Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401025892 Solanum tuberosum HOM05D007022 ORTHO05D008868 4.0e-78 295.0 192 100.0
Solyc01g108200.3 Solanum lycopersicum HOM05D007022 ORTHO05D008868 1.3e-68 263.5 185 94.1
Sopen01g050430 Solanum pennellii HOM05D007022 ORTHO05D008868 1.9e-67 259.6 185 95.1
Nitab4.5_0005758g0030 Nicotiana tabacum HOM05D007022 ORTHO05D008868 1.1e-48 197.2 165 63.0
Nitab4.5_0012979g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 5.7e-48 194.9 165 62.4
Rhsim11G0166300 Rhododendron simsii HOM05D007022 ORTHO05D008868 7.4e-48 194.5 127 70.1
Dinv42154 Davidia involucrata HOM05D007022 ORTHO05D008868 2.2e-47 193.0 125 72.0
Hma1.2p1_0370F.1_g137830 Hydrangea macrophylla HOM05D007022 ORTHO05D008868 3.7e-47 192.2 124 72.6
Dinv23619 Davidia involucrata HOM05D007022 ORTHO05D008868 4.8e-47 191.8 125 71.2
vmacro02203 Vaccinium macrocarpon HOM05D007022 ORTHO05D008868 4.8e-47 191.8 128 70.3
Lj9A358T46 Lonicera japonica HOM05D007022 ORTHO05D008868 6.3e-47 191.4 125 72.8
Nitab4.5_0002543g0040 Nicotiana tabacum HOM05D007022 ORTHO05D008868 6.3e-47 191.4 124 73.4
Actinidia12953 Actinidia chinensis HOM05D007022 ORTHO05D008868 1.1e-46 190.7 118 72.0
GSVIVG01031751001 Vitis vinifera HOM05D007022 ORTHO05D008868 1.8e-46 189.9 120 72.5
Actinidia00443 Actinidia chinensis HOM05D007022 ORTHO05D008868 2.4e-46 189.5 111 75.7
Cc02_g18740 Coffea canephora HOM05D007022 ORTHO05D008868 2.4e-46 189.5 131 67.9
Peaxi162Scf00016g01823 Petunia axillaris HOM05D007022 ORTHO05D008868 3.1e-46 189.1 113 81.4
Oeu007283.1 Olea europaea HOM05D007022 ORTHO05D008868 5.3e-46 188.3 126 69.8
TAR381G0954 Trochodendron aralioides HOM05D007022 ORTHO05D008868 1.5e-45 186.8 127 67.7
Nitab4.5_0007480g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 1.7e-44 183.3 122 72.1
CDE04G2473 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 2.2e-44 183.0 103 78.6
MBI06_g36648_MAGBIO Magnolia biondii HOM05D007022 ORTHO05D008868 2.2e-44 183.0 130 66.2
Migut.B00344 Erythranthe guttata HOM05D007022 ORTHO05D008868 2.9e-44 182.6 124 64.5
Nn1g04883 Nelumbo nucifera HOM05D007022 ORTHO05D008868 5.0e-44 181.8 103 76.7
Sc08g0000700 Simmondsia chinensis HOM05D005091 ORTHO05D006047 1.9e-43 179.9 100 77.0
Nn5g30258 Nelumbo nucifera HOM05D007022 ORTHO05D008868 3.2e-43 179.1 96 81.2
QL11p035981 Quercus lobata HOM05D007022 ORTHO05D008868 4.2e-43 178.7 106 72.6
SalBow6G3975 Salvia bowleyana HOM05D007022 ORTHO05D008868 5.5e-43 178.3 110 72.7
Manes.07G082700 Manihot esculenta HOM05D007022 ORTHO05D008868 7.2e-43 177.9 110 70.0
Oeu013707.1 Olea europaea HOM05D007022 ORTHO05D008868 1.2e-42 177.2 119 71.4
Cpa.g.sc62.15 Carica papaya HOM05D007022 ORTHO05D008868 2.1e-42 176.4 110 71.8
Haze_10076 Corylus avellana HOM05D007022 ORTHO05D008868 2.7e-42 176.0 94 80.9
unitig_26.g10239 Utricularia gibba HOM05D007022 ORTHO05D008868 2.7e-42 176.0 118 69.5
Potri.009G102400 Populus trichocarpa HOM05D007022 ORTHO05D008868 3.6e-42 175.6 110 68.2
FAN15G0654 Fragaria x ananassa HOM05D007022 ORTHO05D008868 4.7e-42 175.3 98 74.5
FAN24G2553 Fragaria x ananassa HOM05D007022 ORTHO05D008868 4.7e-42 175.3 96 76.0
Thecc.02G100400 Theobroma cacao HOM05D007022 ORTHO05D008868 6.1e-42 174.9 113 69.9
Ciclev10029362m.g Citrus clementina HOM05D007022 ORTHO05D008868 1.0e-41 174.1 102 73.5
