Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 5.3e-93 344.4 175 100.0
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 4.5e-92 341.3 175 98.9
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 1.7e-91 339.3 175 98.3
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 1.4e-77 293.1 163 92.0
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 4.2e-74 281.6 161 90.1
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 2.9e-67 258.8 155 85.8
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 4.2e-58 228.4 174 67.2
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 1.4e-56 223.4 177 66.1
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 2.3e-56 222.6 163 67.5
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 6.8e-56 221.1 177 65.0
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 6.8e-56 221.1 174 63.8
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 1.2e-55 220.3 177 66.7
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 1.2e-55 220.3 177 62.7
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 3.4e-55 218.8 176 63.1
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 2.8e-54 215.7 177 62.1
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 1.1e-53 213.8 177 61.6
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 1.4e-53 213.4 175 61.1
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 1.8e-53 213.0 177 64.4
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 2.4e-53 212.6 177 63.8
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 3.1e-53 212.2 178 61.8
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 4.1e-53 211.8 177 62.7
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 1.6e-52 209.9 177 62.7
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 1.6e-52 209.9 168 62.5
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 3.5e-52 208.8 176 60.8
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 3.5e-52 208.8 173 64.2
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 4.5e-52 208.4 174 62.6
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 5.9e-52 208.0 177 61.6
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 7.7e-52 207.6 176 61.9
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 1.0e-51 207.2 155 68.4
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 1.7e-51 206.5 165 66.7
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 1.7e-51 206.5 159 67.3
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 2.2e-51 206.1 162 66.7
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 2.2e-51 206.1 177 61.6
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 2.9e-51 205.7 167 62.3
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 3.8e-51 205.3 159 67.9
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 1.1e-50 203.8 159 65.4
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 1.5e-50 203.4 177 58.2
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 1.9e-50 203.0 178 63.5
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 2.5e-50 202.6 159 64.2
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 5.5e-50 201.4 159 64.2
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 9.4e-50 200.7 168 61.9
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 1.6e-49 199.9 164 65.2
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 1.6e-49 199.9 178 59.6
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 2.1e-49 199.5 177 61.0
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 3.6e-49 198.7 165 62.4
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 4.7e-49 198.4 152 65.1
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 6.1e-49 198.0 160 64.4
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 1.0e-48 197.2 163 62.0
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 1.4e-48 196.8 174 57.5
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 1.8e-48 196.4 210 53.3
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 2.3e-48 196.1 176 56.8
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 2.3e-48 196.1 174 58.0
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 2.3e-48 196.1 163 61.3
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 3.0e-48 195.7 166 62.7
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 4.0e-48 195.3 177 58.8
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 8.8e-48 194.1 166 63.3
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 8.8e-48 194.1 178 57.3
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 1.2e-47 193.7 158 62.0
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 1.5e-47 193.4 170 58.8
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 1.5e-47 193.4 174 58.6
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 2.0e-47 193.0 162 58.6
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 2.0e-47 193.0 167 62.9
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 3.4e-47 192.2 164 62.2
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 3.4e-47 192.2 164 62.2
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 3.4e-47 192.2 164 62.2
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 3.4e-47 192.2 163 60.7
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 4.4e-47 191.8 177 57.1
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 7.5e-47 191.0 167 62.3
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 2.8e-46 189.1 165 57.6
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 4.9e-46 188.3 163 62.0
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 6.3e-46 188.0 177 56.5
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 6.3e-46 188.0 177 58.8
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 1.1e-45 187.2 166 57.8
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 1.1e-45 187.2 177 56.5
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 1.8e-45 186.4 162 63.6
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 1.8e-45 186.4 174 56.9
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 2.4e-45 186.0 163 59.5
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 4.1e-45 185.3 166 60.2
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 4.1e-45 185.3 256 44.5
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 5.4e-45 184.9 166 60.8
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 5.4e-45 184.9 156 61.5
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 5.4e-45 184.9 160 60.0
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 7.0e-45 184.5 166 60.2
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 9.1e-45 184.1 174 56.3
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 9.1e-45 184.1 162 59.3
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 1.6e-44 183.3 159 62.9
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 2.0e-44 183.0 175 57.1
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 4.5e-44 181.8 178 56.7
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 5.9e-44 181.4 138 67.4
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 1.3e-43 180.3 163 58.9
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 8.6e-43 177.6 175 56.6
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 1.9e-42 176.4 160 54.4
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 1.2e-41 173.7 144 62.5
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 1.4e-40 170.2 158 54.4
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 1.8e-40 169.9 133 63.9
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 3.0e-40 169.1 134 62.7
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 1.7e-38 163.3 175 50.9
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 8.3e-38 161.0 176 50.6
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 2.4e-37 159.5 174 52.3
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 4.1e-37 158.7 176 49.4
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 2.0e-36 156.4 146 57.5
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 2.7e-36 156.0 172 47.7
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 7.8e-36 154.5 175 53.1
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 2.3e-35 152.9 162 50.6
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 1.9e-34 149.8 120 63.3
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 2.8e-33 146.0 165 55.2
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 6.8e-32 141.4 120 62.5
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 4.4e-31 138.7 162 51.2
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 4.4e-31 138.7 123 60.2
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 5.8e-31 138.3 120 63.3
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 2.9e-30 136.0 120 62.5
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 3.2e-29 132.5 157 51.6
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 3.2e-29 132.5 157 51.6
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 1.6e-25 120.2 118 56.8
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 3.6e-25 119.0 162 42.0
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 4.7e-25 118.6 98 60.2
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 6.2e-25 118.2 91 61.5
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 2.3e-24 116.3 108 56.5
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 2.3e-24 116.3 163 45.4
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 3.1e-24 115.9 154 45.5
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 2.0e-23 113.2 134 49.3
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 5.8e-23 111.7 111 55.9
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 1.1e-21 107.5 95 58.9
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 1.4e-21 107.1 119 48.7
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 7.8e-20 101.3 85 58.8
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 1.9e-13 80.1 79 54.4
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 6.0e-12 75.1 74 52.7
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 1.7e-11 73.6 44 77.3
CBR_g130 Chara braunii HOM05D000019 ORTHO05D000002 9.6e-10 67.8 95 36.8
SEGI_03586 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 3.1e-08 62.8 44 61.4
BcaC05g25998 Brassica carinata HOM05D005768 ORTHO05D007100 8.9e-08 61.2 40 67.5
Cre12.g547734 Chlamydomonas reinhardtii HOM05D005768 ORTHO05D007100 2.0e-07 60.1 160 30.0
C02p33000 Brassica napus HOM05D005768 ORTHO05D041760 6.4e-06 55.1 42 61.9
BolC2t09396H Brassica oleracea HOM05D005768 ORTHO05D041760 6.4e-06 55.1 42 61.9


User provided reference genes

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