Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401026419 Solanum tuberosum HOM05D002342 ORTHO05D002407 1.9e-83 312.8 199 100.0
Nitab4.5_0000401g0100 Nicotiana tabacum HOM05D002342 ORTHO05D002407 1.7e-26 123.6 141 52.5
Dinv27218 Davidia involucrata HOM05D002342 ORTHO05D002407 4.9e-18 95.5 110 50.9
Lj6A516T56 Lonicera japonica HOM05D002342 ORTHO05D002407 8.3e-18 94.7 128 45.3
Lj6C526T4 Lonicera japonica HOM05D002342 ORTHO05D002407 1.1e-17 94.4 123 48.0
Prupe.1G159200 Prunus persica HOM05D002342 ORTHO05D002407 1.8e-17 93.6 132 42.4
Lj6C522G10 Lonicera japonica HOM05D002342 ORTHO05D002407 3.2e-17 92.8 111 49.5
Manes.03G146000 Manihot esculenta HOM05D002342 ORTHO05D002407 7.0e-17 91.7 66 65.2
MD04G1012900 Malus domestica HOM05D002342 ORTHO05D002407 1.6e-16 90.5 133 40.6
Nn1g07933 Nelumbo nucifera HOM05D002342 ORTHO05D002407 4.6e-16 89.0 113 46.9
Lj6C516T2 Lonicera japonica HOM05D002342 ORTHO05D002407 7.8e-16 88.2 65 67.7
CANSAT78G2520 Cannabis sativa HOM05D002342 ORTHO05D002407 1.0e-15 87.8 129 41.1
Lj6P517T17 Lonicera japonica HOM05D002342 ORTHO05D002407 1.0e-15 87.8 123 47.2
Sopen09g034970 Solanum pennellii HOM05D002342 ORTHO05D002407 1.0e-15 87.8 94 50.0
vmacro00456 Vaccinium macrocarpon HOM05D002342 ORTHO05D002407 2.3e-15 86.7 136 42.6
GSVIVG01020920001 Vitis vinifera HOM05D002342 ORTHO05D002407 2.3e-15 86.7 66 63.6
CSS0000956 Camellia sinensis var. sinensis HOM05D002342 ORTHO05D002407 3.9e-15 85.9 66 63.6
CiPaw.01G119200 Carya illinoinensis HOM05D002342 ORTHO05D002407 3.9e-15 85.9 159 37.1
ECA233G4700 Erigeron canadensis HOM05D002342 ORTHO05D002407 3.9e-15 85.9 61 68.9
Rhsim09G0058500 Rhododendron simsii HOM05D002342 ORTHO05D002407 3.9e-15 85.9 62 67.7
RcHm_v2.0_Chr4g0414341 Rosa chinensis HOM05D002342 ORTHO05D002407 3.9e-15 85.9 146 38.4
Lj6A526G34 Lonicera japonica HOM05D002342 ORTHO05D002407 5.0e-15 85.5 106 48.1
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 6.6e-15 85.1 162 37.0
Haze_11629 Corylus avellana HOM05D002342 ORTHO05D002407 6.6e-15 85.1 69 58.0
DCAR_002789 Daucus carota HOM05D002342 ORTHO05D002407 6.6e-15 85.1 147 46.3
DCAR_030811 Daucus carota HOM05D002342 ORTHO05D002407 6.6e-15 85.1 193 41.5
Lsat_1_v5_gn_6_60921 Lactuca sativa HOM05D002342 ORTHO05D002407 6.6e-15 85.1 62 66.1
RcHm_v2.0_Chr6g0275261 Rosa chinensis HOM05D002342 ORTHO05D002407 6.6e-15 85.1 148 40.5
Oeu055768.2 Olea europaea HOM05D002342 ORTHO05D002407 1.1e-14 84.3 123 43.1
Eucgr.H02758 Eucalyptus grandis HOM05D002342 ORTHO05D002407 2.5e-14 83.2 69 55.1
FAN15G0433 Fragaria x ananassa HOM05D002342 ORTHO05D002407 2.5e-14 83.2 125 41.6
FAN24G1108 Fragaria x ananassa HOM05D002342 ORTHO05D002407 2.5e-14 83.2 136 41.2
PGR083G1386 Punica granatum HOM05D002342 ORTHO05D002407 2.5e-14 83.2 147 36.7
Migut.N00402 Erythranthe guttata HOM05D002342 ORTHO05D002407 7.3e-14 81.6 159 37.7
Eucgr.H02752 Eucalyptus grandis HOM05D002342 ORTHO05D002407 7.3e-14 81.6 69 53.6
