Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401026985 Solanum tuberosum HOM05D000295 ORTHO05D050727 2.5e-26 121.3 61 100.0
Solyc06g071800.4 Solanum lycopersicum HOM05D000295 ORTHO05D000188 6.3e-17 90.1 45 100.0
Sopen06g028090 Solanum pennellii HOM05D000295 ORTHO05D000188 6.3e-17 90.1 45 100.0
Peaxi162Scf00089g01330 Petunia axillaris HOM05D000295 ORTHO05D000188 8.2e-17 89.7 51 86.3
Nitab4.5_0008125g0020 Nicotiana tabacum HOM05D000295 ORTHO05D000188 5.3e-16 87.0 45 95.6
Peaxi162Scf00763g00427 Petunia axillaris HOM05D000295 ORTHO05D000188 5.3e-16 87.0 45 95.6
CAN.G993.17 Capsicum annuum HOM05D000295 ORTHO05D000188 1.2e-15 85.9 45 93.3
Nitab4.5_0000003g0870 Nicotiana tabacum HOM05D000295 ORTHO05D000188 2.6e-15 84.7 45 93.3
Nitab4.5_0008913g0030 Nicotiana tabacum HOM05D000295 ORTHO05D000188 2.6e-15 84.7 45 91.1
Nitab4.5_0002522g0030 Nicotiana tabacum HOM05D000295 ORTHO05D000188 1.0e-14 82.8 45 88.9
CAN.G338.48 Capsicum annuum HOM05D000295 ORTHO05D000188 1.3e-14 82.4 45 88.9
PGSC0003DMG400018191 Solanum tuberosum HOM05D000295 ORTHO05D000188 2.2e-14 81.6 45 86.7
Solyc03g112140.4 Solanum lycopersicum HOM05D000295 ORTHO05D000188 3.8e-14 80.9 45 86.7
Sopen03g031230 Solanum pennellii HOM05D000295 ORTHO05D000188 3.8e-14 80.9 45 86.7
MSTRG.11500 Avicennia marina HOM05D000295 ORTHO05D000188 4.2e-13 77.4 45 82.2
Cc04_g11420 Coffea canephora HOM05D000295 ORTHO05D000188 5.5e-13 77.0 45 80.0
Migut.D02005 Erythranthe guttata HOM05D000295 ORTHO05D000188 5.5e-13 77.0 45 80.0
SGA_v2.0_scaffold90G27836 Striga asiatica HOM05D000295 ORTHO05D000188 6.1e-12 73.6 46 76.1
SalBow5G2728 Salvia bowleyana HOM05D000295 ORTHO05D000188 7.9e-12 73.2 45 75.6
SGA_v2.0_scaffold7G04165 Striga asiatica HOM05D000295 ORTHO05D000188 1.0e-11 72.8 45 80.0
Oeu020882.1 Olea europaea HOM05D000295 ORTHO05D000188 2.3e-11 71.6 45 75.6
Cfa019226 Carpinus fangiana HOM05D000295 ORTHO05D000188 3.0e-11 71.2 45 80.0
Oeu036499.1 Olea europaea HOM05D000295 ORTHO05D000188 3.9e-11 70.9 45 77.8
Dinv20595 Davidia involucrata HOM05D000295 ORTHO05D000188 6.7e-11 70.1 45 80.0
Lj9C441G11 Lonicera japonica HOM05D000295 ORTHO05D000188 6.7e-11 70.1 45 80.0
Oeu040865.1 Olea europaea HOM05D000295 ORTHO05D000188 6.7e-11 70.1 45 75.6
Cpa.g.sc159.14 Carica papaya HOM05D000295 ORTHO05D000188 1.1e-10 69.3 45 75.6
Potri.012G086700 Populus trichocarpa HOM05D000295 ORTHO05D000188 1.1e-10 69.3 51 68.6
vmacro19291 Vaccinium macrocarpon HOM05D000295 ORTHO05D000188 1.1e-10 69.3 45 77.8
Haze_07594 Corylus avellana HOM05D000295 ORTHO05D000188 1.5e-10 68.9 45 77.8