PGR042G2146 Punica granatum HOM05D007022 ORTHO05D008868 1.0e-41 174.1 102 72.5
FAN20G2768 Fragaria x ananassa HOM05D007022 ORTHO05D008868 1.4e-41 173.7 98 73.5
arahy.Tifrunner.gnm1.ann1.WB2CJ6 Arachis hypogaea HOM05D007022 ORTHO05D008868 2.3e-41 172.9 97 76.3
CSS0015269 Camellia sinensis var. sinensis HOM05D007022 ORTHO05D008868 6.7e-41 171.4 109 73.4
Sp3g17290 Schrenkiella parvula HOM05D007022 ORTHO05D008868 1.5e-40 170.2 87 81.6
SGA_v2.0_scaffold13G06591 Striga asiatica HOM05D007022 ORTHO05D008868 2.6e-40 169.5 129 63.6
Thhalv10021599m.g Eutrema salsugineum HOM05D007022 ORTHO05D008868 3.3e-40 169.1 124 62.9
MSTRG.27723 Avicennia marina HOM05D007022 ORTHO05D008868 4.4e-40 168.7 127 65.4
Gohir.A13G040100 Gossypium hirsutum HOM05D007022 ORTHO05D008868 4.4e-40 168.7 130 61.5
Gohir.D13G038800 Gossypium hirsutum HOM05D007022 ORTHO05D008868 5.7e-40 168.3 130 61.5
Gorai.013G043500 Gossypium raimondii HOM05D007022 ORTHO05D008868 5.7e-40 168.3 130 61.5
AL3G32600 Arabidopsis lyrata HOM05D007022 ORTHO05D008868 7.4e-40 167.9 87 80.5
AT3G19220 Arabidopsis thaliana HOM05D007022 ORTHO05D008868 7.4e-40 167.9 87 80.5
COL.COLO4_32660 Corchorus olitorius HOM05D007022 ORTHO05D003154 9.7e-40 167.5 129 60.5
Aqoxy6G01341 Aquilegia oxysepala HOM05D007022 ORTHO05D008868 2.2e-39 166.4 127 62.2
BcaB06g25978 Brassica carinata HOM05D007022 ORTHO05D008868 2.8e-39 166.0 87 80.5
EL10Ac9g21683 Beta vulgaris HOM05D007022 ORTHO05D008868 8.2e-39 164.5 107 69.2
CiPaw.06G172800 Carya illinoinensis HOM05D007022 ORTHO05D008868 8.2e-39 164.5 111 68.5
Prupe.8G124000 Prunus persica HOM05D007022 ORTHO05D008868 1.1e-38 164.1 87 81.6
Aa31LG8G6010 Aethionema arabicum HOM05D007022 ORTHO05D008868 2.4e-38 162.9 95 73.7
ATR0100G054 Amborella trichopoda HOM05D007022 ORTHO05D008868 3.1e-38 162.5 118 63.6
CANSAT25G3754 Cannabis sativa HOM05D007022 ORTHO05D008868 3.1e-38 162.5 89 78.7
MD10G1094200 Malus domestica HOM05D007022 ORTHO05D008868 4.1e-38 162.2 95 73.7
BcaC05g28522 Brassica carinata HOM05D007022 ORTHO05D008868 7.0e-38 161.4 87 78.2
A05p30420 Brassica napus HOM05D007022 ORTHO05D008868 7.0e-38 161.4 87 78.2
BraA05t21880Z Brassica rapa HOM05D007022 ORTHO05D008868 7.0e-38 161.4 87 78.2
Sed0002892 Sechium edule HOM05D007022 ORTHO05D008868 7.0e-38 161.4 86 80.2
BolC5t33329H Brassica oleracea HOM05D007022 ORTHO05D008868 2.0e-37 159.8 103 68.9
PSO675G2542 Papaver somniferum HOM05D007022 ORTHO05D008868 2.6e-37 159.5 98 74.5
Hund00236 Selenicereus undatus HOM05D007022 ORTHO05D008868 3.5e-37 159.1 110 66.4
Lj4g0019449 Lotus japonicus HOM05D007022 ORTHO05D008868 4.5e-37 158.7 102 67.6
FvH4_2g06130 Fragaria vesca HOM05D007022 ORTHO05D008868 5.9e-37 158.3 88 75.0
Carub.0003s1905 Capsella rubella HOM05D007022 ORTHO05D008868 7.7e-37 157.9 124 59.7
TWI75G1380 Tripterygium wilfordii HOM05D007022 ORTHO05D008868 7.7e-37 157.9 109 65.1
PSO541G2619 Papaver somniferum HOM05D007022 ORTHO05D008868 1.3e-36 157.1 88 80.7
Lsat_1_v5_gn_9_110080 Lactuca sativa HOM05D007022 ORTHO05D008868 1.7e-36 156.8 94 74.5
RcHm_v2.0_Chr6g0257061 Rosa chinensis HOM05D007022 ORTHO05D008868 2.2e-36 156.4 87 75.9
ECA240G1411 Erigeron canadensis HOM05D007022 ORTHO05D008868 2.9e-36 156.0 104 69.2
HPP92_016383 Vanilla planifolia HOM05D002198 ORTHO05D008868 2.9e-36 156.0 87 71.3
