Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401026018 Solanum tuberosum HOM05D006102 ORTHO05D007550 2.2e-120 435.6 216 100.0
Sopen01g036600 Solanum pennellii HOM05D006102 ORTHO05D007550 4.3e-113 411.4 207 96.6
Solyc01g090860.3 Solanum lycopersicum HOM05D006102 ORTHO05D007550 9.4e-100 367.1 186 96.2
Nitab4.5_0000859g0180 Nicotiana tabacum HOM05D006102 ORTHO05D007550 2.0e-97 359.4 211 87.2
Nitab4.5_0011151g0030 Nicotiana tabacum HOM05D006102 ORTHO05D007550 4.4e-97 358.2 212 86.8
Peaxi162Scf00803g00223 Petunia axillaris HOM05D006102 ORTHO05D007550 7.7e-94 347.4 208 84.1
CAN.G1872.3 Capsicum annuum HOM05D006102 ORTHO05D007550 1.3e-93 346.7 207 82.1
Dinv43669 Davidia involucrata HOM05D006102 ORTHO05D007550 2.3e-74 282.7 208 66.8
CSS0002341 Camellia sinensis var. sinensis HOM05D006102 ORTHO05D007550 4.0e-74 282.0 207 67.6
Atru.chr5.236 Acer truncatum HOM05D006102 ORTHO05D007550 2.0e-73 279.6 207 67.1
MD07G1115100 Malus domestica HOM05D006102 ORTHO05D007550 1.7e-72 276.6 208 65.4
RcHm_v2.0_Chr1g0349071 Rosa chinensis HOM05D006102 ORTHO05D007550 2.2e-72 276.2 207 64.7
COL.COLO4_12485 Corchorus olitorius HOM05D006102 ORTHO05D007550 2.9e-72 275.8 209 66.0
Thecc.01G384200 Theobroma cacao HOM05D006102 ORTHO05D007550 8.3e-72 274.2 209 65.6
Duzib138G0330 Durio zibethinus HOM05D006102 ORTHO05D007550 1.1e-71 273.9 209 64.6
Lj7A537G47 Lonicera japonica HOM05D006102 ORTHO05D007550 3.2e-71 272.3 209 65.1
Ciclev10018476m.g Citrus clementina HOM05D006102 ORTHO05D007550 9.2e-71 270.8 207 65.7
CANSAT56G2478 Cannabis sativa HOM05D006102 ORTHO05D007550 2.0e-70 269.6 206 65.5
Gohir.D11G083100 Gossypium hirsutum HOM05D006102 ORTHO05D007550 2.0e-70 269.6 207 63.3
Gorai.007G088700 Gossypium raimondii HOM05D006102 ORTHO05D007550 2.0e-70 269.6 207 63.3
Gohir.A11G078500 Gossypium hirsutum HOM05D006102 ORTHO05D007550 7.8e-70 267.7 207 62.8
CiPaw.14G025500 Carya illinoinensis HOM05D006102 ORTHO05D007550 1.0e-69 267.3 206 63.6
Prupe.2G137200 Prunus persica HOM05D006102 ORTHO05D007550 2.5e-68 262.7 208 61.5
Cfa011148 Carpinus fangiana HOM05D006102 ORTHO05D007550 4.3e-68 261.9 207 61.8
Sabra14G0046000 Salix brachista HOM05D006102 ORTHO05D007550 4.3e-68 261.9 206 63.1
QL04p037175 Quercus lobata HOM05D006102 ORTHO05D007550 1.6e-67 260.0 207 63.3
vmacro13446 Vaccinium macrocarpon HOM05D006102 ORTHO05D007550 2.1e-67 259.6 206 65.0
Rhsim07G0031600 Rhododendron simsii HOM05D006102 ORTHO05D007550 2.8e-67 259.2 204 63.2
Potri.014G066000 Populus trichocarpa HOM05D006102 ORTHO05D007550 3.6e-67 258.8 206 63.1
TWI59G0915 Tripterygium wilfordii HOM05D006102 ORTHO05D007550 4.7e-67 258.5 209 62.2
Cpa.g.sc49.147 Carica papaya HOM05D006102 ORTHO05D007550 1.0e-66 257.3 209 61.2
CsaV3_3G007350 Cucumis sativus L. HOM05D006102 ORTHO05D007550 1.0e-66 257.3 207 59.4