DCAR_021594 Daucus carota HOM05D000295 ORTHO05D000188 1.5e-10 68.9 45 77.8
Manes.06G111100 Manihot esculenta HOM05D000295 ORTHO05D000188 1.5e-10 68.9 45 75.6
TAR374G0220 Trochodendron aralioides HOM05D000295 ORTHO05D000188 1.5e-10 68.9 45 77.8
Ciclev10019340m.g Citrus clementina HOM05D000295 ORTHO05D000188 2.0e-10 68.6 45 75.6
Lj5A130T71 Lonicera japonica HOM05D000295 ORTHO05D000188 2.6e-10 68.2 45 77.8
CANSAT80G0099 Cannabis sativa HOM05D000295 ORTHO05D000188 3.3e-10 67.8 45 73.3
Dinv38521 Davidia involucrata HOM05D000295 ORTHO05D000188 4.4e-10 67.4 45 75.6
Potri.015G084600 Populus trichocarpa HOM05D000295 ORTHO05D000188 4.4e-10 67.4 45 75.6
COL.COLO4_32206 Corchorus olitorius HOM05D000295 ORTHO05D000188 5.7e-10 67.0 45 75.6
Thecc.03G115700 Theobroma cacao HOM05D000295 ORTHO05D000188 9.7e-10 66.2 45 75.6
HanXRQChr05g0154191 Helianthus annuus HOM05D000295 ORTHO05D000188 1.3e-09 65.9 43 76.7
Rhsim08G0178300 Rhododendron simsii HOM05D000295 ORTHO05D000188 1.7e-09 65.5 45 73.3
Rhsim12G0168200 Rhododendron simsii HOM05D000295 ORTHO05D000188 1.7e-09 65.5 36 77.8
RcHm_v2.0_Chr7g0192481 Rosa chinensis HOM05D000295 ORTHO05D000188 1.7e-09 65.5 45 75.6
Actinidia16218 Actinidia chinensis HOM05D000295 ORTHO05D000188 2.8e-09 64.7 39 79.5
MSTRG.9694 Avicennia marina HOM05D000295 ORTHO05D000188 2.8e-09 64.7 45 75.6
Lsat_1_v5_gn_5_14401 Lactuca sativa HOM05D000295 ORTHO05D000188 2.8e-09 64.7 43 74.4
PGR083G0110 Punica granatum HOM05D000295 ORTHO05D000188 2.8e-09 64.7 45 71.1
GSVIVG01007637001 Vitis vinifera HOM05D000295 ORTHO05D000188 2.8e-09 64.7 45 73.3
QL10p006819 Quercus lobata HOM05D000295 ORTHO05D000188 3.7e-09 64.3 45 68.9
Hund09465 Selenicereus undatus HOM05D000295 ORTHO05D000188 3.7e-09 64.3 45 71.1
TWI23G0830 Tripterygium wilfordii HOM05D000295 ORTHO05D000188 3.7e-09 64.3 45 71.1
Gohir.A07G056400 Gossypium hirsutum HOM05D000295 ORTHO05D000188 4.8e-09 63.9 45 73.3
Gohir.D07G060700 Gossypium hirsutum HOM05D000295 ORTHO05D000188 4.8e-09 63.9 45 73.3
Gorai.001G064400 Gossypium raimondii HOM05D000295 ORTHO05D000188 4.8e-09 63.9 45 73.3
Nn3g16683 Nelumbo nucifera HOM05D000295 ORTHO05D000188 4.8e-09 63.9 45 73.3
vmacro16646 Vaccinium macrocarpon HOM05D000295 ORTHO05D000188 4.8e-09 63.9 40 72.5
Sabra12G0062100 Salix brachista HOM05D000295 ORTHO05D000188 8.2e-09 63.2 52 65.4
Atru.chr9.2589 Acer truncatum HOM05D000295 ORTHO05D000188 1.1e-08 62.8 45 73.3
AL5G27660 Arabidopsis lyrata HOM05D000295 ORTHO05D000188 1.1e-08 62.8 34 82.4
EL10Ac5g10646 Beta vulgaris HOM05D000295 ORTHO05D000188 1.4e-08 62.4 45 71.1