QL05p014269 Quercus lobata HOM05D002342 ORTHO05D002407 7.3e-14 81.6 62 62.9
SHI00028 Sapria himalayana HOM05D002342 ORTHO05D002407 7.3e-14 81.6 127 41.7
CAN.G1333.6 Capsicum annuum HOM05D002342 ORTHO05D002407 9.5e-14 81.3 55 67.3
Cpa.g.c27575.1 Carica papaya HOM05D002342 ORTHO05D002407 9.5e-14 81.3 123 43.9
Actinidia23411 Actinidia chinensis HOM05D002342 ORTHO05D002407 1.6e-13 80.5 67 55.2
arahy.Tifrunner.gnm1.ann1.ZGTC82 Arachis hypogaea HOM05D002342 ORTHO05D002407 1.6e-13 80.5 139 40.3
Dinv38212 Davidia involucrata HOM05D002342 ORTHO05D002407 2.1e-13 80.1 159 38.4
Migut.G00912 Erythranthe guttata HOM05D002342 ORTHO05D002407 2.1e-13 80.1 134 40.3
Hma1.2p1_0383F.1_g140360 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 2.1e-13 80.1 139 38.8
FAN17G0157 Fragaria x ananassa HOM05D002342 ORTHO05D002407 2.8e-13 79.7 117 49.6
SGA_v2.0_scaffold31G12585 Striga asiatica HOM05D002342 ORTHO05D002407 2.8e-13 79.7 154 37.0
Duzib212G0344 Durio zibethinus HOM05D002342 ORTHO05D002407 3.6e-13 79.3 126 39.7
Sc13g0000230 Simmondsia chinensis HOM05D002342 ORTHO05D002407 3.6e-13 79.3 62 56.5
Lalb_Chr12g0205531 Lupinus albus HOM05D002342 ORTHO05D002407 4.7e-13 79.0 66 59.1
MBI04_g21151_MAGBIO Magnolia biondii HOM05D002342 ORTHO05D002407 4.7e-13 79.0 66 54.5
QL05p014602 Quercus lobata HOM05D002342 ORTHO05D002407 4.7e-13 79.0 62 59.7
FvH4_2g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 8.0e-13 78.2 142 40.1
MD04G1013300 Malus domestica HOM05D002342 ORTHO05D002407 8.0e-13 78.2 121 41.3
ClCG05G003260 Citrullus lanatus HOM05D002342 ORTHO05D002407 1.1e-12 77.8 64 51.6
CsaV3_3G010890 Cucumis sativus L. HOM05D002342 ORTHO05D002407 1.1e-12 77.8 145 33.8
HanXRQChr02g0059031 Helianthus annuus HOM05D002342 ORTHO05D002407 1.1e-12 77.8 117 40.2
Hma1.2p1_0383F.1_g140570 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 1.8e-12 77.0 123 47.2
Lj4g0001754 Lotus japonicus HOM05D002342 ORTHO05D002407 1.8e-12 77.0 146 38.4
Hund05344 Selenicereus undatus HOM05D002342 ORTHO05D002407 1.8e-12 77.0 103 43.7
TAR365G0690 Trochodendron aralioides HOM05D002342 ORTHO05D002407 1.8e-12 77.0 66 54.5
Ca_17971_v3 Cicer arietinum L. HOM05D002342 ORTHO05D002407 2.3e-12 76.6 60 58.3
TWI09G0668 Tripterygium wilfordii HOM05D002342 ORTHO05D002407 3.1e-12 76.3 62 56.5
TAR365G0670 Trochodendron aralioides HOM05D002342 ORTHO05D002407 3.1e-12 76.3 134 37.3
AL7G42760 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 4.0e-12 75.9 64 56.2
Aqoxy2G03980 Aquilegia oxysepala HOM05D002342 ORTHO05D002407 5.2e-12 75.5 127 38.6
Ciclev10004121m.g Citrus clementina HOM05D002342 ORTHO05D002407 5.2e-12 75.5 66 51.5
AUR62018583 Chenopodium quinoa HOM05D002342 ORTHO05D002407 6.8e-12 75.1 66 54.5
QL05p014243 Quercus lobata HOM05D002342 ORTHO05D002407 6.8e-12 75.1 62 56.5
QL05p014435 Quercus lobata HOM05D002342 ORTHO05D002407 6.8e-12 75.1 62 56.5
Sed0020750 Sechium edule HOM05D002342 ORTHO05D002407 6.8e-12 75.1 66 53.0
