Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 1.7e-70 269.2 134 100.0
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 1.7e-70 269.2 134 100.0
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 1.5e-66 256.1 134 92.5
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 9.4e-66 253.4 130 96.2
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 2.1e-65 252.3 130 94.6
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.4e-64 249.6 134 91.8
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.8e-64 249.2 134 91.0
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 1.8e-64 249.2 134 92.5
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 8.8e-64 246.9 130 93.8
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 3.8e-59 231.5 134 83.6
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 6.5e-59 230.7 134 82.8
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 8.5e-59 230.3 128 85.2
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 8.5e-59 230.3 131 84.0
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 1.5e-58 229.6 130 83.1
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 1.5e-58 229.6 130 83.8
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 4.2e-58 228.0 134 82.1
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 4.2e-58 228.0 135 83.0
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 4.2e-58 228.0 129 82.9
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 5.5e-58 227.6 129 83.7
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 9.4e-58 226.9 134 82.1
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 1.2e-57 226.5 128 83.6
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 2.7e-57 225.3 124 84.7
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 2.7e-57 225.3 128 83.6
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 3.6e-57 224.9 129 83.7
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 4.7e-57 224.6 134 80.6
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 2.3e-56 222.2 124 83.9
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 2.3e-56 222.2 124 83.9
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 3.0e-56 221.9 124 83.9
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 4.0e-56 221.5 126 84.9
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 1.2e-55 219.9 126 83.3
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 1.5e-55 219.5 124 82.3
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 1.5e-55 219.5 130 80.0
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 1.5e-55 219.5 126 84.1
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 2.0e-55 219.2 126 83.3
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 2.0e-55 219.2 124 82.3
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 3.4e-55 218.4 129 80.6
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 5.7e-55 217.6 124 83.9
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 5.7e-55 217.6 127 81.1
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 9.8e-55 216.9 128 79.7
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.3e-54 216.5 124 83.1
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.3e-54 216.5 129 79.8
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 1.3e-54 216.5 129 79.8
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 1.7e-54 216.1 124 79.8
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 2.2e-54 215.7 129 79.8
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 2.2e-54 215.7 124 81.5
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 2.2e-54 215.7 124 81.5
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 2.8e-54 215.3 124 80.6
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 2.8e-54 215.3 124 80.6
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 3.7e-54 214.9 129 80.6
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 4.8e-54 214.5 131 77.9
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 6.3e-54 214.2 129 79.8
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 8.3e-54 213.8 130 76.9
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 8.3e-54 213.8 124 81.5
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 1.1e-53 213.4 124 78.2
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.1e-53 213.4 129 79.1
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 1.4e-53 213.0 129 79.8
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 1.4e-53 213.0 124 79.0
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 1.8e-53 212.6 177 63.8
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 1.8e-53 212.6 129 79.1
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 3.1e-53 211.8 118 83.1
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 3.1e-53 211.8 124 79.8
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 4.1e-53 211.5 118 83.1
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 4.1e-53 211.5 130 75.4
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 9.1e-53 210.3 124 79.8
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 9.1e-53 210.3 124 79.8
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 2.0e-52 209.1 124 77.4
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 2.0e-52 209.1 124 77.4
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.7e-52 208.8 124 79.0
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.7e-52 208.8 124 79.0
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 2.7e-52 208.8 127 78.0
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 2.7e-52 208.8 124 76.6
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 5.9e-52 207.6 124 79.0
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 5.9e-52 207.6 124 75.8
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 5.9e-52 207.6 124 78.2
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 1.0e-51 206.8 126 75.4
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 1.3e-51 206.5 124 76.6
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 1.7e-51 206.1 124 77.4
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 2.2e-51 205.7 124 79.0
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.2e-51 205.7 124 78.2
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 2.2e-51 205.7 124 76.6
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 2.9e-51 205.3 124 77.4
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 3.8e-51 204.9 130 74.6
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 3.8e-51 204.9 124 75.8
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 3.8e-51 204.9 124 76.6
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 8.5e-51 203.8 124 78.2
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 8.5e-51 203.8 124 75.8
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 1.9e-50 202.6 124 77.4
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 2.5e-50 202.2 126 74.6
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 3.2e-50 201.8 124 75.8
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 3.6e-49 198.4 129 72.1
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 6.1e-49 197.6 125 75.2
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 1.4e-48 196.4 126 73.0
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 1.8e-48 196.1 126 73.0
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 1.8e-48 196.1 126 73.0
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 2.3e-48 195.7 126 73.0
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 3.0e-48 195.3 126 73.0
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 3.0e-48 195.3 129 70.5
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 4.0e-48 194.9 130 70.8
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 5.2e-48 194.5 126 73.0
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 5.2e-48 194.5 126 73.0
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 5.2e-48 194.5 126 73.0
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 5.2e-48 194.5 124 74.2
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 6.8e-48 194.1 124 76.6
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 1.2e-47 193.4 126 72.2
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 1.2e-47 193.4 126 72.2
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 1.2e-47 193.4 126 72.2
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 1.5e-47 193.0 128 74.2
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 2.2e-46 189.1 130 73.1
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 2.8e-46 188.7 127 71.7
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 1.1e-45 186.8 129 69.0
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 4.1e-45 184.9 109 76.1
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 4.5e-44 181.4 103 82.5
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 8.6e-43 177.2 129 70.5
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 7.2e-42 174.1 112 74.1
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 3.4e-39 165.2 86 97.7
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 1.6e-36 156.4 82 85.4
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 5.9e-36 154.5 82 87.8
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 5.0e-35 151.4 112 65.2
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 9.5e-34 147.1 84 82.1
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 3.5e-28 128.6 80 78.8
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 5.0e-27 124.8 88 65.9
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 1.5e-26 123.2 102 57.8
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 7.3e-26 120.9 89 64.0
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 6.8e-24 114.4 61 88.5
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 1.2e-23 113.6 129 51.9
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 3.7e-22 108.6 57 91.2
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 7.1e-21 104.4 82 59.8
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.7e-19 99.8 69 69.6
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.5e-18 96.7 69 68.1
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 5.8e-15 84.7 81 49.4
Nitab4.5_0011266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 2.9e-14 82.4 60 80.0
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 8.4e-14 80.9 114 47.4
Nitab4.5_0005166g0030 Nicotiana tabacum HOM05D001081 ORTHO05D025899 3.5e-12 75.5 60 73.3
Nitab4.5_0008435g0040 Nicotiana tabacum HOM05D002996 ORTHO05D025899 6.0e-12 74.7 60 73.3
Nitab4.5_0026266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 6.0e-12 74.7 60 75.0
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 1.0e-11 73.9 48 70.8
Actinidia15449 Actinidia chinensis HOM05D001081 ORTHO05D007101 4.3e-10 68.6 36 88.9
DCAR_016735 Daucus carota HOM05D001081 ORTHO05D007101 9.6e-10 67.4 59 49.2
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 9.6e-10 67.4 40 72.5


User provided reference genes

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