Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401027437 Solanum tuberosum HOM05D004467 ORTHO05D004918 3.5e-211 738.0 376 100.0
Sopen05g015080 Solanum pennellii HOM05D004467 ORTHO05D004918 6.7e-186 654.1 343 97.1
Solyc05g018320.3 Solanum lycopersicum HOM05D004467 ORTHO05D004918 8.2e-184 647.1 343 95.9
CAN.G587.15 Capsicum annuum HOM05D004467 ORTHO05D004918 2.0e-166 589.3 345 89.0
Nitab4.5_0004727g0020 Nicotiana tabacum HOM05D004467 ORTHO05D004918 1.4e-159 566.6 363 82.6
Nitab4.5_0000012g0160 Nicotiana tabacum HOM05D004467 ORTHO05D004918 6.8e-154 547.7 345 83.5
Peaxi162Scf00539g00210 Petunia axillaris HOM05D004467 ORTHO05D004918 1.8e-151 539.7 345 80.3
Lj7C659T11 Lonicera japonica HOM05D004467 ORTHO05D004918 1.4e-95 354.0 355 56.9
Prupe.7G224200 Prunus persica HOM05D004467 ORTHO05D004918 5.1e-93 345.5 329 58.7
Actinidia20407 Actinidia chinensis HOM05D004467 ORTHO05D004918 2.5e-92 343.2 333 57.4
QL02p042682 Quercus lobata HOM05D004467 ORTHO05D004918 9.6e-92 341.3 331 58.3
Haze_25793 Corylus avellana HOM05D004467 ORTHO05D004918 2.1e-91 340.1 333 57.1
MD15G1193100 Malus domestica HOM05D004467 ORTHO05D004918 2.1e-91 340.1 329 57.8
QL02p042959 Quercus lobata HOM05D004467 ORTHO05D004918 2.1e-91 340.1 331 58.3
CSS0045223 Camellia sinensis var. sinensis HOM05D004467 ORTHO05D004918 3.7e-91 339.3 350 56.0
Actinidia09440 Actinidia chinensis HOM05D004467 ORTHO05D004918 8.1e-91 338.2 328 55.8
Cfa003215 Carpinus fangiana HOM05D004467 ORTHO05D004918 1.8e-90 337.0 333 57.1
Ciclev10008049m.g Citrus clementina HOM05D004467 ORTHO05D004918 5.3e-90 335.5 348 55.7
CiPaw.03G227200 Carya illinoinensis HOM05D004467 ORTHO05D004918 1.5e-89 334.0 338 56.5
CSS0050424 Camellia sinensis var. sinensis HOM05D004467 ORTHO05D004918 2.6e-89 333.2 350 55.1
FAN23G1822 Fragaria x ananassa HOM05D004467 ORTHO05D004918 2.6e-89 333.2 327 58.4
RcHm_v2.0_Chr2g0091401 Rosa chinensis HOM05D004467 ORTHO05D004918 3.4e-89 332.8 327 58.7
Oeu053753.2 Olea europaea HOM05D004467 ORTHO05D004918 1.3e-88 330.9 349 53.6
FAN26G2528 Fragaria x ananassa HOM05D004467 ORTHO05D004918 4.2e-87 325.9 327 57.5
FAN28G1510 Fragaria x ananassa HOM05D004467 ORTHO05D004918 5.5e-87 325.5 327 57.5
FAN19G0416 Fragaria x ananassa HOM05D004467 ORTHO05D004918 1.6e-86 323.9 327 57.5
FvH4_1g05760 Fragaria vesca HOM05D004467 ORTHO05D004918 2.1e-86 323.6 327 57.8
Rhsim05G0042300 Rhododendron simsii HOM05D004467 ORTHO05D004918 3.5e-86 322.8 333 54.1
FAN26G1468 Fragaria x ananassa HOM05D004467 ORTHO05D004918 6.0e-86 322.0 325 57.5
Manes.03G024900 Manihot esculenta HOM05D004467 ORTHO05D004918 1.8e-85 320.5 366 51.9
Atru.chr7.1422 Acer truncatum HOM05D004467 ORTHO05D004918 1.3e-83 314.3 350 52.6
Thecc.09G104300 Theobroma cacao HOM05D004467 ORTHO05D004918 2.1e-83 313.5 346 53.2
SalBow5G0997 Salvia bowleyana HOM05D004467 ORTHO05D004918 6.3e-83 312.0 348 51.7
Potri.018G085100 Populus trichocarpa HOM05D004467 ORTHO05D004918 1.8e-82 310.5 349 52.7
Hma1.2p1_0945F.1_g240200 Hydrangea macrophylla HOM05D004467 ORTHO05D004918 5.3e-82 308.9 331 55.9
