Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 9.1e-162 573.5 296 100.0
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 1.4e-130 469.9 296 84.1
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 4.0e-109 398.7 316 70.9
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 2.5e-103 379.4 317 67.5
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 5.6e-103 378.3 312 70.2
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 2.5e-95 352.8 252 72.2
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 3.6e-94 349.0 300 63.7
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 6.2e-94 348.2 272 69.9
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 6.2e-94 348.2 272 69.9
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 1.4e-93 347.1 248 71.4
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 1.4e-93 347.1 297 66.3
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 3.1e-93 345.9 285 64.9
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 1.2e-92 344.0 286 66.8
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 2.0e-92 343.2 277 66.1
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 3.4e-92 342.4 221 81.9
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 4.9e-91 338.6 286 61.9
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 6.4e-91 338.2 301 61.8
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 1.4e-90 337.0 254 68.9
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 3.2e-90 335.9 294 61.9
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 3.2e-90 335.9 252 72.2
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 1.6e-89 333.6 252 71.8
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 1.6e-89 333.6 252 71.8
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 1.6e-89 333.6 266 65.8
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 2.7e-89 332.8 250 68.4
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 3.5e-89 332.4 250 69.2
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 4.6e-89 332.0 279 66.7
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 6.0e-89 331.6 262 67.2
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 6.0e-89 331.6 264 67.0
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 2.3e-88 329.7 270 68.1
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 5.1e-88 328.6 252 71.0
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 2.5e-87 326.2 294 60.5
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 2.5e-87 326.2 276 63.4
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 2.1e-86 323.2 267 67.0
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 3.6e-86 322.4 248 70.2
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 4.8e-86 322.0 254 68.9
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 6.2e-86 321.6 254 70.1
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 6.2e-86 321.6 257 69.3
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 1.1e-85 320.9 281 64.4
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 2.4e-85 319.7 260 65.4
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 2.4e-85 319.7 248 71.0
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 2.4e-85 319.7 250 70.0
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 4.0e-85 318.9 293 59.7
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 6.9e-85 318.2 270 65.6
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 5.8e-84 315.1 261 67.0
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 7.6e-84 314.7 261 67.4
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 7.6e-84 314.7 194 80.4
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 9.9e-84 314.3 295 59.3
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 2.2e-83 313.2 254 67.3
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 2.2e-83 313.2 248 68.1
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 6.4e-83 311.6 248 69.0
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 5.4e-82 308.5 245 69.4
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 9.3e-82 307.8 253 64.8
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 1.2e-81 307.4 245 69.0
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 1.2e-81 307.4 256 66.0
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 1.2e-81 307.4 250 68.4
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 1.6e-81 307.0 223 71.7
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 2.7e-81 306.2 283 61.1
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 3.5e-81 305.8 256 65.6
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 6.0e-81 305.1 246 63.8
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 3.0e-80 302.8 293 59.4
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 3.0e-80 302.8 277 61.7
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 6.7e-80 301.6 250 62.8
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 8.7e-80 301.2 270 62.2
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 8.7e-80 301.2 249 67.5
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.5e-79 300.4 254 65.4