FvH4_5g06360 Fragaria vesca HOM05D000295 ORTHO05D000188 1.4e-08 62.4 39 79.5
FAN04G1485 Fragaria x ananassa HOM05D000295 ORTHO05D000188 1.4e-08 62.4 39 79.5
FAN08G0139 Fragaria x ananassa HOM05D000295 ORTHO05D000188 1.4e-08 62.4 39 79.5
FAN13G1288 Fragaria x ananassa HOM05D000295 ORTHO05D000188 1.4e-08 62.4 39 79.5
Sed0026130 Sechium edule HOM05D000295 ORTHO05D000188 1.4e-08 62.4 45 71.1
CsaV3_1G008870 Cucumis sativus L. HOM05D000295 ORTHO05D000188 1.8e-08 62.0 45 66.7
Gohir.A09G244300 Gossypium hirsutum HOM05D000295 ORTHO05D000188 1.8e-08 62.0 45 68.9
Gorai.006G269500 Gossypium raimondii HOM05D000295 ORTHO05D000188 1.8e-08 62.0 45 68.9
MD14G1170800 Malus domestica HOM05D000295 ORTHO05D000188 1.8e-08 62.0 45 68.9
Prupe.5G164900 Prunus persica HOM05D000295 ORTHO05D000188 1.8e-08 62.0 45 66.7
Hund02790 Selenicereus undatus HOM05D000295 ORTHO05D000188 1.8e-08 62.0 36 77.8
Carub.0005s1443 Capsella rubella HOM05D000295 ORTHO05D000188 2.4e-08 61.6 34 82.4
ClCG03G003030 Citrullus lanatus HOM05D000295 ORTHO05D000188 2.4e-08 61.6 54 57.4
ECA246G4520 Erigeron canadensis HOM05D000295 ORTHO05D000188 2.4e-08 61.6 40 75.0
Lsat_1_v5_gn_1_27540 Lactuca sativa HOM05D000295 ORTHO05D000188 2.4e-08 61.6 45 73.3
CBR_g40569 Chara braunii HOM05D000295 ORTHO05D000188 3.1e-08 61.2 41 68.3
arahy.Tifrunner.gnm1.ann1.7FUZ0V Arachis hypogaea HOM05D000295 ORTHO05D000188 4.1e-08 60.8 42 71.4
arahy.Tifrunner.gnm1.ann1.SG0BDG Arachis hypogaea HOM05D000295 ORTHO05D000188 4.1e-08 60.8 42 71.4
MELO3C002302.2 Cucumis melo HOM05D000295 ORTHO05D000188 4.1e-08 60.8 45 66.7
Eucgr.B00215 Eucalyptus grandis HOM05D000295 ORTHO05D000188 4.1e-08 60.8 45 68.9
VMungo1309G0932 Vigna mungo HOM05D000295 ORTHO05D000188 4.1e-08 60.8 40 77.5
CSS0011279 Camellia sinensis var. sinensis HOM05D000295 ORTHO05D000188 5.3e-08 60.5 45 73.3
Aqoxy5G03735 Aquilegia oxysepala HOM05D000295 ORTHO05D000188 6.9e-08 60.1 45 68.9
SEGI_37511 Sequoiadendron giganteum HOM05D000295 ORTHO05D000188 6.9e-08 60.1 45 62.2
Zm00001eb267090 Zea mays HOM05D000295 ORTHO05D000188 6.9e-08 60.1 35 74.3
Ah.11g051230 Amaranthus hybridus HOM05D000295 ORTHO05D000188 9.1e-08 59.7 45 71.1
Ca_16124_v3 Cicer arietinum L. HOM05D000295 ORTHO05D000188 9.1e-08 59.7 40 75.0
Ca_30301_v3 Cicer arietinum L. HOM05D000295 ORTHO05D000188 9.1e-08 59.7 40 75.0
Migut.O00164 Erythranthe guttata HOM05D000295 ORTHO05D000188 9.1e-08 59.7 45 66.7
Glyma.06G176800 Glycine max HOM05D000295 ORTHO05D000188 9.1e-08 59.7 40 75.0
MD06G1165300 Malus domestica HOM05D000295 ORTHO05D000188 9.1e-08 59.7 45 68.9
