Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401028588 Solanum tuberosum HOM05D006048 ORTHO05D007642 0.0e+00 2072.4 1091 100.0
Sopen01g042410 Solanum pennellii HOM05D006048 ORTHO05D007642 0.0e+00 1904.0 1090 92.2
Solyc01g098870.3 Solanum lycopersicum HOM05D006048 ORTHO05D007642 0.0e+00 1864.4 1090 90.3
CAN.G1077.18 Capsicum annuum HOM05D006048 ORTHO05D007642 0.0e+00 1569.3 1094 78.0
Nitab4.5_0008677g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 0.0e+00 1315.4 1143 67.3
Peaxi162Scf00037g00236 Petunia axillaris HOM05D006048 ORTHO05D007642 0.0e+00 1232.2 1136 65.7
Nitab4.5_0005388g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 0.0e+00 1221.8 1135 63.8
Actinidia05707 Actinidia chinensis HOM05D006048 ORTHO05D007642 4.2e-140 503.4 1108 35.4
Oeu017488.1 Olea europaea HOM05D006048 ORTHO05D007642 1.9e-132 478.0 648 45.5
Actinidia23630 Actinidia chinensis HOM05D006048 ORTHO05D007642 3.3e-132 477.2 1102 35.1
Hma1.2p1_0928F.1_g237870 Hydrangea macrophylla HOM05D006048 ORTHO05D007642 1.1e-127 462.2 1105 34.8
CSS0040601 Camellia sinensis var. sinensis HOM05D006048 ORTHO05D007642 1.8e-122 444.9 616 43.3
Migut.B01039 Erythranthe guttata HOM05D006048 ORTHO05D007642 7.3e-116 422.9 825 38.5
Cc02_g33600 Coffea canephora HOM05D006048 ORTHO05D007642 2.7e-110 404.4 857 37.0
Haze_04204 Corylus avellana HOM05D006048 ORTHO05D007642 2.7e-110 404.4 1120 31.8
Rhsim07G0182400 Rhododendron simsii HOM05D006048 ORTHO05D007642 1.1e-108 399.1 1208 31.5
Cfa006579 Carpinus fangiana HOM05D006048 ORTHO05D007642 6.2e-107 393.3 1125 32.1
Dinv23949 Davidia involucrata HOM05D006048 ORTHO05D007642 8.1e-107 392.9 1111 30.9
MD12G1220300 Malus domestica HOM05D006048 ORTHO05D007642 3.1e-106 391.0 1125 34.8
Potri.013G023600 Populus trichocarpa HOM05D006048 ORTHO05D007642 8.9e-106 389.4 1118 32.2
Ciclev10000202m.g Citrus clementina HOM05D006048 ORTHO05D007642 4.4e-105 387.1 1118 32.5
QL03p006882 Quercus lobata HOM05D006048 ORTHO05D007642 3.2e-103 380.9 1094 32.6
SalBow8G1366 Salvia bowleyana HOM05D006048 ORTHO05D007642 2.7e-102 377.9 1098 31.1
MSTRG.20430 Avicennia marina HOM05D006048 ORTHO05D007642 4.6e-102 377.1 1230 31.7
Manes.09G166100 Manihot esculenta HOM05D006048 ORTHO05D007642 4.6e-102 377.1 1140 31.4
Duzib128G0698 Durio zibethinus HOM05D006048 ORTHO05D007642 1.0e-101 375.9 1110 31.7
Prupe.6G327100 Prunus persica HOM05D006048 ORTHO05D007642 1.3e-101 375.6 1121 32.1
RcHm_v2.0_Chr3g0454571 Rosa chinensis HOM05D006048 ORTHO05D007642 1.3e-101 375.6 692 38.6
Sabra13G0025400 Salix brachista HOM05D006048 ORTHO05D007642 2.3e-101 374.8 1126 31.3
GSVIVG01000040001 Vitis vinifera HOM05D006048 ORTHO05D007642 2.3e-101 374.8 1132 32.4
TWI56G0330 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 6.6e-101 373.2 1139 30.9
COL.COLO4_13482 Corchorus olitorius HOM05D006048 ORTHO05D007642 1.5e-100 372.1 632 37.8
Potri.005G034100 Populus trichocarpa HOM05D006048 ORTHO05D007642 1.9e-100 371.7 1131 32.1
FAN14G2795 Fragaria x ananassa HOM05D006048 ORTHO05D007642 9.6e-100 369.4 1116 32.8
FvH4_6g05680 Fragaria vesca HOM05D006048 ORTHO05D007642 1.6e-99 368.6 1108 32.3
MD04G1206500 Malus domestica HOM05D006048 ORTHO05D007642 1.6e-99 368.6 1129 33.2
FAN14G2991 Fragaria x ananassa HOM05D006048 ORTHO05D007642 3.6e-99 367.5 1127 32.6
Sabra05G0036000 Salix brachista HOM05D006048 ORTHO05D007642 4.8e-99 367.1 1121 31.0
FAN02G2040 Fragaria x ananassa HOM05D006048 ORTHO05D007642 6.2e-99 366.7 1115 33.2