MSTRG.10616 Avicennia marina HOM05D004467 ORTHO05D004918 9.0e-82 308.1 348 50.9
Manes.16G111600 Manihot esculenta HOM05D004467 ORTHO05D004918 1.5e-81 307.4 366 52.2
COL.COLO4_34790 Corchorus olitorius HOM05D004467 ORTHO05D004918 2.0e-81 307.0 366 50.0
CSS0030226 Camellia sinensis var. sinensis HOM05D004467 ORTHO05D004918 2.9e-80 303.1 345 51.9
CANSAT56G0937 Cannabis sativa HOM05D004467 ORTHO05D004918 2.5e-79 300.1 333 51.7
MD02G1058800 Malus domestica HOM05D004467 ORTHO05D004918 2.5e-79 300.1 343 50.4
vmacro10868 Vaccinium macrocarpon HOM05D004467 ORTHO05D004918 7.2e-79 298.5 339 53.4
Sabra18G0073600 Salix brachista HOM05D004467 ORTHO05D004918 6.1e-78 295.4 349 51.0
Potri.006G162900 Populus trichocarpa HOM05D004467 ORTHO05D004918 7.9e-78 295.0 364 49.7
Duzib168G1064 Durio zibethinus HOM05D004467 ORTHO05D004918 1.8e-77 293.9 364 48.6
ECA240G1275 Erigeron canadensis HOM05D004467 ORTHO05D004918 2.3e-77 293.5 351 51.3
Cc06_g10170 Coffea canephora HOM05D004467 ORTHO05D004918 5.1e-77 292.4 347 51.9
Gohir.A05G025400 Gossypium hirsutum HOM05D004467 ORTHO05D004918 6.9e-74 282.0 366 47.3
Gorai.009G027000 Gossypium raimondii HOM05D004467 ORTHO05D004918 1.2e-73 281.2 366 47.0
Gohir.D05G026900 Gossypium hirsutum HOM05D004467 ORTHO05D004918 1.0e-72 278.1 366 47.0
Duzib187G1021 Durio zibethinus HOM05D004467 ORTHO05D004918 2.2e-72 276.9 346 49.4
Glyma.01G146400 Glycine max HOM05D004467 ORTHO05D004918 2.9e-72 276.6 351 49.3
Dinv41649 Davidia involucrata HOM05D004467 ORTHO05D004918 1.1e-71 274.6 367 47.4
Lj2g0027738 Lotus japonicus HOM05D004467 ORTHO05D004918 2.7e-70 270.0 351 47.6
VMungo0464G1817 Vigna mungo HOM05D004467 ORTHO05D004918 3.0e-69 266.5 331 48.9
Phvul.004G169100 Phaseolus vulgaris HOM05D004467 ORTHO05D004918 8.8e-69 265.0 330 48.5
Ca_25554_v3 Cicer arietinum L. HOM05D004467 ORTHO05D004918 1.5e-68 264.2 359 48.5
TAR626G1578 Trochodendron aralioides HOM05D004467 ORTHO05D004918 1.7e-67 260.8 381 45.1
TAR636G0217 Trochodendron aralioides HOM05D004467 ORTHO05D004918 2.8e-67 260.0 381 45.1
arahy.Tifrunner.gnm1.ann1.4I8WV5 Arachis hypogaea HOM05D004467 ORTHO05D004918 6.3e-67 258.8 353 46.5
arahy.Tifrunner.gnm1.ann1.6QT9XW Arachis hypogaea HOM05D004467 ORTHO05D004918 6.3e-67 258.8 355 46.2
Psat1g045360 Pisum sativum HOM05D004467 ORTHO05D004918 1.1e-66 258.1 353 46.7
TWI63G0792 Tripterygium wilfordii HOM05D004467 ORTHO05D004918 5.3e-66 255.8 349 48.1
Medtr6g087140 Medicago truncatula HOM05D004467 ORTHO05D004918 9.1e-66 255.0 352 46.9
Dinv36673 Davidia involucrata HOM05D004467 ORTHO05D004918 3.4e-65 253.1 237 58.6
DCAR_024697 Daucus carota HOM05D004467 ORTHO05D004918 6.5e-64 248.8 339 45.1
Eucgr.C03788 Eucalyptus grandis HOM05D004467 ORTHO05D004918 8.5e-64 248.4 327 47.4
TWI32G0931 Tripterygium wilfordii HOM05D004467 ORTHO05D004918 8.5e-64 248.4 349 47.3
Lalb_Chr05g0223111 Lupinus albus HOM05D004467 ORTHO05D004918 4.2e-63 246.1 332 46.1
Nn3g18160 Nelumbo nucifera HOM05D004467 ORTHO05D004918 9.4e-63 245.0 381 41.7