CsaV3_3G018570 Cucumis sativus L. HOM05D007022 ORTHO05D008868 3.8e-36 155.6 86 76.7
arahy.Tifrunner.gnm1.ann1.059Z6S Arachis hypogaea HOM05D007022 ORTHO05D008868 5.0e-36 155.2 88 76.1
MELO3C019509.2 Cucumis melo HOM05D007022 ORTHO05D008868 5.0e-36 155.2 86 76.7
Sopen10g021420 Solanum pennellii HOM05D007022 ORTHO05D008868 5.0e-36 155.2 90 74.4
Atru.chr5.2709 Acer truncatum HOM05D007022 ORTHO05D008868 1.1e-35 154.1 86 75.6
HanXRQChr09g0251721 Helianthus annuus HOM05D007022 ORTHO05D008868 1.1e-35 154.1 91 73.6
VMungo0251G0366 Vigna mungo HOM05D007022 ORTHO05D008868 1.1e-35 154.1 105 65.7
Os09g0458400 Oryza sativa ssp. japonica HOM05D007022 ORTHO05D008868 5.5e-35 151.8 87 75.9
ClCG05G010000 Citrullus lanatus HOM05D007022 ORTHO05D008868 1.2e-34 150.6 109 64.2
TPR.G28492 Trifolium pratense HOM05D007022 ORTHO05D008868 2.7e-34 149.4 86 73.3
Zm00001eb100830 Zea mays HOM05D007022 ORTHO05D008868 2.7e-34 149.4 98 67.3
THA.LOC104798819 Tarenaya hassleriana HOM05D007022 ORTHO05D008868 4.7e-34 148.7 79 79.7
Medtr4g086255 Medicago truncatula HOM05D007022 ORTHO05D008868 6.1e-34 148.3 96 70.8
Ca_18680_v3 Cicer arietinum L. HOM05D007022 ORTHO05D008868 1.8e-33 146.7 99 66.7
Lalb_Chr16g0384701 Lupinus albus HOM05D007022 ORTHO05D008868 3.0e-33 146.0 86 73.3
Psat7g125000 Pisum sativum HOM05D007022 ORTHO05D008868 2.0e-32 143.3 99 65.7
Ah.01g019040 Amaranthus hybridus HOM05D007022 ORTHO05D008868 7.5e-32 141.4 106 61.3
Phvul.003G292600 Phaseolus vulgaris HOM05D007022 ORTHO05D008868 9.7e-32 141.0 81 72.8
Glyma.02G132900 Glycine max HOM05D007022 ORTHO05D008868 1.4e-30 137.1 81 71.6
Glyma.07G212100 Glycine max HOM05D007022 ORTHO05D008868 2.4e-30 136.3 81 71.6
AUR62016784 Chenopodium quinoa HOM05D007022 ORTHO05D008868 2.2e-28 129.8 83 68.7
SMO232G0067 Selaginella moellendorffii HOM05D007022 ORTHO05D008868 1.0e-25 120.9 92 58.7
CBR_g29933 Chara braunii HOM05D007022 ORTHO05D008868 3.4e-24 115.9 102 52.0
Sopen10g021450 Solanum pennellii HOM05D007022 ORTHO05D008868 5.7e-24 115.2 97 58.8
Pp3c1_42880 Physcomitrium patens HOM05D007022 ORTHO05D008868 9.8e-24 114.4 100 55.0
CDE03G0325 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 3.7e-23 112.5 63 74.6
AagrBONN_evm.TU.Sc2ySwM_368.1030 Anthoceros agrestis HOM05D007022 ORTHO05D008868 5.4e-22 108.6 87 50.6
Pp3c2_400 Physcomitrium patens HOM05D007022 ORTHO05D008868 5.4e-22 108.6 99 49.5
Mapoly0186s0009 Marchantia polymorpha HOM05D007022 ORTHO05D008868 8.6e-20 101.3 108 47.2
Cfa004517 Carpinus fangiana HOM05D007022 ORTHO05D008868 2.3e-17 93.2 53 77.4
Sabra09G0078400 Salix brachista HOM05D007022 ORTHO05D008868 3.0e-17 92.8 60 68.3
DCAR_022028 Daucus carota HOM05D007022 ORTHO05D008868 2.0e-16 90.1 76 60.5
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 3.4e-16 89.4 81 59.3
CARHR094630 Cardamine hirsuta HOM05D007022 ORTHO05D008868 9.2e-14 81.3 60 63.3
ECA240G0576 Erigeron canadensis HOM05D007022 ORTHO05D008868 3.5e-13 79.3 47 72.3
SEGI_10031 Sequoiadendron giganteum HOM05D007022 ORTHO05D008868 1.4e-09 67.4 38 65.8
Rhsim11G0166200 Rhododendron simsii HOM05D007022 ORTHO05D008868 5.8e-08 62.0 34 76.5
SEGI_30369 Sequoiadendron giganteum HOM05D007022 ORTHO05D014789 9.2e-06 54.7 72 43.1


User provided reference genes

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