Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 2.2e-84 316.6 163 100.0
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 3.6e-74 282.7 159 93.7
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 1.0e-73 281.2 159 93.1
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 2.2e-68 263.5 159 83.6
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 1.4e-57 227.6 158 73.4
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 4.0e-57 226.1 159 74.8
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 7.5e-56 221.9 184 66.8
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 4.9e-55 219.2 159 70.4
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 3.1e-54 216.5 159 71.1
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 5.4e-54 215.7 159 69.2
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 2.7e-53 213.4 158 68.4
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 5.9e-53 212.2 158 70.9
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 1.3e-52 211.1 201 57.7
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 1.7e-52 210.7 156 69.2
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 2.9e-52 209.9 156 67.9
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 7.3e-51 205.3 161 65.8
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 9.5e-51 204.9 158 69.0
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 4.7e-50 202.6 158 67.1
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 6.1e-50 202.2 190 60.0
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 5.2e-49 199.1 136 71.3
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 8.9e-49 198.4 152 69.1
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 1.1e-46 191.4 157 66.2
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 1.4e-46 191.0 141 71.6
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 7.0e-46 188.7 212 52.4
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 7.0e-46 188.7 156 62.8
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 1.2e-45 188.0 158 62.7
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 3.5e-45 186.4 156 61.5
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 3.5e-45 186.4 140 67.1
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 3.5e-45 186.4 158 61.4
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 5.9e-45 185.7 154 64.3
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 1.0e-44 184.9 156 64.7
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 1.3e-44 184.5 158 63.3
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 1.7e-44 184.1 158 63.3
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 2.3e-44 183.7 158 61.4
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 6.6e-44 182.2 158 63.3
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 1.5e-43 181.0 158 62.7
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 1.9e-43 180.6 159 59.7
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 1.9e-43 180.6 156 62.2
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 2.5e-43 180.3 158 59.5
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 3.3e-43 179.9 158 63.3
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 5.6e-43 179.1 157 63.1
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 5.6e-43 179.1 157 63.1
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 7.3e-43 178.7 141 66.7
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 9.5e-43 178.3 159 62.9
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 2.1e-42 177.2 157 62.4
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 2.1e-42 177.2 157 60.5
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 3.6e-42 176.4 156 60.9
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 4.7e-42 176.0 157 62.4
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 4.7e-42 176.0 158 57.6
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 4.7e-42 176.0 158 58.9
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 6.2e-42 175.6 157 60.5
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 6.2e-42 175.6 157 60.5
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 6.2e-42 175.6 157 60.5
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 8.0e-42 175.3 159 62.3
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 1.0e-41 174.9 159 62.3
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 1.0e-41 174.9 157 61.1
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 1.0e-41 174.9 156 62.8
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 1.4e-41 174.5 159 60.4
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 1.8e-41 174.1 159 61.6
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 1.8e-41 174.1 158 57.6
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 1.8e-41 174.1 158 60.1
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 1.8e-41 174.1 166 60.2
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 2.3e-41 173.7 140 64.3
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 2.3e-41 173.7 156 61.5
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 3.1e-41 173.3 158 58.2
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 4.0e-41 172.9 159 61.0
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 6.8e-41 172.2 158 58.9
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 1.5e-40 171.0 159 59.1
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 2.0e-40 170.6 162 59.3
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 2.6e-40 170.2 146 62.3
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 2.6e-40 170.2 171 55.0
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 2.6e-40 170.2 146 61.6
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 2.6e-40 170.2 154 59.1
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 3.4e-40 169.9 142 63.4
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 5.8e-40 169.1 158 57.0
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 7.5e-40 168.7 158 57.6
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 9.8e-40 168.3 146 61.0
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 1.3e-39 167.9 160 57.5
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 4.9e-39 166.0 159 58.5
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 6.4e-39 165.6 137 64.2
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 2.4e-38 163.7 158 57.6
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 2.4e-38 163.7 158 57.6
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 2.4e-38 163.7 158 57.6
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 2.4e-38 163.7 158 57.6
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 2.4e-38 163.7 169 55.0
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 4.1e-38 162.9 169 54.4
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 7.0e-38 162.2 157 55.4
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 4.6e-37 159.5 160 58.1
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 4.6e-37 159.5 136 60.3
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 3.9e-36 156.4 187 50.8
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 6.6e-36 155.6 112 69.6
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 1.1e-35 154.8 156 53.2
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 2.5e-35 153.7 112 67.9
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 8.1e-34 148.7 144 59.0
Nitab4.5_0003408g0010 Nicotiana tabacum HOM05D004192 ORTHO05D004917 3.1e-33 146.7 95 78.9
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 4.0e-33 146.4 126 57.9
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 5.2e-33 146.0 153 52.3
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 5.2e-33 146.0 181 49.2
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 1.5e-32 144.4 126 57.1
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 1.7e-31 141.0 158 48.7
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 2.2e-31 140.6 255 39.2
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 2.2e-31 140.6 155 48.4
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 3.7e-31 139.8 158 47.5
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 4.9e-31 139.4 161 47.8
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 1.1e-30 138.3 161 48.4
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 1.1e-30 138.3 161 48.4
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 1.1e-30 138.3 139 50.4
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 1.4e-30 137.9 139 50.4
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 4.1e-30 136.3 159 48.4
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 5.4e-30 136.0 139 49.6
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 5.4e-30 136.0 139 49.6
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 9.2e-30 135.2 161 47.2
QL04p040713 Quercus lobata HOM05D004192 ORTHO05D004917 9.2e-30 135.2 120 63.3
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 4.6e-29 132.9 153 48.4
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 1.3e-28 131.3 156 51.9
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 3.0e-28 130.2 155 51.0
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 1.5e-27 127.9 138 49.3
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 3.4e-24 116.7 85 69.4
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 4.9e-23 112.8 139 45.3
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 2.4e-22 110.5 132 44.7
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 1.2e-21 108.2 135 48.9
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 3.0e-20 103.6 67 73.1
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 1.9e-19 100.9 114 46.5
RcHm_v2.0_Chr4g0433221 Rosa chinensis HOM05D004192 ORTHO05D004917 3.6e-18 96.7 61 77.0
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 1.8e-17 94.4 64 70.3
RcHm_v2.0_Chr0c16g0499861 Rosa chinensis HOM05D004192 ORTHO05D004917 8.9e-17 92.0 88 55.7
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 5.8e-16 89.4 98 53.1
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 1.4e-14 84.7 142 40.1
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 3.2e-14 83.6 59 71.2
Hma1.2p1_0492F.1_g164730 Hydrangea macrophylla HOM05D011107 ORTHO05D012795 6.6e-12 75.9 77 54.5
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 5.6e-11 72.8 39 92.3
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 6.9e-09 65.9 40 77.5
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 5.8e-08 62.8 56 62.5
RcHm_v2.0_Chr2g0132831 Rosa chinensis HOM05D004192 ORTHO05D004917 5.8e-08 62.8 37 83.8
Lsat_1_v5_gn_6_80241 Lactuca sativa HOM05D004192 ORTHO05D004917 4.9e-07 59.7 44 65.9


User provided reference genes

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