Lalb_Chr16g0388041 Lupinus albus HOM05D004467 ORTHO05D004918 2.1e-62 243.8 328 45.7
Cpa.g.sc40.31 Carica papaya HOM05D004467 ORTHO05D004918 2.7e-62 243.4 361 45.4
Glyma.09G193900 Glycine max HOM05D004467 ORTHO05D004918 8.8e-61 238.4 352 46.0
Gorai.010G074900 Gossypium raimondii HOM05D004467 ORTHO05D004918 9.7e-60 235.0 346 45.7
PGR102G2224 Punica granatum HOM05D004467 ORTHO05D004918 1.3e-59 234.6 332 45.2
Gohir.A06G065600 Gossypium hirsutum HOM05D004467 ORTHO05D004918 2.4e-58 230.3 346 44.5
TAR383G0828 Trochodendron aralioides HOM05D004467 ORTHO05D004918 4.5e-57 226.1 380 40.3
Migut.K00515 Erythranthe guttata HOM05D004467 ORTHO05D004918 1.0e-56 224.9 347 45.5
SGA_v2.0_scaffold5G02535 Striga asiatica HOM05D004467 ORTHO05D004918 1.5e-55 221.1 367 43.6
CsaV3_6G021320 Cucumis sativus L. HOM05D004467 ORTHO05D004918 2.5e-55 220.3 335 43.0
Lsat_1_v5_gn_7_41160 Lactuca sativa HOM05D004467 ORTHO05D004918 5.5e-55 219.2 348 43.4
CsaV3_2G002070 Cucumis sativus L. HOM05D004467 ORTHO05D004918 2.1e-54 217.2 355 41.7
ClCG11G002290 Citrullus lanatus HOM05D004467 ORTHO05D004918 8.0e-54 215.3 330 42.7
TPR.G28824 Trifolium pratense HOM05D004467 ORTHO05D004918 1.8e-53 214.2 350 42.9
MELO3C024641.2 Cucumis melo HOM05D004467 ORTHO05D004918 3.0e-53 213.4 352 41.2
MELO3C004575.2 Cucumis melo HOM05D004467 ORTHO05D004918 2.0e-52 210.7 327 41.6
Lj8C70G12 Lonicera japonica HOM05D004467 ORTHO05D004918 9.1e-50 201.8 351 43.0
Sed0000460 Sechium edule HOM05D004467 ORTHO05D004918 6.5e-48 195.7 350 39.4
Aqoxy7G01500 Aquilegia oxysepala HOM05D004467 ORTHO05D004918 6.8e-45 185.7 391 38.1
EL10Ac8g18417 Beta vulgaris HOM05D004467 ORTHO05D004918 1.5e-44 184.5 355 36.9
unitig_22.g6724 Utricularia gibba HOM05D004467 ORTHO05D004918 7.5e-44 182.2 339 40.1
Gohir.D06G064200 Gossypium hirsutum HOM05D004467 ORTHO05D004918 1.1e-42 178.3 346 38.7
AUR62021444 Chenopodium quinoa HOM05D004467 ORTHO05D004918 3.5e-41 173.3 361 34.3
Hund26245 Selenicereus undatus HOM05D004467 ORTHO05D004918 3.5e-41 173.3 324 35.5
THA.LOC104820046 Tarenaya hassleriana HOM05D004467 ORTHO05D004918 4.2e-39 166.4 332 39.5
HanXRQChr09g0239001 Helianthus annuus HOM05D004467 ORTHO05D004918 2.1e-38 164.1 312 42.6
HanXRQChr03g0061251 Helianthus annuus HOM05D004467 ORTHO05D004918 6.1e-38 162.5 307 39.4
Carub.0007s1175 Capsella rubella HOM05D004467 ORTHO05D004918 2.3e-37 160.6 346 39.3
AUR62010932 Chenopodium quinoa HOM05D004467 ORTHO05D004918 2.6e-36 157.1 358 33.5
Sed0017359 Sechium edule HOM05D004467 ORTHO05D004918 2.6e-36 157.1 355 36.9
AT4G28910 Arabidopsis thaliana HOM05D004467 ORTHO05D004918 2.2e-35 154.1 342 38.6
AL7G23580 Arabidopsis lyrata HOM05D004467 ORTHO05D004918 8.3e-35 152.1 353 38.5
Thhalv10025262m.g Eutrema salsugineum HOM05D004467 ORTHO05D004918 1.8e-34 151.0 343 38.2
ATR0705G047 Amborella trichopoda HOM05D004467 ORTHO05D004918 2.0e-33 147.5 348 33.6
Sp7g26880 Schrenkiella parvula HOM05D004467 ORTHO05D004918 2.0e-33 147.5 347 36.9
