Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 4.8e-219 764.2 396 100.0
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 1.6e-214 749.2 396 97.2
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 1.5e-212 742.7 390 97.9
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 3.8e-208 728.0 396 94.7
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.3e-200 702.2 383 94.5
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 9.5e-199 696.8 385 93.0
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 7.3e-183 644.0 385 84.4
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 9.5e-183 643.7 384 85.4
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 2.0e-180 636.0 384 84.6
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 8.4e-179 630.6 385 82.6
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 2.4e-178 629.0 385 82.9
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 2.1e-177 625.9 385 81.8
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 2.3e-176 622.5 383 82.0
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 2.5e-175 619.0 385 82.1
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 8.4e-171 604.0 385 78.4
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 3.2e-170 602.1 385 79.2
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 3.5e-169 598.6 385 79.2
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 8.7e-168 594.0 383 78.9
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.1e-167 593.6 385 78.4
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 9.6e-167 590.5 385 78.2
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 1.8e-165 586.3 385 77.9
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 6.9e-165 584.3 385 76.9
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 1.2e-164 583.6 385 77.4
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 3.4e-164 582.0 384 76.8
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 3.4e-164 582.0 386 76.7
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 5.8e-164 581.3 384 77.3
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 1.3e-163 580.1 383 77.5
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 1.4e-162 576.6 380 77.9
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 1.9e-162 576.2 383 76.2
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 2.7e-161 572.4 384 76.0
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 4.6e-161 571.6 384 76.3
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 3.9e-160 568.5 384 75.3
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 1.1e-159 567.0 385 75.1
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 1.9e-159 566.2 385 76.1
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 2.5e-159 565.8 387 73.9
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 4.3e-159 565.1 385 74.3
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 9.6e-159 563.9 385 73.5
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 3.7e-158 562.0 383 76.8
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 3.7e-158 562.0 383 76.8
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 6.2e-158 561.2 383 72.8
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 1.4e-157 560.1 385 73.2
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 1.8e-157 559.7 382 73.3
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 2.4e-157 559.3 385 74.8
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 3.1e-157 558.9 388 73.2
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 5.3e-157 558.1 384 74.5
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 6.9e-157 557.8 383 76.2
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 6.9e-157 557.8 383 73.4
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 3.4e-156 555.4 384 74.7
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 4.5e-156 555.1 385 73.2
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 9.9e-156 553.9 388 71.4
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.3e-155 553.5 383 77.0
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 2.2e-155 552.7 383 72.8
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 2.2e-155 552.7 402 72.1
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 2.2e-155 552.7 387 73.4
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 6.4e-155 551.2 388 71.4
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 1.9e-154 549.7 391 71.6
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 5.5e-154 548.1 385 72.5
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 7.1e-154 547.7 388 71.9
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 1.2e-153 547.0 385 71.9
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 2.7e-153 545.8 383 72.8
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 3.5e-153 545.4 383 71.8
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 4.6e-153 545.0 350 79.1
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 1.8e-152 543.1 385 71.4
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 1.8e-152 543.1 388 72.7
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 1.1e-151 540.4 387 72.9
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 4.3e-151 538.5 384 71.9
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 6.2e-150 534.6 386 71.5
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 6.2e-150 534.6 384 71.6
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 1.1e-149 533.9 388 70.6
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 2.4e-149 532.7 387 70.8
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 5.3e-149 531.6 385 70.4
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 4.5e-148 528.5 385 70.4
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 7.6e-148 527.7 387 70.8
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 1.0e-147 527.3 389 71.5
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 6.5e-147 524.6 395 69.4
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 1.9e-146 523.1 388 69.6
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 7.1e-146 521.2 385 70.4
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 3.5e-145 518.8 410 66.8
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.3e-144 516.2 417 65.5
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 5.1e-144 515.0 417 65.0
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 8.7e-144 514.2 365 74.0
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.5e-143 513.5 417 65.2
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 1.6e-142 510.0 386 68.1
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.7e-142 508.8 417 64.7
