Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 6.3e-140 500.7 250 100.0
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 7.0e-131 470.7 250 94.8
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 3.8e-129 464.9 251 93.6
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 2.8e-111 405.6 278 78.1
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 1.1e-88 330.5 251 67.3
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.4e-86 323.6 251 69.3
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 3.1e-86 322.4 241 68.9
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 5.2e-86 321.6 258 67.1
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 1.1e-83 313.9 235 68.9
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.7e-82 309.3 235 68.5
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 6.0e-82 308.1 267 63.7
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 5.6e-80 301.6 238 66.0
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 1.6e-79 300.1 238 66.0
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.3e-78 295.0 231 70.6
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 1.5e-77 293.5 241 63.1
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 5.8e-77 291.6 241 63.1
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 4.9e-76 288.5 230 63.9
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 8.4e-76 287.7 198 74.2
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 2.1e-74 283.1 251 61.8
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 1.0e-73 280.8 247 62.8
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 1.3e-73 280.4 237 63.7
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 6.7e-73 278.1 235 62.6
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 1.1e-72 277.3 251 61.0
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 7.4e-72 274.6 243 62.1
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 9.6e-72 274.2 239 60.3
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.3e-71 273.9 170 84.7
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 6.2e-71 271.6 219 63.0
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 1.1e-70 270.8 211 64.9
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 1.1e-70 270.8 249 60.2
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 1.1e-70 270.8 249 60.2
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 1.1e-70 270.8 184 73.4
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 3.1e-70 269.2 249 59.8
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 4.0e-70 268.9 237 61.6
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 6.9e-70 268.1 207 65.7
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 9.0e-70 267.7 259 57.1
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 2.0e-69 266.5 247 57.9
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 3.4e-69 265.8 242 57.4
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 3.4e-69 265.8 214 65.0
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 9.9e-69 264.2 247 57.1
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 9.9e-69 264.2 228 59.6
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 9.9e-69 264.2 244 57.4
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 1.3e-68 263.8 250 56.4
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 1.3e-68 263.8 198 69.7
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 3.8e-68 262.3 212 64.6
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 8.4e-68 261.2 199 66.3
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.9e-67 260.0 241 60.2
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 2.4e-67 259.6 182 70.9
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 3.2e-67 259.2 213 59.6
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 3.2e-67 259.2 238 59.2
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 3.2e-67 259.2 237 57.4
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 3.2e-67 259.2 222 61.7
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 4.2e-67 258.8 237 57.8
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.2e-66 257.3 185 70.3
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 1.2e-66 257.3 187 70.6
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 1.2e-66 257.3 227 59.9
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 1.6e-66 256.9 244 59.4
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 2.7e-66 256.1 248 57.3
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 4.6e-66 255.4 244 57.0
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 4.6e-66 255.4 248 55.6
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 7.9e-66 254.6 224 59.4
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 1.0e-65 254.2 221 60.6
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 1.0e-65 254.2 221 60.6
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 1.3e-65 253.8 187 69.0
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 2.3e-65 253.1 205 62.0
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 3.0e-65 252.7 178 70.8
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 3.0e-65 252.7 224 59.4
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 3.9e-65 252.3 208 62.5
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 5.1e-65 251.9 241 55.6
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 5.1e-65 251.9 241 55.6
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 5.1e-65 251.9 224 58.9
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 5.1e-65 251.9 224 59.4
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 1.1e-64 250.8 220 61.4
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 1.1e-64 250.8 184 67.4
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.5e-64 250.4 242 57.4
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 1.9e-64 250.0 212 60.4
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 3.3e-64 249.2 252 55.6
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 9.6e-64 247.7 193 65.3
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 1.3e-63 247.3 150 80.7
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.6e-63 246.9 237 58.6
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 2.8e-63 246.1 234 57.3
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 8.1e-63 244.6 180 67.8
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 1.1e-62 244.2 225 56.9
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 1.1e-62 244.2 245 54.7
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 1.4e-62 243.8 196 61.7
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 1.8e-62 243.4 150 79.3
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 2.4e-62 243.0 245 54.7
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 4.0e-62 242.3 250 55.2
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 5.3e-62 241.9 235 53.6
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 6.9e-62 241.5 192 63.5
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 9.0e-62 241.1 241 53.9
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 9.0e-62 241.1 244 56.1
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 1.2e-61 240.7 241 58.5
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 1.2e-61 240.7 244 53.7
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 1.5e-61 240.4 203 63.5
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 2.0e-61 240.0 243 53.1
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.4e-61 239.2 207 60.4
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 5.8e-61 238.4 186 63.4
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 1.0e-60 237.7 241 53.5
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 1.3e-60 237.3 178 68.5
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 2.2e-60 236.5 242 53.7
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 3.8e-60 235.7 240 51.2
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 6.5e-60 235.0 198 57.1
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 6.5e-60 235.0 150 77.3
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 1.1e-59 234.2 242 51.2
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 1.1e-59 234.2 143 79.0
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 1.4e-59 233.8 239 51.5
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 2.5e-59 233.0 179 62.6
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 3.2e-59 232.6 242 53.7
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 3.2e-59 232.6 247 51.0
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 7.1e-59 231.5 236 55.9
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 9.3e-59 231.1 147 78.9
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 1.6e-58 230.3 157 71.3
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 3.5e-58 229.2 240 52.5
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 3.5e-58 229.2 229 55.5
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 7.9e-58 228.0 245 51.8
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 7.9e-58 228.0 154 74.0
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 1.3e-57 227.3 157 70.1
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 1.8e-57 226.9 165 70.3
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 2.5e-56 223.0 174 63.2
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 9.6e-56 221.1 208 54.8
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 1.3e-52 210.7 148 68.2
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 2.2e-52 209.9 182 62.6
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 2.7e-50 203.0 219 51.6
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 7.9e-50 201.4 202 58.4
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 5.1e-49 198.7 119 79.8
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 3.7e-47 192.6 207 56.5
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 4.8e-47 192.2 151 62.9
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 2.6e-45 186.4 139 64.0
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 3.4e-45 186.0 141 62.4
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 1.0e-44 184.5 149 58.4
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.3e-44 184.1 199 50.8
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 1.7e-44 183.7 196 52.6
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 1.4e-43 180.6 201 53.2
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 1.2e-42 177.6 139 57.6
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 1.5e-40 170.6 238 45.4
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 2.0e-40 170.2 137 63.5
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.6e-40 169.9 222 43.2
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 2.4e-38 163.3 126 70.6
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 1.7e-36 157.1 130 63.8
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 3.8e-36 156.0 240 40.4
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 1.2e-34 151.0 150 57.3
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 1.0e-28 131.3 147 50.3
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 5.5e-27 125.6 169 47.3
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 9.7e-24 114.8 161 45.3
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 2.4e-22 110.2 138 42.8
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 2.0e-21 107.1 79 63.3
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 6.8e-17 92.0 152 34.9
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 5.7e-16 89.0 131 36.6
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 5.4e-14 82.4 131 38.9
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 9.1e-14 81.6 152 33.6
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.5e-13 79.7 97 43.3
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 4.2e-11 72.8 150 33.3
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 3.6e-10 69.7 122 32.0
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.7e-10 69.3 82 50.0
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 6.8e-09 65.5 83 47.0
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 8.8e-09 65.1 126 29.4


User provided reference genes

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