PSO210G6045 Papaver somniferum HOM05D004467 ORTHO05D004918 2.7e-33 147.1 381 34.6
PSO210G7819 Papaver somniferum HOM05D004467 ORTHO05D004918 1.3e-32 144.8 383 35.0
CARHR236680 Cardamine hirsuta HOM05D004467 ORTHO05D004918 2.3e-32 144.1 344 38.4
CsaV3_1G019490 Cucumis sativus L. HOM05D004467 ORTHO05D004918 2.3e-32 144.1 229 40.2
BraA01t00851Z Brassica rapa HOM05D004467 ORTHO05D004918 1.5e-31 141.4 355 37.7
Hund09233 Selenicereus undatus HOM05D004467 ORTHO05D004918 3.6e-30 136.7 328 32.3
BcaNung01350 Brassica carinata HOM05D004467 ORTHO05D004918 1.0e-29 135.2 348 37.4
C01p10580 Brassica napus HOM05D004467 ORTHO05D004918 1.0e-29 135.2 339 39.2
A01p09030 Brassica napus HOM05D004467 ORTHO05D004918 1.8e-29 134.4 356 36.8
BcaC09g51670 Brassica carinata HOM05D004467 ORTHO05D004918 2.3e-29 134.0 339 38.9
BolC1t01020H Brassica oleracea HOM05D004467 ORTHO05D004918 2.3e-29 134.0 339 38.9
TAR636G1964 Trochodendron aralioides HOM05D004467 ORTHO05D004918 2.7e-25 120.6 282 33.7
BcaNung06399 Brassica carinata HOM05D004467 ORTHO05D004918 1.6e-22 111.3 305 36.7
Sc08g0007800 Simmondsia chinensis HOM05D004467 ORTHO05D004918 3.6e-22 110.2 306 32.4
MBI01_g39827_MAGBIO Magnolia biondii HOM05D004467 ORTHO05D004918 4.7e-22 109.8 371 31.3
C07p56500 Brassica napus HOM05D004467 ORTHO05D004918 2.3e-21 107.5 315 33.0
BcaNung02901 Brassica carinata HOM05D004467 ORTHO05D004918 3.1e-21 107.1 342 32.2
BolC7t46129H Brassica oleracea HOM05D004467 ORTHO05D004918 5.2e-21 106.3 316 32.6
Aa31LG2G21270 Aethionema arabicum HOM05D004467 ORTHO05D004918 6.8e-21 105.9 322 33.5
A03p58480 Brassica napus HOM05D004467 ORTHO05D004918 6.8e-21 105.9 308 33.1
BraA03t14909Z Brassica rapa HOM05D004467 ORTHO05D004918 6.8e-21 105.9 308 33.1
CDE05G0303 Ceratophyllum demersum HOM05D004467 ORTHO05D004918 1.2e-20 105.1 343 29.4
CDE05G2925 Ceratophyllum demersum HOM05D004467 ORTHO05D004918 8.3e-19 99.0 347 30.0
MBI01_g24452_MAGBIO Magnolia biondii HOM05D004467 ORTHO05D004918 1.9e-18 97.8 385 30.9
THA.LOC104814564 Tarenaya hassleriana HOM05D004467 ORTHO05D004918 2.0e-17 94.4 317 32.5
HPP92_027881 Vanilla planifolia HOM05D004467 ORTHO05D004918 1.0e-16 92.0 378 30.7
Os05g0558800 Oryza sativa ssp. japonica HOM05D004467 ORTHO05D004918 1.6e-14 84.7 225 31.1
SEGI_06055 Sequoiadendron giganteum HOM05D025566 ORTHO05D004918 8.9e-13 79.0 412 26.9
BcaNung01354 Brassica carinata HOM05D004467 ORTHO05D004918 4.6e-09 66.6 181 34.8
CsaV3_1G019480 Cucumis sativus L. HOM05D004467 ORTHO05D004918 4.6e-09 66.6 70 52.9
Zm00001eb343360 Zea mays HOM05D004467 ORTHO05D004918 7.8e-09 65.9 328 27.1
SEGI_16741 Sequoiadendron giganteum HOM05D025566 ORTHO05D004918 1.9e-07 61.2 415 25.8
SEGI_21638 Sequoiadendron giganteum HOM05D025566 ORTHO05D004918 4.3e-07 60.1 407 25.3
Aa31LG8G16970 Aethionema arabicum HOM05D004467 ORTHO05D004918 1.2e-06 58.5 183 34.4
HPP92_006324 Vanilla planifolia HOM05D004467 ORTHO05D004918 3.6e-06 57.0 369 27.4


User provided reference genes

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