Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401024517 Solanum tuberosum HOM05D003462 ORTHO05D003946 9.2e-60 233.4 122 100.0
Sopen03g033710 Solanum pennellii HOM05D003462 ORTHO05D003946 7.8e-59 230.3 122 97.5
CAN.G982.30 Capsicum annuum HOM05D003462 ORTHO05D003946 2.9e-58 228.4 122 97.5
Solyc03g114640.4 Solanum lycopersicum HOM05D003462 ORTHO05D003946 2.9e-58 228.4 122 97.5
Nitab4.5_0000646g0270 Nicotiana tabacum HOM05D003462 ORTHO05D003946 8.6e-58 226.9 122 95.9
Peaxi162Scf00017g03131 Petunia axillaris HOM05D003462 ORTHO05D003946 9.8e-54 213.4 122 89.3
Actinidia35059 Actinidia chinensis HOM05D003462 ORTHO05D003946 1.5e-46 189.5 122 79.5
Manes.01G024300 Manihot esculenta HOM05D003462 ORTHO05D003946 1.5e-46 189.5 122 76.2
Nn4g23600 Nelumbo nucifera HOM05D003462 ORTHO05D003946 9.8e-46 186.8 122 76.2
Cpa.g.sc3.203 Carica papaya HOM05D003462 ORTHO05D003946 1.7e-45 186.0 122 74.6
Lj5A138T59 Lonicera japonica HOM05D003462 ORTHO05D003946 2.2e-45 185.7 122 77.0
Rhsim12G0146800 Rhododendron simsii HOM05D003462 ORTHO05D003946 8.3e-45 183.7 122 76.2
QL10p021514 Quercus lobata HOM05D003462 ORTHO05D003946 3.2e-44 181.8 120 74.2
CiPaw.15G117200 Carya illinoinensis HOM05D003462 ORTHO05D003946 4.1e-44 181.4 122 73.0
Phvul.003G181400 Phaseolus vulgaris HOM05D003462 ORTHO05D003946 4.1e-44 181.4 122 75.4
Haze_18545 Corylus avellana HOM05D003462 ORTHO05D003946 5.4e-44 181.0 122 73.0
Cc04_g07970 Coffea canephora HOM05D003462 ORTHO05D003946 7.1e-44 180.6 122 72.1
Potri.015G047500 Populus trichocarpa HOM05D003462 ORTHO05D003946 7.1e-44 180.6 122 74.6
Medtr4g112860 Medicago truncatula HOM05D003462 ORTHO05D003946 1.6e-43 179.5 120 75.0
Ciclev10019214m.g Citrus clementina HOM05D003462 ORTHO05D003946 2.1e-43 179.1 122 71.3
Duzib205G0774 Durio zibethinus HOM05D003462 ORTHO05D003946 2.1e-43 179.1 122 72.1
PGR083G2784 Punica granatum HOM05D003462 ORTHO05D003946 2.1e-43 179.1 122 71.3
TPR.G2020 Trifolium pratense HOM05D003462 ORTHO05D003946 2.1e-43 179.1 122 73.8
Hma1.2p1_0744F.1_g211701 Hydrangea macrophylla HOM05D003462 ORTHO05D003946 2.7e-43 178.7 122 73.8
TAR371G0026 Trochodendron aralioides HOM05D003462 ORTHO05D003946 6.0e-43 177.6 122 73.0
CANSAT80G0024 Cannabis sativa HOM05D003462 ORTHO05D003946 7.8e-43 177.2 122 72.1
Lj4g0004217 Lotus japonicus HOM05D003462 ORTHO05D003946 7.8e-43 177.2 119 72.3
arahy.Tifrunner.gnm1.ann1.8883SE Arachis hypogaea HOM05D003462 ORTHO05D003946 1.0e-42 176.8 122 70.5
arahy.Tifrunner.gnm1.ann1.HJ4MYC Arachis hypogaea HOM05D003462 ORTHO05D003946 1.0e-42 176.8 122 70.5
Sed0016449 Sechium edule HOM05D003462 ORTHO05D003946 1.0e-42 176.8 122 69.7
COL.COLO4_28809 Corchorus olitorius HOM05D003462 ORTHO05D003946 1.3e-42 176.4 122 71.3
FvH4_5g13110 Fragaria vesca HOM05D003462 ORTHO05D003946 1.3e-42 176.4 122 72.1
FAN18G1062 Fragaria x ananassa HOM05D003462 ORTHO05D003946 1.3e-42 176.4 122 72.1
MD14G1217600 Malus domestica HOM05D003462 ORTHO05D003946 1.3e-42 176.4 122 70.5
VMungo1215G0716 Vigna mungo HOM05D003462 ORTHO05D003946 1.7e-42 176.0 122 72.1