Eucgr.D02494 Eucalyptus grandis HOM05D006102 ORTHO05D007550 5.2e-66 255.0 209 61.7
CARHR248110 Cardamine hirsuta HOM05D006102 ORTHO05D007550 1.5e-65 253.4 207 59.4
FAN03G1880 Fragaria x ananassa HOM05D006102 ORTHO05D007550 2.0e-65 253.1 208 60.1
FAN06G2296 Fragaria x ananassa HOM05D006102 ORTHO05D007550 3.4e-65 252.3 208 59.6
THA.LOC104801481 Tarenaya hassleriana HOM05D006102 ORTHO05D007550 3.4e-65 252.3 207 59.4
AL6G53450 Arabidopsis lyrata HOM05D006102 ORTHO05D007550 4.4e-65 251.9 207 58.9
FAN06G2175 Fragaria x ananassa HOM05D006102 ORTHO05D007550 4.4e-65 251.9 208 59.6
TAR375G0254 Trochodendron aralioides HOM05D006102 ORTHO05D007550 5.8e-65 251.5 207 59.4
Nn1g00999 Nelumbo nucifera HOM05D006102 ORTHO05D007550 7.5e-65 251.1 207 60.4
VMungo0331G1545 Vigna mungo HOM05D006102 ORTHO05D007550 8.3e-64 247.7 210 58.6
Ca_19854_v3 Cicer arietinum L. HOM05D006102 ORTHO05D007550 1.4e-63 246.9 207 58.9
Aa31LG5G130 Aethionema arabicum HOM05D006102 ORTHO05D007550 1.9e-63 246.5 207 58.0
Oeu032185.2 Olea europaea HOM05D006102 ORTHO05D007550 1.9e-63 246.5 212 59.0
AT4G00060 Arabidopsis thaliana HOM05D006102 ORTHO05D007550 2.4e-63 246.1 207 58.0
HanXRQChr03g0093281 Helianthus annuus HOM05D006102 ORTHO05D007550 2.4e-63 246.1 211 60.2
Lsat_1_v5_gn_3_129280 Lactuca sativa HOM05D006102 ORTHO05D007550 4.1e-63 245.4 209 60.8
FAN10G3138 Fragaria x ananassa HOM05D006102 ORTHO05D007550 5.4e-63 245.0 208 57.7
Phvul.010G071832 Phaseolus vulgaris HOM05D006102 ORTHO05D007550 5.4e-63 245.0 207 58.5
Migut.N01612 Erythranthe guttata HOM05D006102 ORTHO05D007550 7.0e-63 244.6 208 58.7
Glyma.03G032900 Glycine max HOM05D006102 ORTHO05D007550 1.2e-62 243.8 208 59.1
FAN10G3898 Fragaria x ananassa HOM05D006102 ORTHO05D007550 2.7e-62 242.7 208 57.2
Lalb_Chr07g0190291 Lupinus albus HOM05D006102 ORTHO05D007550 2.7e-62 242.7 207 57.5
Carub.0006s3716 Capsella rubella HOM05D006102 ORTHO05D007550 3.5e-62 242.3 212 57.1
PGR004G2833 Punica granatum HOM05D006102 ORTHO05D007550 6.0e-62 241.5 208 57.7
Sp6g00130 Schrenkiella parvula HOM05D006102 ORTHO05D007550 6.0e-62 241.5 207 57.0
Thhalv10028362m.g Eutrema salsugineum HOM05D006102 ORTHO05D007550 3.0e-61 239.2 207 56.5
Lj3g0012088 Lotus japonicus HOM05D006102 ORTHO05D007550 6.6e-61 238.0 207 54.6
TPR.G4985 Trifolium pratense HOM05D006102 ORTHO05D007550 6.6e-61 238.0 208 56.7
A03p27130 Brassica napus HOM05D006102 ORTHO05D007550 1.5e-60 236.9 208 57.2
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 1.9e-60 236.5 208 57.7
MSTRG.28175 Avicennia marina HOM05D006102 ORTHO05D007550 4.3e-60 235.3 210 57.6
Aqoxy7G00755 Aquilegia oxysepala HOM05D006102 ORTHO05D007550 5.6e-60 235.0 207 58.9
Sc02g0002820 Simmondsia chinensis HOM05D006102 ORTHO05D007550 5.6e-60 235.0 202 59.4
BcaC01g04890 Brassica carinata HOM05D006102 ORTHO05D007550 7.3e-60 234.6 208 56.7