Psat5g116520 Pisum sativum HOM05D000295 ORTHO05D000188 9.1e-08 59.7 33 78.8
THA.LOC104809240 Tarenaya hassleriana HOM05D000295 ORTHO05D000188 9.1e-08 59.7 43 69.8
CDE04G0372 Ceratophyllum demersum HOM05D000295 ORTHO05D000188 1.2e-07 59.3 45 64.4
CDE07G1243 Ceratophyllum demersum HOM05D000295 ORTHO05D000188 1.2e-07 59.3 45 64.4
FAN18G0549 Fragaria x ananassa HOM05D000295 ORTHO05D000188 1.2e-07 59.3 53 60.4
TWI39G1146 Tripterygium wilfordii HOM05D000295 ORTHO05D000188 1.2e-07 59.3 45 71.1
Aa31LG4G16880 Aethionema arabicum HOM05D000295 ORTHO05D000188 1.5e-07 58.9 45 66.7
BcaB02g10662 Brassica carinata HOM05D000295 ORTHO05D000188 1.5e-07 58.9 34 76.5
BcaC01g02330 Brassica carinata HOM05D000295 ORTHO05D000188 1.5e-07 58.9 34 76.5
A06p27540 Brassica napus HOM05D000295 ORTHO05D000188 1.5e-07 58.9 34 76.5
C03p66500 Brassica napus HOM05D000295 ORTHO05D000188 1.5e-07 58.9 34 76.5
BolC3t18922H Brassica oleracea HOM05D000295 ORTHO05D000188 1.5e-07 58.9 34 76.5
BraA06t25695Z Brassica rapa HOM05D000295 ORTHO05D000188 1.5e-07 58.9 34 76.5
Lalb_Chr11g0070041 Lupinus albus HOM05D000295 ORTHO05D000188 1.5e-07 58.9 42 71.4
HPP92_008109 Vanilla planifolia HOM05D000295 ORTHO05D000188 1.5e-07 58.9 45 68.9
HPP92_008126 Vanilla planifolia HOM05D000295 ORTHO05D000188 1.5e-07 58.9 45 68.9
HanXRQChr04g0101341 Helianthus annuus HOM05D000295 ORTHO05D000188 2.0e-07 58.5 45 66.7
THA.LOC104806037 Tarenaya hassleriana HOM05D000295 ORTHO05D000188 2.0e-07 58.5 38 76.3
CARHR157020 Cardamine hirsuta HOM05D000295 ORTHO05D000188 2.6e-07 58.2 30 83.3
Lj1g0009323 Lotus japonicus HOM05D000295 ORTHO05D000188 2.6e-07 58.2 33 75.8
PGR031G3274 Punica granatum HOM05D000295 ORTHO05D000188 2.6e-07 58.2 34 73.5
Sp5g13770 Schrenkiella parvula HOM05D000295 ORTHO05D000188 2.6e-07 58.2 34 76.5
SMO276G0002 Selaginella moellendorffii HOM05D000295 ORTHO05D000188 2.6e-07 58.2 32 81.2
THA.LOC104821493 Tarenaya hassleriana HOM05D000295 ORTHO05D000188 2.6e-07 58.2 34 73.5
DCAR_016023 Daucus carota HOM05D000295 ORTHO05D000188 3.4e-07 57.8 36 75.0
AUR62008135 Chenopodium quinoa HOM05D000295 ORTHO05D000188 4.5e-07 57.4 45 66.7
Thhalv10010293m.g Eutrema salsugineum HOM05D000295 ORTHO05D000188 4.5e-07 57.4 34 73.5
CiPaw.12G031600 Carya illinoinensis HOM05D000295 ORTHO05D000188 5.9e-07 57.0 45 64.4
AUR62028717 Chenopodium quinoa HOM05D000295 ORTHO05D000188 5.9e-07 57.0 45 64.4
Glyma.04G188800 Glycine max HOM05D000295 ORTHO05D000188 7.7e-07 56.6 40 72.5
ATR0824G278 Amborella trichopoda HOM05D000295 ORTHO05D000188 1.3e-06 55.8 42 64.3
