Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 1.0e-67 260.0 134 100.0
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 1.7e-38 162.9 83 98.8
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 4.9e-38 161.4 82 96.3
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 1.1e-37 160.2 80 97.5
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 5.4e-37 157.9 82 96.3
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 2.0e-36 156.0 82 91.5
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 3.5e-36 155.2 79 93.7
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 3.5e-36 155.2 79 96.2
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 1.3e-35 153.3 82 91.5
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 1.3e-35 153.3 82 90.2
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 1.3e-35 153.3 82 91.5
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 1.7e-35 152.9 78 97.4
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 1.7e-35 152.9 78 97.4
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 2.3e-35 152.5 80 93.8
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.9e-35 152.1 81 92.6
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 3.9e-35 151.8 78 96.2
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 3.9e-35 151.8 79 93.7
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 3.9e-35 151.8 81 91.4
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 6.6e-35 151.0 82 92.7
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 6.6e-35 151.0 83 86.7
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 1.1e-34 150.2 82 91.5
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 1.1e-34 150.2 82 91.5
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 1.5e-34 149.8 82 91.5
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.9e-34 149.4 82 90.2
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 2.5e-34 149.1 82 89.0
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 4.3e-34 148.3 80 91.2
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 4.3e-34 148.3 101 77.2
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 1.2e-33 146.7 81 90.1
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.2e-33 146.7 82 90.2
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 1.6e-33 146.4 82 86.6
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 1.6e-33 146.4 79 88.6
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 1.6e-33 146.4 79 88.6
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 1.6e-33 146.4 79 88.6
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 1.6e-33 146.4 82 86.6
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 1.6e-33 146.4 79 88.6
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 1.6e-33 146.4 76 90.8
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 2.1e-33 146.0 82 90.2
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 2.8e-33 145.6 81 87.7
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 3.6e-33 145.2 82 84.1
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 3.6e-33 145.2 82 87.8
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 4.7e-33 144.8 82 89.0
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 6.2e-33 144.4 80 87.5
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 6.2e-33 144.4 82 84.1
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 8.0e-33 144.1 79 88.6
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 1.0e-32 143.7 79 88.6
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 1.0e-32 143.7 79 88.6
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 1.0e-32 143.7 82 87.8
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 1.4e-32 143.3 79 87.3
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 1.4e-32 143.3 82 82.9
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 1.4e-32 143.3 82 82.9
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 1.4e-32 143.3 79 88.6
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 1.8e-32 142.9 82 86.6
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 1.8e-32 142.9 79 89.9
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 2.3e-32 142.5 79 87.3
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 2.3e-32 142.5 82 86.6
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 2.3e-32 142.5 81 85.2
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 2.3e-32 142.5 102 71.6
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 2.3e-32 142.5 82 86.6
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 3.1e-32 142.1 78 89.7
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 3.1e-32 142.1 82 85.4
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 3.1e-32 142.1 82 85.4
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 3.1e-32 142.1 82 85.4
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 4.0e-32 141.7 82 84.1
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 4.0e-32 141.7 82 85.4
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 4.0e-32 141.7 82 85.4
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 4.0e-32 141.7 79 86.1
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 4.0e-32 141.7 82 84.1
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 4.0e-32 141.7 82 87.8
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 5.2e-32 141.4 82 84.1
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 5.2e-32 141.4 82 84.1
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 5.2e-32 141.4 82 84.1
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 5.2e-32 141.4 82 84.1
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 5.2e-32 141.4 81 82.7
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 5.2e-32 141.4 82 85.4
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 5.2e-32 141.4 82 84.1
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 5.2e-32 141.4 82 85.4
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 5.2e-32 141.4 82 84.1
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 6.8e-32 141.0 78 88.5
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 6.8e-32 141.0 82 85.4
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 6.8e-32 141.0 82 85.4
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 6.8e-32 141.0 82 81.7
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 8.9e-32 140.6 83 81.9
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 1.2e-31 140.2 82 84.1
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 1.2e-31 140.2 82 86.6
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 1.2e-31 140.2 82 84.1
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 1.2e-31 140.2 82 84.1
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 1.2e-31 140.2 82 82.9
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 1.5e-31 139.8 82 82.9
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 1.5e-31 139.8 82 82.9
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 1.5e-31 139.8 82 82.9
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 2.0e-31 139.4 79 84.8
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 2.0e-31 139.4 79 84.8
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 2.0e-31 139.4 82 84.1
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 2.0e-31 139.4 79 86.1
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 2.6e-31 139.0 82 81.7
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 2.6e-31 139.0 82 82.9
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 2.6e-31 139.0 82 82.9
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 7.5e-31 137.5 82 81.7
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 7.5e-31 137.5 82 80.5
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 7.5e-31 137.5 81 80.2
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 7.5e-31 137.5 76 85.5
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 9.8e-31 137.1 82 80.5
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 9.8e-31 137.1 75 85.3
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 9.8e-31 137.1 82 82.9
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 1.3e-30 136.7 75 90.7
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 1.3e-30 136.7 75 88.0
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 1.3e-30 136.7 75 88.0
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 1.3e-30 136.7 83 81.9
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 1.7e-30 136.3 79 81.0
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 1.7e-30 136.3 83 79.5
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 2.9e-30 135.6 70 91.4
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 4.9e-30 134.8 75 88.0
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 8.3e-30 134.0 82 81.7
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 8.3e-30 134.0 82 81.7
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 1.9e-29 132.9 73 86.3
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 1.9e-29 132.9 75 85.3
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.2e-29 132.1 82 81.7
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 3.2e-29 132.1 82 75.6
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 4.1e-29 131.7 82 74.4
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 1.6e-28 129.8 82 73.2
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 3.0e-27 125.6 71 84.5
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 5.0e-27 124.8 67 92.5
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 5.0e-27 124.8 71 84.5
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 1.1e-26 123.6 76 76.3
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.3e-26 122.1 82 75.6
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 3.3e-26 122.1 82 75.6
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 1.4e-24 116.7 71 80.3
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 6.8e-24 114.4 56 98.2
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 9.8e-23 110.5 105 58.1
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 1.7e-22 109.8 75 64.0
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 2.2e-22 109.4 70 64.3
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 2.4e-21 105.9 54 92.6
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 4.6e-20 101.7 57 84.2
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 7.8e-20 100.9 56 85.7
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 1.0e-19 100.5 56 85.7
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 8.6e-19 97.4 56 82.1
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 4.7e-17 91.7 84 51.2
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 3.7e-14 82.0 45 86.7
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 6.4e-14 81.3 74 48.6
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 9.2e-13 77.4 81 54.3
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 3.0e-11 72.4 42 78.6
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 5.1e-11 71.6 75 45.3
QL11p051435 Quercus lobata HOM05D004554 ORTHO05D005360 2.9e-06 55.8 29 89.7


User provided reference genes

Program Settings