Oeu031926.1 Olea europaea HOM05D003462 ORTHO05D003946 2.3e-42 175.6 122 74.6
vmacro16468 Vaccinium macrocarpon HOM05D003462 ORTHO05D003946 3.0e-42 175.3 122 72.1
Ca_21746_v3 Cicer arietinum L. HOM05D003462 ORTHO05D003946 6.6e-42 174.1 122 71.3
CSS0048759 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 8.6e-42 173.7 123 73.2
Glyma.17G082700 Glycine max HOM05D003462 ORTHO05D003946 8.6e-42 173.7 122 73.0
Duzib084G0277 Durio zibethinus HOM05D003462 ORTHO05D003946 1.1e-41 173.3 122 72.1
CSS0035896 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 1.5e-41 172.9 122 72.1
Lalb_Chr23g0274061 Lupinus albus HOM05D003462 ORTHO05D003946 1.5e-41 172.9 122 69.7
GSVIVG01008179001 Vitis vinifera HOM05D003462 ORTHO05D003946 1.9e-41 172.6 122 70.5
CSS0013858 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 2.5e-41 172.2 123 72.4
Thecc.03G111900 Theobroma cacao HOM05D003462 ORTHO05D003946 2.5e-41 172.2 122 68.9
Gohir.A09G244100 Gossypium hirsutum HOM05D003462 ORTHO05D003946 3.3e-41 171.8 122 71.3
RcHm_v2.0_Chr7g0184041 Rosa chinensis HOM05D003462 ORTHO05D003946 3.3e-41 171.8 122 68.9
HanXRQChr05g0157841 Helianthus annuus HOM05D003462 ORTHO05D003946 4.3e-41 171.4 122 68.9
CSS0029569 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 7.3e-41 170.6 122 70.5
ClCG06G015340 Citrullus lanatus HOM05D003462 ORTHO05D003946 7.3e-41 170.6 122 67.2
Migut.D01481 Erythranthe guttata HOM05D003462 ORTHO05D003946 7.3e-41 170.6 122 68.9
Gohir.D09G245000 Gossypium hirsutum HOM05D003462 ORTHO05D003946 7.3e-41 170.6 122 71.3
MD06G1207100 Malus domestica HOM05D003462 ORTHO05D003946 7.3e-41 170.6 122 68.0
SalBow1G8183 Salvia bowleyana HOM05D003462 ORTHO05D003946 7.3e-41 170.6 122 70.5
Gorai.006G269300 Gossypium raimondii HOM05D003462 ORTHO05D003946 9.5e-41 170.2 122 70.5
A07p39860 Brassica napus HOM05D003462 ORTHO05D003946 2.1e-40 169.1 120 69.2
BraA07t31532Z Brassica rapa HOM05D003462 ORTHO05D003946 2.1e-40 169.1 120 69.2
CSS0043842 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 2.1e-40 169.1 119 70.6
Lalb_Chr12g0197421 Lupinus albus HOM05D003462 ORTHO05D003946 2.1e-40 169.1 122 66.4
Hund02540 Selenicereus undatus HOM05D003462 ORTHO05D003946 2.1e-40 169.1 122 68.0
Carub.0002s2077 Capsella rubella HOM05D003462 ORTHO05D003946 2.8e-40 168.7 120 69.2
CDE06G1115 Ceratophyllum demersum HOM05D003462 ORTHO05D003946 2.8e-40 168.7 122 68.9
Aqoxy3G00588 Aquilegia oxysepala HOM05D003462 ORTHO05D003946 3.6e-40 168.3 122 69.7
BcaC08g46829 Brassica carinata HOM05D003462 ORTHO05D003946 3.6e-40 168.3 120 69.2
C06p48090 Brassica napus HOM05D003462 ORTHO05D007870 3.6e-40 168.3 120 68.3
BolC6t39846H Brassica oleracea HOM05D003462 ORTHO05D003946 3.6e-40 168.3 120 68.3
DCAR_010190 Daucus carota HOM05D003462 ORTHO05D003946 3.6e-40 168.3 122 68.9
MELO3C017261.2 Cucumis melo HOM05D003462 ORTHO05D003946 6.2e-40 167.5 122 65.6
Lsat_1_v5_gn_5_24441 Lactuca sativa HOM05D003462 ORTHO05D003946 6.2e-40 167.5 122 67.2
AT1G73990 Arabidopsis thaliana HOM05D003462 ORTHO05D003946 1.1e-39 166.8 120 67.5