FAN09G2502 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.4e-98 365.5 1138 33.0
FAN05G1530 Fragaria x ananassa HOM05D006048 ORTHO05D007642 4.4e-97 360.5 1123 32.0
Thecc.05G304700 Theobroma cacao HOM05D006048 ORTHO05D007642 1.4e-95 355.5 1107 30.5
TWI12G1173 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 5.6e-92 343.6 1129 29.4
Gohir.D11G274400 Gossypium hirsutum HOM05D006048 ORTHO05D007642 1.1e-90 339.3 1110 30.9
CsaV3_2G005180 Cucumis sativus L. HOM05D006048 ORTHO05D007642 1.4e-90 339.0 1111 31.7
TAR636G0181 Trochodendron aralioides HOM05D006048 ORTHO05D007642 2.0e-89 335.1 824 33.1
THA.LOC104820894 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 4.5e-89 334.0 1098 31.0
Gohir.A11G264200 Gossypium hirsutum HOM05D006048 ORTHO05D007642 7.6e-89 333.2 1112 30.9
Gorai.007G296200 Gossypium raimondii HOM05D006048 ORTHO05D007642 1.4e-87 328.9 1107 30.3
MELO3C004275.2 Cucumis melo HOM05D006048 ORTHO05D007642 3.2e-87 327.8 1111 32.0
FAN05G2734 Fragaria x ananassa HOM05D006048 ORTHO05D007642 3.0e-85 321.2 1096 31.4
ECA238G0871 Erigeron canadensis HOM05D006048 ORTHO05D007642 6.7e-85 320.1 815 33.0
ClCG02G015880 Citrullus lanatus HOM05D006048 ORTHO05D007642 1.1e-84 319.3 1129 31.3
vmacro05021 Vaccinium macrocarpon HOM05D006048 ORTHO05D007642 1.1e-84 319.3 1126 31.2
PGR031G0290 Punica granatum HOM05D006048 ORTHO05D007642 7.4e-84 316.6 1166 29.2
SGA_v2.0_scaffold172G38965 Striga asiatica HOM05D006048 ORTHO05D007642 4.8e-83 313.9 1218 30.8
Nn4g26237 Nelumbo nucifera HOM05D006048 ORTHO05D007642 8.1e-83 313.2 675 33.9
Sc06g0003370 Simmondsia chinensis HOM05D006048 ORTHO05D007642 2.0e-81 308.5 1080 30.8
Sed0020620 Sechium edule HOM05D006048 ORTHO05D007642 3.8e-80 304.3 1099 30.4
EL10Ac4g09343 Beta vulgaris HOM05D006048 ORTHO05D007642 2.5e-79 301.6 516 38.2
THA.LOC104805873 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 4.2e-79 300.8 1111 29.3
Lj5g0003009 Lotus japonicus HOM05D006048 ORTHO05D007642 5.5e-79 300.4 525 34.9
Lalb_Chr21g0310721 Lupinus albus HOM05D006048 ORTHO05D007642 4.6e-78 297.4 734 32.6
Glyma.10G155100 Glycine max HOM05D006048 ORTHO05D007642 2.5e-76 291.6 748 33.2
HanXRQChr15g0463081 Helianthus annuus HOM05D006048 ORTHO05D007642 6.2e-75 287.0 721 33.4
AUR62000837 Chenopodium quinoa HOM05D006048 ORTHO05D007642 8.2e-75 286.6 647 32.6
Medtr1g082840 Medicago truncatula HOM05D006048 ORTHO05D007642 1.1e-74 286.2 1152 27.1
Hund07062 Selenicereus undatus HOM05D006048 ORTHO05D007642 2.0e-73 282.0 702 32.6
Cpa.g.sc48.39 Carica papaya HOM05D006048 ORTHO05D007642 3.4e-73 281.2 1129 29.8
AUR62005136 Chenopodium quinoa HOM05D006048 ORTHO05D007642 5.8e-73 280.4 624 33.3
Glyma.20G233200 Glycine max HOM05D006048 ORTHO05D007642 1.4e-71 275.8 1100 26.7
MBI19_g16658_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 1.9e-71 275.4 510 36.9
TPR.G6104 Trifolium pratense HOM05D006048 ORTHO05D007642 4.2e-71 274.2 1132 28.3
Lalb_Chr06g0167761 Lupinus albus HOM05D006048 ORTHO05D007642 7.1e-71 273.5 873 31.5
Eucgr.H04481 Eucalyptus grandis HOM05D006048 ORTHO05D007642 1.6e-70 272.3 723 31.8
Ah.06g189270 Amaranthus hybridus HOM05D006048 ORTHO05D007642 3.5e-70 271.2 688 31.5
Lsat_1_v5_gn_2_64861 Lactuca sativa HOM05D006048 ORTHO05D007642 1.8e-69 268.9 685 31.2
Nn1g02208 Nelumbo nucifera HOM05D006048 ORTHO05D007642 8.7e-69 266.5 768 30.5
Aqoxy2G03311 Aquilegia oxysepala HOM05D006048 ORTHO05D007642 2.5e-68 265.0 662 31.7