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 3.7e-142 508.8 348 75.6
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 1.1e-141 507.3 384 68.5
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 2.4e-141 506.1 386 68.4
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 4.1e-141 505.4 349 72.8
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 5.3e-141 505.0 384 68.0
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 5.3e-141 505.0 384 68.0
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 9.0e-141 504.2 385 66.0
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 1.2e-140 503.8 385 68.6
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 2.6e-140 502.7 385 68.3
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 4.5e-140 501.9 387 67.2
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 5.0e-139 498.4 383 68.7
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 6.5e-139 498.0 389 67.1
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 1.9e-138 496.5 386 67.6
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 3.2e-138 495.7 385 67.0
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 5.5e-138 495.0 386 67.4
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 9.4e-138 494.2 383 66.1
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 1.6e-137 493.4 387 65.1
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 2.1e-137 493.0 385 67.8
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 2.1e-137 493.0 348 73.0
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 7.9e-137 491.1 385 66.8
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.0e-136 490.7 383 65.5
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 1.4e-136 490.3 385 67.3
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 5.1e-136 488.4 383 65.3
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 2.0e-135 486.5 385 66.8
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 2.2e-134 483.0 385 66.5
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 3.4e-132 475.7 340 69.4
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 5.9e-132 474.9 380 66.8
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 2.3e-128 463.0 399 62.4
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 1.5e-127 460.3 384 64.6
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 4.8e-126 455.3 385 63.6
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 2.2e-123 446.4 392 61.2
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 3.8e-123 445.7 388 60.6
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 1.4e-122 443.7 388 60.8
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 8.0e-121 438.0 396 60.4
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 3.0e-120 436.0 377 61.3
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 1.2e-113 414.1 391 57.3
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 2.8e-110 402.9 385 57.1
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 3.0e-104 382.9 385 55.8
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 1.7e-102 377.1 297 62.0
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 7.7e-100 368.2 270 70.0
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 5.2e-96 355.5 417 50.4
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 4.3e-90 335.9 437 45.3
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 6.8e-88 328.6 226 73.0
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 1.0e-83 314.7 368 49.2
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 1.0e-83 314.7 297 59.6
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 7.3e-82 308.5 264 59.1
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 4.4e-71 272.7 384 42.2
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 2.8e-65 253.4 185 73.0
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 1.3e-59 234.6 462 34.4
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 3.3e-58 229.9 142 85.2
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 4.8e-49 199.5 242 47.1
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.4e-48 198.0 152 73.0
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 4.3e-42 176.4 173 58.4
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 4.9e-38 162.9 125 68.8
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 6.5e-38 162.5 396 33.1
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 7.4e-34 149.1 151 58.3
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 1.0e-30 138.7 155 54.2
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 5.0e-30 136.3 177 46.3
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 5.5e-29 132.9 86 77.9
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 9.3e-29 132.1 138 58.0
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 1.1e-26 125.2 108 60.2
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.5e-26 124.0 75 77.3
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 3.7e-25 120.2 120 58.3
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 7.7e-23 112.5 212 38.7
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 7.2e-21 105.9 84 63.1
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 7.2e-21 105.9 82 63.4
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 7.9e-20 102.4 126 54.0
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 3.9e-19 100.1 126 53.2
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 2.2e-17 94.4 75 64.0
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 2.0e-15 87.8 125 48.8
Zm00001eb193770 Zea mays HOM05D004239 ORTHO05D445176 2.9e-14 84.0 82 52.4
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 6.5e-14 82.8 106 48.1
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 4.2e-13 80.1 86 57.0
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 2.7e-12 77.4 51 68.6
Zm00001eb313220 Zea mays HOM05D004239 ORTHO05D005191 1.8e-11 74.7 94 46.8
arahy.Tifrunner.gnm1.ann1.04YHM3 Arachis hypogaea HOM05D004239 ORTHO05D005191 6.7e-11 72.8 101 47.5
Oeu038248.1 Olea europaea HOM05D004239 ORTHO05D288322 6.7e-11 72.8 59 66.1
Potri.015G125201 Populus trichocarpa HOM05D004239 ORTHO05D005191 1.5e-10 71.6 51 62.7
RcHm_v2.0_Chr3g0454471 Rosa chinensis HOM05D004239 ORTHO05D005191 1.4e-08 65.1 36 88.9
Zm00001eb342830 Zea mays HOM05D004239 ORTHO05D005191 1.5e-07 61.6 38 81.6
Zm00001eb019540 Zea mays HOM05D000931 ORTHO05D001924 5.9e-07 59.7 38 78.9
TPR.G33192 Trifolium pratense HOM05D004239 ORTHO05D410682 1.3e-06 58.5 78 47.4
Zm00001eb406200 Zea mays HOM05D004239 ORTHO05D005191 1.7e-06 58.2 80 45.0


User provided reference genes

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