Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401025831 Solanum tuberosum HOM05D008110 ORTHO05D000088 3.9e-194 681.4 376 100.0
Solyc01g109030.4 Solanum lycopersicum HOM05D008110 ORTHO05D000088 7.4e-84 315.1 215 82.8
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 4.6e-70 269.2 126 100.0
CAN.G322.83 Capsicum annuum HOM05D008110 ORTHO05D000088 1.2e-62 244.6 146 77.4
Sopen01g051160 Solanum pennellii HOM05D008110 ORTHO05D000088 8.5e-56 221.9 142 72.5
Sopen02g009350 Solanum pennellii HOM05D008110 ORTHO05D000088 1.5e-55 221.1 148 68.9
PGSC0003DMG400025830 Solanum tuberosum HOM05D008110 ORTHO05D000088 3.2e-55 219.9 147 70.7
Solyc01g108950.3 Solanum lycopersicum HOM05D008110 ORTHO05D000088 4.2e-55 219.5 142 71.1
PGSC0003DMG400010668 Solanum tuberosum HOM05D008110 ORTHO05D000088 5.5e-55 219.2 128 78.1
Sopen01g048640 Solanum pennellii HOM05D008110 ORTHO05D000088 2.7e-54 216.9 128 77.3
Solyc02g026080.2 Solanum lycopersicum HOM05D008110 ORTHO05D000088 3.6e-54 216.5 148 67.6
Solyc01g106250.4 Solanum lycopersicum HOM05D008110 ORTHO05D000088 1.0e-53 214.9 147 70.1
Nitab4.5_0001401g0140 Nicotiana tabacum HOM05D008110 ORTHO05D000088 3.0e-53 213.4 143 69.9
Nitab4.5_0008194g0010 Nicotiana tabacum HOM05D008110 ORTHO05D000088 4.0e-53 213.0 132 73.5
CAN.G241.1 Capsicum annuum HOM05D008110 ORTHO05D000088 5.2e-53 212.6 148 66.9
Peaxi162Scf00016g01351 Petunia axillaris HOM05D008110 ORTHO05D000088 3.3e-52 209.9 133 73.7
CAN.G192.15 Capsicum annuum HOM05D008110 ORTHO05D000088 3.5e-49 199.9 148 64.2
CAN.G322.59 Capsicum annuum HOM05D008110 ORTHO05D000088 6.8e-45 185.7 146 63.0
Solyc01g108940.2 Solanum lycopersicum HOM05D008110 ORTHO05D000088 2.6e-44 183.7 119 72.3
Sopen02g006830 Solanum pennellii HOM05D008110 ORTHO05D000088 3.7e-43 179.9 121 68.6
CAN.G555.3 Capsicum annuum HOM05D008110 ORTHO05D000088 5.9e-41 172.6 127 63.0
Actinidia12967 Actinidia chinensis HOM05D008110 ORTHO05D000088 3.4e-36 156.8 114 57.0
Sopen01g051220 Solanum pennellii HOM05D008110 ORTHO05D000088 4.9e-35 152.9 76 89.5
PGSC0003DMG400036386 Solanum tuberosum HOM05D008110 ORTHO05D000088 2.0e-33 147.5 146 52.7
CSS0024769 Camellia sinensis var. sinensis HOM05D008110 ORTHO05D000088 1.0e-32 145.2 144 44.4
RhsimUnG0089900 Rhododendron simsii HOM05D008110 ORTHO05D000088 2.9e-32 143.7 132 47.0
Rhsim11G0170700 Rhododendron simsii HOM05D008110 ORTHO05D000088 8.6e-32 142.1 132 48.5
Sopen01g051140 Solanum pennellii HOM05D008110 ORTHO05D000088 1.1e-31 141.7 102 68.6
Cc00_g00220 Coffea canephora HOM05D008110 ORTHO05D000088 1.5e-31 141.4 128 47.7
Dinv42109 Davidia involucrata HOM05D008110 ORTHO05D000088 1.9e-31 141.0 115 47.8
Hma1.2p1_1527F.1_g289060 Hydrangea macrophylla HOM05D008110 ORTHO05D000088 4.7e-30 136.3 113 46.9
Cc00_g00230 Coffea canephora HOM05D008110 ORTHO05D000088 6.1e-30 136.0 116 52.6
DCAR_022075 Daucus carota HOM05D008110 ORTHO05D000088 1.0e-29 135.2 128 47.7