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 1.9e-79 300.1 249 66.3
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 3.3e-79 299.3 246 67.1
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 4.3e-79 298.9 223 67.3
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 4.3e-79 298.9 252 64.3
SalBow6G3516 Salvia bowleyana HOM05D006234 ORTHO05D007813 5.6e-79 298.5 222 69.8
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 7.4e-79 298.1 247 66.0
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 1.6e-78 297.0 239 66.9
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.6e-78 297.0 239 66.9
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 2.1e-78 296.6 221 73.3
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 3.6e-78 295.8 255 64.3
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 8.1e-78 294.7 247 65.2
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 1.4e-77 293.9 247 65.2
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.4e-77 293.9 239 66.5
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 1.4e-77 293.9 247 64.8
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 4.0e-77 292.4 247 64.4
VMungo1309G2926 Vigna mungo HOM05D006234 ORTHO05D007813 1.2e-76 290.8 246 60.2
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 4.5e-76 288.9 242 64.9
Lj1g0005957 Lotus japonicus HOM05D006234 ORTHO05D007813 3.8e-75 285.8 294 56.1
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 8.4e-75 284.6 247 61.9
SalBow6G2400 Salvia bowleyana HOM05D006234 ORTHO05D007813 8.4e-75 284.6 248 64.5
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 2.7e-73 279.6 184 79.9
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 2.7e-73 279.6 249 57.8
Glyma.04G184400 Glycine max HOM05D006234 ORTHO05D007813 4.6e-73 278.9 252 59.9
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 1.3e-72 277.3 282 55.3
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 1.3e-72 277.3 184 73.4
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 1.1e-71 274.2 242 60.3
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 4.3e-71 272.3 294 52.0
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 4.3e-71 272.3 248 61.3
Os05g0170800 Oryza sativa ssp. japonica HOM05D006234 ORTHO05D007813 7.4e-71 271.6 247 58.7
TAR629G2947 Trochodendron aralioides HOM05D006234 ORTHO05D007813 2.1e-70 270.0 291 56.0
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 3.4e-68 262.7 301 53.2
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 3.4e-68 262.7 255 57.3
Zm00001eb124590 Zea mays HOM05D006234 ORTHO05D007813 4.2e-66 255.8 248 56.5
Nn3g16823 Nelumbo nucifera HOM05D006234 ORTHO05D007813 6.0e-65 251.9 288 51.0
Cpa.g.sc685.2 Carica papaya HOM05D006234 ORTHO05D007813 1.6e-62 243.8 179 68.7
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 4.8e-62 242.3 163 81.6
arahy.Tifrunner.gnm1.ann1.68I129 Arachis hypogaea HOM05D006234 ORTHO05D007813 1.5e-60 237.3 286 49.3
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 4.2e-58 229.2 270 51.9
Solyc12g021360.3 Solanum lycopersicum HOM05D006234 ORTHO05D007813 6.1e-57 225.3 147 83.7
Actinidia19103 Actinidia chinensis HOM05D006234 ORTHO05D007813 9.1e-53 211.5 155 69.0
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 2.2e-51 206.8 145 75.9
Aqoxy6G01962 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 3.0e-48 196.4 134 72.4
SalBow1G2571 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.8e-46 189.9 211 54.5
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 8.5e-43 178.3 259 44.0
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 8.0e-33 145.2 209 40.2
Psat5g000720 Pisum sativum HOM05D006234 ORTHO05D007813 4.0e-32 142.9 132 58.3
Ca_21933_v3 Cicer arietinum L. HOM05D000957 ORTHO05D000754 1.5e-31 141.0 110 69.1
SalBow8G5646 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.3e-30 137.9 205 43.9
ATR1091G013 Amborella trichopoda HOM05D006234 ORTHO05D007813 4.7e-25 119.4 97 62.9
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 6.1e-25 119.0 170 43.5
DCAR_026145 Daucus carota HOM05D007767 ORTHO05D010057 3.1e-21 106.7 109 62.4
SalBow1G3204 Salvia bowleyana HOM05D006234 ORTHO05D007813 4.5e-20 102.8 77 67.5
Lalb_Chr08g0236581 Lupinus albus HOM05D006234 ORTHO05D007813 2.6e-15 87.0 77 61.0
Lalb_Chr08g0236591 Lupinus albus HOM05D006234 ORTHO05D007813 2.6e-15 87.0 97 49.5
Actinidia19102 Actinidia chinensis HOM05D006234 ORTHO05D007813 2.2e-14 84.0 68 70.6
Cre09.g387134 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 8.3e-14 82.0 166 30.7
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 1.2e-12 78.2 105 40.0
arahy.Tifrunner.gnm1.ann1.AH97YV Arachis hypogaea HOM05D006234 ORTHO05D007813 7.3e-10 68.9 88 44.3
RcHm_v2.0_Chr6g0279701 Rosa chinensis HOM05D006234 ORTHO05D007813 4.7e-09 66.2 60 56.7
SalBow6G1357 Salvia bowleyana HOM05D003575 ORTHO05D003587 1.0e-08 65.1 44 72.7
SalBow3G0890 Salvia bowleyana HOM05D001251 ORTHO05D007813 4.4e-07 59.7 30 90.0


User provided reference genes

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