Carub.0007s2871 Capsella rubella HOM05D002342 ORTHO05D002407 8.9e-12 74.7 64 56.2
Cfa014941 Carpinus fangiana HOM05D002342 ORTHO05D002407 8.9e-12 74.7 66 53.0
Haze_11626 Corylus avellana HOM05D002342 ORTHO05D002407 8.9e-12 74.7 124 37.1
HanXRQChr16g0498001 Helianthus annuus HOM05D002342 ORTHO05D002407 8.9e-12 74.7 132 37.1
CARHR008150 Cardamine hirsuta HOM05D002342 ORTHO05D002407 1.2e-11 74.3 99 43.4
Potri.001G317200 Populus trichocarpa HOM05D002342 ORTHO05D002407 1.2e-11 74.3 70 52.9
Zm00001eb061370 Zea mays HOM05D002342 ORTHO05D002407 1.2e-11 74.3 69 50.7
AT4G13750 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 1.5e-11 73.9 64 56.2
AUR62020836 Chenopodium quinoa HOM05D002342 ORTHO05D002407 1.5e-11 73.9 144 37.5
Peaxi162Scf00047g00342 Petunia axillaris HOM05D002342 ORTHO05D002407 1.5e-11 73.9 142 44.4
PSO017G5596 Papaver somniferum HOM05D002342 ORTHO05D002407 2.0e-11 73.6 66 53.0
TPR.G11869 Trifolium pratense HOM05D002342 ORTHO05D002407 2.0e-11 73.6 62 56.5
Lj6C524T11 Lonicera japonica HOM05D002342 ORTHO05D002407 2.6e-11 73.2 57 63.2
Sabra16G0200600 Salix brachista HOM05D002342 ORTHO05D002407 2.6e-11 73.2 70 52.9
Cc03_g08030 Coffea canephora HOM05D002342 ORTHO05D002407 3.4e-11 72.8 204 38.2
Migut.N01843 Erythranthe guttata HOM05D002342 ORTHO05D002407 3.4e-11 72.8 68 51.5
QL05p014183 Quercus lobata HOM05D002342 ORTHO05D002407 3.4e-11 72.8 58 60.3
Glyma.08G111400 Glycine max HOM05D002342 ORTHO05D002407 4.4e-11 72.4 60 56.7
Lsat_1_v5_gn_6_60880 Lactuca sativa HOM05D002342 ORTHO05D002407 4.4e-11 72.4 69 50.7
Medtr8g085280 Medicago truncatula HOM05D002342 ORTHO05D002407 5.8e-11 72.0 62 56.5
PSO063G4028 Papaver somniferum HOM05D002342 ORTHO05D002407 5.8e-11 72.0 161 36.0
Thhalv10024181m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 7.5e-11 71.6 64 50.0
MD04G1012800 Malus domestica HOM05D002342 ORTHO05D002407 7.5e-11 71.6 66 53.0
BcaB04g17657 Brassica carinata HOM05D002342 ORTHO05D002407 9.8e-11 71.2 64 50.0
ECA233G6204 Erigeron canadensis HOM05D002342 ORTHO05D002407 9.8e-11 71.2 61 57.4
THA.LOC104804807 Tarenaya hassleriana HOM05D002342 ORTHO05D002407 9.8e-11 71.2 64 53.1
Atru.chr4.1618 Acer truncatum HOM05D002342 ORTHO05D002407 1.3e-10 70.9 66 47.0
Psat7g074440 Pisum sativum HOM05D002342 ORTHO05D002407 1.3e-10 70.9 60 58.3
Aa31LG9G3890 Aethionema arabicum HOM05D002342 ORTHO05D002407 1.7e-10 70.5 64 54.7
Sp7g11520 Schrenkiella parvula HOM05D002342 ORTHO05D002407 1.7e-10 70.5 64 50.0
A06p05320 Brassica napus HOM05D002342 ORTHO05D002407 2.2e-10 70.1 124 36.3
Atru.chr4.1623 Acer truncatum HOM05D002342 ORTHO05D002407 2.9e-10 69.7 66 45.5
BcaC07g37335 Brassica carinata HOM05D002342 ORTHO05D002407 2.9e-10 69.7 64 48.4
C08p07740 Brassica napus HOM05D002342 ORTHO05D002407 2.9e-10 69.7 64 48.4
BolC8t47622H Brassica oleracea HOM05D002342 ORTHO05D002407 2.9e-10 69.7 64 48.4
BraA08t32682Z Brassica rapa HOM05D002342 ORTHO05D002407 2.9e-10 69.7 64 48.4
Gohir.D02G113900 Gossypium hirsutum HOM05D002342 ORTHO05D002407 3.7e-10 69.3 163 34.4