PGSC0003DMG400037529 Solanum tuberosum HOM05D008110 ORTHO05D000088 5.2e-29 132.9 80 71.2
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 5.2e-29 132.9 364 26.6
Migut.N02603 Erythranthe guttata HOM05D008110 ORTHO05D000088 7.5e-28 129.0 124 48.4
MSTRG.17812 Avicennia marina HOM05D008110 ORTHO05D000088 4.1e-26 123.2 123 44.7
PGSC0003DMG400035405 Solanum tuberosum HOM05D008110 ORTHO05D000088 7.0e-26 122.5 138 50.0
PGSC0003DMG400044725 Solanum tuberosum HOM05D008110 ORTHO05D000088 2.7e-25 120.6 99 57.6
PGSC0003DMG400044605 Solanum tuberosum HOM05D008110 ORTHO05D000088 1.0e-24 118.6 101 60.4
CAN.G504.44 Capsicum annuum HOM05D000185 ORTHO05D000105 3.0e-24 117.1 119 53.8
Sopen06g015150 Solanum pennellii HOM05D008110 ORTHO05D000088 8.6e-24 115.5 151 43.7
Migut.J01193 Erythranthe guttata HOM05D008110 ORTHO05D000088 3.3e-23 113.6 112 48.2
SGA_v2.0_scaffold54G19507 Striga asiatica HOM05D008110 ORTHO05D000088 5.6e-23 112.8 111 49.5
SalBow7G1050 Salvia bowleyana HOM05D008110 ORTHO05D000088 7.3e-23 112.5 114 41.2
CAN.G192.14 Capsicum annuum HOM05D008110 ORTHO05D000088 9.5e-23 112.1 83 59.0
Rhsim02G0167400 Rhododendron simsii HOM05D008110 ORTHO05D000088 2.8e-22 110.5 85 47.1
Oeu003285.1 Olea europaea HOM05D008110 ORTHO05D000088 5.2e-21 106.3 102 47.1
PGSC0003DMG400045703 Solanum tuberosum HOM05D008110 ORTHO05D000088 1.2e-20 105.1 60 76.7
Sopen01g051230 Solanum pennellii HOM05D008110 ORTHO05D000088 2.2e-19 100.9 53 90.6
SGA_v2.0_scaffold223G42874 Striga asiatica HOM05D008110 ORTHO05D000088 2.4e-18 97.4 106 42.5
SGA_v2.0_scaffold54G19506 Striga asiatica HOM05D008110 ORTHO05D000088 9.2e-18 95.5 134 33.6
Duzib248G0315 Durio zibethinus HOM05D008110 ORTHO05D000088 4.6e-17 93.2 104 46.2
Atru.chr9.727 Acer truncatum HOM05D008110 ORTHO05D000088 1.3e-16 91.7 105 37.1
Eucgr.A01956 Eucalyptus grandis HOM05D008110 ORTHO05D000088 1.9e-15 87.8 98 38.8
Eucgr.I01213 Eucalyptus grandis HOM05D008110 ORTHO05D000088 5.6e-15 86.3 98 38.8
TWI31G0648 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 1.6e-14 84.7 288 23.6
Ciclev10026137m.g Citrus clementina HOM05D000823 ORTHO05D000088 2.8e-14 84.0 294 24.1
EL10Ac9g21796 Beta vulgaris HOM05D000823 ORTHO05D000088 3.6e-14 83.6 100 35.0
SalBow3G0306 Salvia bowleyana HOM05D008110 ORTHO05D000088 1.8e-13 81.3 73 43.8
Actinidia36524 Actinidia chinensis HOM05D001349 ORTHO05D001980 4.0e-13 80.1 297 23.6
Sopen01g051190 Solanum pennellii HOM05D008110 ORTHO05D000088 4.0e-13 80.1 98 44.9
Sopen05g025010 Solanum pennellii HOM05D008110 ORTHO05D000088 3.4e-12 77.0 50 74.0
PGR102G2553 Punica granatum HOM05D000823 ORTHO05D000088 5.8e-12 76.3 273 19.4
Oeu003288.1 Olea europaea HOM05D008110 ORTHO05D000088 6.4e-11 72.8 52 51.9
COL.COLO4_32520 Corchorus olitorius HOM05D008110 ORTHO05D000088 8.3e-11 72.4 89 47.2