Phvul.007G180600 Phaseolus vulgaris HOM05D006048 ORTHO05D007642 6.3e-67 260.4 1098 27.1
Ca_10107_v3 Cicer arietinum L. HOM05D006048 ORTHO05D007642 6.9e-66 256.9 898 28.8
CARHR284550 Cardamine hirsuta HOM05D006048 ORTHO05D007642 7.7e-65 253.4 754 29.6
Aa31LG2G11800 Aethionema arabicum HOM05D006048 ORTHO05D007642 1.3e-64 252.7 823 28.9
Carub.0002s0845 Capsella rubella HOM05D006048 ORTHO05D007642 3.8e-64 251.1 771 29.3
VMungo0720G0675 Vigna mungo HOM05D006048 ORTHO05D007642 1.4e-63 249.2 1094 26.8
BcaB07g31106 Brassica carinata HOM05D006048 ORTHO05D007642 2.5e-63 248.4 716 30.0
A09p19290 Brassica napus HOM05D006048 ORTHO05D007642 7.2e-63 246.9 732 28.1
AT1G54920 Arabidopsis thaliana HOM05D006048 ORTHO05D007642 7.9e-62 243.4 844 28.0
AL1G65400 Arabidopsis lyrata HOM05D006048 ORTHO05D007642 8.8e-61 240.0 768 28.5
Psat6g149640 Pisum sativum HOM05D006048 ORTHO05D007642 7.4e-60 236.9 616 29.7
BraA09t37546Z Brassica rapa HOM05D006048 ORTHO05D007642 9.7e-60 236.5 761 28.1
BcaC04g22032 Brassica carinata HOM05D006048 ORTHO05D007642 1.7e-59 235.7 752 27.7
C09p24290 Brassica napus HOM05D006048 ORTHO05D007642 1.1e-58 233.0 747 27.6
PSO302G0271 Papaver somniferum HOM05D006048 ORTHO05D007642 2.4e-58 231.9 387 34.4
BolC9t55346H Brassica oleracea HOM05D006048 ORTHO05D007642 6.5e-56 223.8 758 27.3
PSO170G0056 Papaver somniferum HOM05D006048 ORTHO05D007642 4.2e-55 221.1 387 33.3
ATR0626G180 Amborella trichopoda HOM05D006048 ORTHO05D007642 6.7e-53 213.8 374 33.7
CDE05G2441 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 1.8e-50 205.7 390 35.9
Os11g0148400 Oryza sativa ssp. japonica HOM05D006048 ORTHO05D007642 2.6e-49 201.8 317 36.6
SEGI_14627 Sequoiadendron giganteum HOM05D006048 ORTHO05D007642 8.0e-46 190.3 544 28.7
Atru.chr2.428 Acer truncatum HOM05D006048 ORTHO05D007642 3.3e-44 184.9 183 48.1
Lj9A29T9 Lonicera japonica HOM05D006048 ORTHO05D007642 5.7e-36 157.5 326 34.4
HPP92_011281 Vanilla planifolia HOM05D006048 ORTHO05D007642 2.2e-35 155.6 386 30.6
HPP92_011303 Vanilla planifolia HOM05D006048 ORTHO05D007642 3.7e-35 154.8 387 30.7
Mapoly0011s0030 Marchantia polymorpha HOM05D006048 ORTHO05D007642 9.1e-34 150.2 222 34.2
Psat7g077840 Pisum sativum HOM05D006048 ORTHO05D007642 2.2e-32 145.6 176 40.9
CiPaw.07G016800 Carya illinoinensis HOM05D006048 ORTHO05D007642 5.0e-32 144.4 896 26.6
Manes.08G121600 Manihot esculenta HOM05D006048 ORTHO05D007642 6.5e-32 144.1 835 25.3
Atru.chr2.429 Acer truncatum HOM05D006048 ORTHO05D007642 4.7e-30 137.9 197 40.6
Lj9A18T10 Lonicera japonica HOM05D006048 ORTHO05D007642 5.2e-29 134.4 833 27.5
CDE05G0200 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 2.0e-28 132.5 296 32.1
AagrBONN_evm.TU.Sc2ySwM_344.3982 Anthoceros agrestis HOM05D006048 ORTHO05D007642 3.4e-28 131.7 662 24.8
MBI19_g40207_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 1.1e-23 116.7 286 32.2
CiPaw.08G165500 Carya illinoinensis HOM05D006048 ORTHO05D007642 5.4e-18 97.8 76 52.6
Actinidia01443 Actinidia chinensis HOM05D006048 ORTHO05D007642 1.3e-16 93.2 185 34.1
SMO203G0156 Selaginella moellendorffii HOM05D006048 ORTHO05D007642 2.2e-11 75.9 185 29.7
MBI12_g31451_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 3.0e-08 65.5 98 35.7
Atru.chr2.431 Acer truncatum HOM05D006048 ORTHO05D007642 4.3e-07 61.6 123 37.4


User provided reference genes

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