Phvul.003G291200 Phaseolus vulgaris HOM05D002342 ORTHO05D002407 3.7e-10 69.3 69 50.7
RcHm_v2.0_Chr4g0414351 Rosa chinensis HOM05D002342 ORTHO05D002407 3.7e-10 69.3 127 35.4
AT1G08300 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 8.3e-10 68.2 119 33.6
A08p06660 Brassica napus HOM05D002342 ORTHO05D002407 8.3e-10 68.2 64 48.4
CARHR219530 Cardamine hirsuta HOM05D002342 ORTHO05D002407 8.3e-10 68.2 62 48.4
MELO3C006307.2 Cucumis melo HOM05D002342 ORTHO05D002407 1.1e-09 67.8 68 44.1
HPP92_003883 Vanilla planifolia HOM05D002342 ORTHO05D002407 1.4e-09 67.4 61 50.8
Gorai.005G129600 Gossypium raimondii HOM05D002342 ORTHO05D002407 1.9e-09 67.0 163 32.5
Thecc.04G199700 Theobroma cacao HOM05D002342 ORTHO05D002407 2.4e-09 66.6 159 32.1
Os03g0803800 Oryza sativa ssp. japonica HOM05D002342 ORTHO05D002407 3.2e-09 66.2 62 46.8
Prupe.1G159100 Prunus persica HOM05D002342 ORTHO05D002407 3.2e-09 66.2 154 37.0
AL1G18700 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 4.1e-09 65.9 120 34.2
BraA06t23740Z Brassica rapa HOM05D002342 ORTHO05D002407 4.1e-09 65.9 124 37.1
HanXRQChr11g0339061 Helianthus annuus HOM05D002342 ORTHO05D002407 4.1e-09 65.9 64 50.0
VMungo1127G1482 Vigna mungo HOM05D002342 ORTHO05D002407 5.4e-09 65.5 135 34.8
Migut.N01844 Erythranthe guttata HOM05D002342 ORTHO05D002407 7.0e-09 65.1 63 50.8
unitig_8.g4999 Utricularia gibba HOM05D002342 ORTHO05D002407 9.2e-09 64.7 144 35.4
FvH4_4g13660 Fragaria vesca HOM05D002342 ORTHO05D002407 1.2e-08 64.3 147 32.7
Gohir.A03G095600 Gossypium hirsutum HOM05D002342 ORTHO05D002407 1.6e-08 63.9 155 31.6
FAN07G2373 Fragaria x ananassa HOM05D002342 ORTHO05D002407 2.0e-08 63.5 143 30.8
FAN22G0412 Fragaria x ananassa HOM05D002342 ORTHO05D002407 2.0e-08 63.5 177 31.1
Atru.chr4.1628 Acer truncatum HOM05D002342 ORTHO05D002407 3.5e-08 62.8 68 45.6
Carub.0001s0765 Capsella rubella HOM05D002342 ORTHO05D002407 3.5e-08 62.8 121 32.2
SEGI_11248 Sequoiadendron giganteum HOM05D002342 ORTHO05D002407 4.6e-08 62.4 66 39.4
Ah.14g086370 Amaranthus hybridus HOM05D002342 ORTHO05D002407 6.0e-08 62.0 149 30.2
BcaB07g34075 Brassica carinata HOM05D002342 ORTHO05D002407 6.0e-08 62.0 71 45.1
BolC5t29395H Brassica oleracea HOM05D002342 ORTHO05D002407 7.8e-08 61.6 134 34.3
Sp1g06930 Schrenkiella parvula HOM05D002342 ORTHO05D002407 7.8e-08 61.6 63 47.6
BcaB07g34076 Brassica carinata HOM05D000444 ORTHO05D000489 1.7e-07 60.5 133 33.8
C05p06400 Brassica napus HOM05D002342 ORTHO05D002407 1.7e-07 60.5 134 34.3
COL.COLO4_20180 Corchorus olitorius HOM05D002342 ORTHO05D002407 1.7e-07 60.5 67 41.8
PSO017G1666 Papaver somniferum HOM05D002342 ORTHO05D002407 2.3e-07 60.1 139 30.9
PSO063G7363 Papaver somniferum HOM05D002342 ORTHO05D002407 3.9e-07 59.3 150 30.0
Thhalv10006953m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 8.6e-07 58.2 64 45.3


User provided reference genes

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