Thecc.02G027900 Theobroma cacao HOM05D008110 ORTHO05D000088 1.9e-10 71.2 108 38.0
Phvul.008G220000 Phaseolus vulgaris HOM05D010195 ORTHO05D000088 3.2e-10 70.5 124 31.5
Glyma.11G124000 Glycine max HOM05D010195 ORTHO05D000088 4.1e-10 70.1 136 31.6
Nn5g29404 Nelumbo nucifera HOM05D000823 ORTHO05D000088 1.2e-09 68.6 111 25.2
Glyma.14G055700 Glycine max HOM05D010195 ORTHO05D000088 4.6e-09 66.6 123 30.9
Glyma.12G048500 Glycine max HOM05D010195 ORTHO05D000088 1.0e-08 65.5 158 27.2
Atru.chr2.2906 Acer truncatum HOM05D000823 ORTHO05D000088 1.3e-08 65.1 100 31.0
CiPaw.02G012800 Carya illinoinensis HOM05D000823 ORTHO05D000088 2.3e-08 64.3 101 30.7
TAR381G0348 Trochodendron aralioides HOM05D000823 ORTHO05D000088 2.3e-08 64.3 107 30.8
AT4G31640 Arabidopsis thaliana HOM05D000888 ORTHO05D000740 3.0e-08 63.9 106 31.1
Glyma.12G049900 Glycine max HOM05D010195 ORTHO05D000088 3.9e-08 63.5 158 27.2
Dinv26765 Davidia involucrata HOM05D008110 ORTHO05D024989 5.1e-08 63.2 120 28.3
Hund06201 Selenicereus undatus HOM05D000823 ORTHO05D000088 5.1e-08 63.2 70 41.4
Lalb_Chr01g0003021 Lupinus albus HOM05D010195 ORTHO05D000088 6.6e-08 62.8 118 33.1
AL8G36740 Arabidopsis lyrata HOM05D009243 ORTHO05D011355 1.1e-07 62.0 97 35.1
AUR62016657 Chenopodium quinoa HOM05D000823 ORTHO05D000088 1.1e-07 62.0 83 32.5
HPP92_014045 Vanilla planifolia HOM05D000823 ORTHO05D000088 1.1e-07 62.0 91 31.9
Medtr1g046200 Medicago truncatula HOM05D010195 ORTHO05D000088 1.9e-07 61.2 154 22.7
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 3.3e-07 60.5 127 29.1
TWI38G2045 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 3.3e-07 60.5 131 29.0
Carub.0008s2085 Capsella rubella HOM05D009243 ORTHO05D011355 7.3e-07 59.3 107 32.7
AT5G60140 Arabidopsis thaliana HOM05D009243 ORTHO05D011355 9.5e-07 58.9 98 33.7
Cpa.g.sc15.87 Carica papaya HOM05D000823 ORTHO05D000088 9.5e-07 58.9 97 30.9
Sp6g21790 Schrenkiella parvula HOM05D009243 ORTHO05D011355 9.5e-07 58.9 119 33.6
Medtr1g046320 Medicago truncatula HOM05D010195 ORTHO05D000088 1.2e-06 58.5 165 24.8
Haze_08007 Corylus avellana HOM05D000823 ORTHO05D000088 1.6e-06 58.2 92 33.7
Haze_08013 Corylus avellana HOM05D000823 ORTHO05D000088 1.6e-06 58.2 92 33.7
Ah.01g019890 Amaranthus hybridus HOM05D001349 ORTHO05D001980 2.1e-06 57.8 83 36.1
Psat6g109080 Pisum sativum HOM05D010195 ORTHO05D000088 2.8e-06 57.4 124 28.2
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 3.6e-06 57.0 127 28.3
Lj3g0014714 Lotus japonicus HOM05D010195 ORTHO05D000088 3.6e-06 57.0 158 26.6
AL8G36730 Arabidopsis lyrata HOM05D009243 ORTHO05D011355 4.7e-06 56.6 101 33.7
Oeu025427.1 Olea europaea HOM05D044301 ORTHO05D000088 6.2e-06 56.2 119 31.9
Phvul.011G050500 Phaseolus vulgaris HOM05D010195 ORTHO05D000088 8.1e-06 55.8 162 25.9
Potri.007G035500 Populus trichocarpa HOM05D000823 ORTHO05D000088 8.1e-06 55.8 130 26.2


User provided reference genes

Program Settings