C03p32590 Brassica napus HOM05D006102 ORTHO05D007550 7.3e-60 234.6 208 56.7
BraA03t11926Z Brassica rapa HOM05D006102 ORTHO05D007550 7.3e-60 234.6 208 56.7
SGA_v2.0_scaffold11G05526 Striga asiatica HOM05D006102 ORTHO05D007550 7.3e-60 234.6 209 56.0
BolC3t15598H Brassica oleracea HOM05D006102 ORTHO05D007550 1.2e-59 233.8 208 56.2
BcaB01g02181 Brassica carinata HOM05D006102 ORTHO05D007550 1.1e-58 230.7 208 56.7
DCAR_015878 Daucus carota HOM05D006102 ORTHO05D007550 1.4e-58 230.3 213 55.4
unitig_748.g7113 Utricularia gibba HOM05D006102 ORTHO05D007550 1.4e-58 230.3 206 55.3
AUR62004162 Chenopodium quinoa HOM05D006102 ORTHO05D007550 2.6e-57 226.1 210 57.1
AUR62013660 Chenopodium quinoa HOM05D006102 ORTHO05D007550 3.7e-56 222.2 201 57.7
arahy.Tifrunner.gnm1.ann1.1V3LDQ Arachis hypogaea HOM05D006102 ORTHO05D007550 6.4e-56 221.5 217 53.0
arahy.Tifrunner.gnm1.ann1.W52PF9 Arachis hypogaea HOM05D006102 ORTHO05D007550 8.3e-56 221.1 217 53.0
Cfa011153 Carpinus fangiana HOM05D006102 ORTHO05D007550 3.2e-55 219.2 183 59.6
Cfa011150 Carpinus fangiana HOM05D006102 ORTHO05D007550 2.1e-54 216.5 182 59.3
Medtr4g027425 Medicago truncatula HOM05D006102 ORTHO05D007550 6.0e-54 214.9 242 46.7
PSO170G5751 Papaver somniferum HOM05D006102 ORTHO05D007550 1.5e-52 210.3 216 51.4
Cfa011155 Carpinus fangiana HOM05D006102 ORTHO05D007550 1.6e-51 206.8 207 53.6
PSO017G2680 Papaver somniferum HOM05D006102 ORTHO05D007550 1.6e-51 206.8 216 50.9
Hund27378 Selenicereus undatus HOM05D006102 ORTHO05D007550 2.6e-49 199.5 207 51.7
EL10Ac1g00837 Beta vulgaris HOM05D006102 ORTHO05D007550 1.4e-47 193.7 211 50.7
Hma1.2p1_0072F.1_g038360 Hydrangea macrophylla HOM05D006102 ORTHO05D007550 3.2e-47 192.6 240 45.0
Sed0013724 Sechium edule HOM05D006102 ORTHO05D007550 7.1e-47 191.4 209 48.3
Ah.05g173810 Amaranthus hybridus HOM05D006102 ORTHO05D007550 1.1e-44 184.1 217 48.4
SEGI_10795 Sequoiadendron giganteum HOM05D006102 ORTHO05D007550 6.2e-43 178.3 213 45.1
ATR0317G095 Amborella trichopoda HOM05D006102 ORTHO05D007550 3.4e-41 172.6 229 44.5
GSVIVG01018154001 Vitis vinifera HOM05D006102 ORTHO05D007550 1.7e-40 170.2 112 74.1
Cc02_g24460 Coffea canephora HOM05D006102 ORTHO05D007550 6.6e-37 158.3 113 69.9
Haze_02708 Corylus avellana HOM05D006102 ORTHO05D007550 2.4e-31 139.8 91 70.3
Pp3c16_11310 Physcomitrium patens HOM05D006102 ORTHO05D007550 2.6e-25 119.8 227 31.7
HPP92_005330 Vanilla planifolia HOM05D006102 ORTHO05D007550 4.5e-25 119.0 115 53.0
Mapoly0072s0019 Marchantia polymorpha HOM05D006102 ORTHO05D007550 1.4e-23 114.0 204 30.9
Oeu005825.4 Olea europaea HOM05D006102 ORTHO05D007550 4.6e-22 109.0 167 41.9
AL3G41450 Arabidopsis lyrata HOM05D000059 ORTHO05D000128 2.7e-06 56.6 39 69.2


User provided reference genes

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