Zea mays HOM05D005560 ORTHO05D006862 1.8e-28 129.4 96 61.5
HanXRQChr10g0310551 Helianthus annuus HOM05D005560 ORTHO05D006862 2.3e-28 129.0 82 76.8
Zm00001eb343110 Zea mays HOM05D005560 ORTHO05D006862 6.8e-28 127.5 96 60.4
Eucgr.F02752 Eucalyptus grandis HOM05D005560 ORTHO05D006862 8.9e-28 127.1 131 58.0
Mapoly0008s0274 Marchantia polymorpha HOM05D005560 ORTHO05D006862 2.2e-26 122.5 103 53.4
Nitab4.5_0008521g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 6.4e-26 120.9 70 87.1
BraA06t26743Z Brassica rapa HOM05D005560 ORTHO05D006862 5.4e-25 117.9 103 60.2
AagrBONN_evm.TU.Sc2ySwM_362.2649 Anthoceros agrestis HOM05D005560 ORTHO05D006862 9.2e-25 117.1 102 53.9
AUR62032779 Chenopodium quinoa HOM05D005560 ORTHO05D006862 7.8e-24 114.0 70 84.3
Oeu052158.1 Olea europaea HOM05D005560 ORTHO05D006862 3.3e-22 108.6 109 56.0
SMO117G0178 Selaginella moellendorffii HOM05D005560 ORTHO05D006862 4.7e-21 104.8 95 51.6
AagrBONN_evm.TU.Sc2ySwM_340.65 Anthoceros agrestis HOM05D005560 ORTHO05D006862 1.1e-20 103.6 86 57.0
arahy.Tifrunner.gnm1.ann1.CCFX3U Arachis hypogaea HOM05D001281 ORTHO05D001139 9.8e-19 97.1 103 52.4
CBR_g22909 Chara braunii HOM05D005560 ORTHO05D006862 6.4e-18 94.4 88 48.9
Nn8g41304 Nelumbo nucifera HOM05D005560 ORTHO05D006862 2.4e-17 92.4 60 73.3
MD01G1183100 Malus domestica HOM05D005560 ORTHO05D006862 7.8e-16 87.4 66 65.2
PRCOL_00001634 Prasinoderma coloniale HOM05D005560 ORTHO05D006862 2.1e-13 79.3 104 43.3
Nn1g07816 Nelumbo nucifera HOM05D005560 ORTHO05D006862 4.7e-13 78.2 66 59.1
arahy.Tifrunner.gnm1.ann1.NI9QGM Arachis hypogaea HOM05D005560 ORTHO05D006862 1.3e-10 70.1 81 49.4
TWI73G0491 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 2.9e-10 68.9 52 61.5
MCO06G009 Micromonas commoda HOM05D005560 ORTHO05D006862 5.1e-07 58.2 101 35.6
Cre14.g614250 Chlamydomonas reinhardtii HOM05D005560 ORTHO05D006862 7.3e-06 54.3 94 33.0


User provided reference genes

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