RcHm_v2.0_Chr7g0208181 Rosa chinensis HOM05D051710 ORTHO05D050727 1.3e-06 55.8 50 60.0
C02p16050 Brassica napus HOM05D000295 ORTHO05D000188 1.7e-06 55.5 41 68.3
CiPaw.11G019000 Carya illinoinensis HOM05D000295 ORTHO05D000188 1.7e-06 55.5 45 66.7
Medtr3g076650 Medicago truncatula HOM05D000295 ORTHO05D000188 1.7e-06 55.5 38 63.2
BolC2t07714H Brassica oleracea HOM05D000295 ORTHO05D000188 2.2e-06 55.1 41 68.3
Migut.M00024 Erythranthe guttata HOM05D000295 ORTHO05D000188 2.2e-06 55.1 41 65.9
BcaB01g04360 Brassica carinata HOM05D000295 ORTHO05D000188 2.9e-06 54.7 41 65.9
CANSAT54G2520 Cannabis sativa HOM05D000295 ORTHO05D000188 2.9e-06 54.7 36 75.0
SMO337G0044 Selaginella moellendorffii HOM05D000295 ORTHO05D000188 2.9e-06 54.7 33 72.7
CiPaw.11G200500 Carya illinoinensis HOM05D000295 ORTHO05D000188 3.8e-06 54.3 36 69.4
Lalb_Chr18g0045091 Lupinus albus HOM05D000295 ORTHO05D000188 3.8e-06 54.3 41 68.3
QL08p005567 Quercus lobata HOM05D000295 ORTHO05D000188 3.8e-06 54.3 36 69.4
SEGI_05007 Sequoiadendron giganteum HOM05D000295 ORTHO05D000188 3.8e-06 54.3 41 65.9
SEGI_33278 Sequoiadendron giganteum HOM05D000295 ORTHO05D000188 3.8e-06 54.3 41 65.9
Thecc.01G338600 Theobroma cacao HOM05D000295 ORTHO05D000188 3.8e-06 54.3 34 73.5
AUR62022730 Chenopodium quinoa HOM05D000295 ORTHO05D000188 5.0e-06 53.9 34 73.5
DCAR_030635 Daucus carota HOM05D000295 ORTHO05D000188 5.0e-06 53.9 36 75.0
PSO063G2165 Papaver somniferum HOM05D000295 ORTHO05D000188 5.0e-06 53.9 45 60.0
Pp3c2_7760 Physcomitrium patens HOM05D000295 ORTHO05D000188 5.0e-06 53.9 41 65.9
C07p40400 Brassica napus HOM05D000295 ORTHO05D000188 6.5e-06 53.5 39 71.8
BolC7t44575H Brassica oleracea HOM05D000295 ORTHO05D000188 6.5e-06 53.5 39 71.8
Manes.03G137500 Manihot esculenta HOM05D000295 ORTHO05D000188 6.5e-06 53.5 36 69.4
Pp3c2_7700 Physcomitrium patens HOM05D000295 ORTHO05D000188 6.5e-06 53.5 36 72.2
VMungo0720G0842 Vigna mungo HOM05D000295 ORTHO05D000188 6.5e-06 53.5 36 72.2
CANSAT11G1730 Cannabis sativa HOM05D000295 ORTHO05D000188 8.5e-06 53.1 34 73.5
AUR62017055 Chenopodium quinoa HOM05D000295 ORTHO05D000188 8.5e-06 53.1 40 67.5
ECA234G2408 Erigeron canadensis HOM05D000295 ORTHO05D000188 8.5e-06 53.1 34 67.6
Peaxi162Scf00285g00926 Petunia axillaris HOM05D000295 ORTHO05D000188 8.5e-06 53.1 36 72.2
SEGI_28000 Sequoiadendron giganteum HOM05D000295 ORTHO05D000188 8.5e-06 53.1 31 80.6
SEGI_30097 Sequoiadendron giganteum HOM05D000295 ORTHO05D000188 8.5e-06 53.1 31 80.6


User provided reference genes

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