Sabra15G0079500 Salix brachista HOM05D003462 ORTHO05D003946 1.4e-39 166.4 139 62.6
CARHR067120 Cardamine hirsuta HOM05D003462 ORTHO05D003946 1.8e-39 166.0 120 67.5
Atru.chr9.644 Acer truncatum HOM05D003462 ORTHO05D003946 2.3e-39 165.6 122 65.6
AL2G33830 Arabidopsis lyrata HOM05D003462 ORTHO05D003946 2.3e-39 165.6 120 67.5
AUR62032156 Chenopodium quinoa HOM05D003462 ORTHO05D003946 2.3e-39 165.6 122 67.2
AUR62044517 Chenopodium quinoa HOM05D003462 ORTHO05D003946 2.3e-39 165.6 122 67.2
Eucgr.K02831 Eucalyptus grandis HOM05D003462 ORTHO05D003946 5.2e-39 164.5 122 64.8
Glyma.04G158100 Glycine max HOM05D003462 ORTHO05D003946 5.2e-39 164.5 122 68.0
FAN08G2364 Fragaria x ananassa HOM05D003462 ORTHO05D003946 6.8e-39 164.1 120 69.2
TWI81G0217 Tripterygium wilfordii HOM05D003462 ORTHO05D003946 6.8e-39 164.1 122 66.4
Aa31LG4G4310 Aethionema arabicum HOM05D003462 ORTHO05D003946 8.9e-39 163.7 120 67.5
Phvul.009G204100 Phaseolus vulgaris HOM05D003462 ORTHO05D003946 1.2e-38 163.3 122 68.0
Thhalv10018225m.g Eutrema salsugineum HOM05D003462 ORTHO05D003946 2.0e-38 162.5 120 65.8
Sp5g29190 Schrenkiella parvula HOM05D003462 ORTHO05D003946 4.4e-38 161.4 120 66.7
THA.LOC104812124 Tarenaya hassleriana HOM05D003462 ORTHO05D003946 1.3e-37 159.8 120 67.5
MSTRG.4505 Avicennia marina HOM05D003462 ORTHO05D003946 2.2e-37 159.1 122 66.4
PSO017G3345 Papaver somniferum HOM05D003462 ORTHO05D003946 2.2e-37 159.1 122 64.8
Psat1g028640 Pisum sativum HOM05D003462 ORTHO05D003946 2.2e-37 159.1 122 66.4
EL10Ac5g11203 Beta vulgaris HOM05D003462 ORTHO05D003946 3.7e-37 158.3 120 64.2
PSO478G2116 Papaver somniferum HOM05D003462 ORTHO05D003946 3.7e-37 158.3 122 63.9
Glyma.06G207100 Glycine max HOM05D003462 ORTHO05D003946 4.9e-37 157.9 122 64.8
Sc24g0002690 Simmondsia chinensis HOM05D003462 ORTHO05D003946 4.9e-37 157.9 120 61.7
Zm00001eb189850 Zea mays HOM05D003462 ORTHO05D003946 6.4e-37 157.5 121 62.0
Ca_02712_v3 Cicer arietinum L. HOM05D003462 ORTHO05D003946 1.1e-36 156.8 122 67.2
Medtr2g058970 Medicago truncatula HOM05D003462 ORTHO05D003946 1.9e-36 156.0 122 66.4
HPP92_017961 Vanilla planifolia HOM05D003462 ORTHO05D003946 3.2e-36 155.2 122 62.3
MSTRG.9572 Avicennia marina HOM05D003462 ORTHO05D003946 1.3e-34 149.8 122 63.1
Actinidia27195 Actinidia chinensis HOM05D003462 ORTHO05D003946 1.7e-34 149.4 103 71.8
HanXRQChr05g0157881 Helianthus annuus HOM05D003462 ORTHO05D003946 1.7e-34 149.4 122 61.5
CSS0043104 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 3.9e-34 148.3 120 65.8
CSS0028580 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 5.6e-33 144.4 98 74.5
Migut.D01480 Erythranthe guttata HOM05D003462 ORTHO05D003946 2.1e-32 142.5 122 58.2
TPR.G15309 Trifolium pratense HOM05D003462 ORTHO05D003946 4.7e-32 141.4 122 61.5
ATR0691G062 Amborella trichopoda HOM05D003462 ORTHO05D003946 6.2e-32 141.0 122 57.4
HanXRQChr05g0157891 Helianthus annuus HOM05D003462 ORTHO05D003946 1.1e-31 140.2 122 60.7
ATR0691G201 Amborella trichopoda HOM05D003462 ORTHO05D003946 1.8e-31 139.4 122 59.0
Actinidia01422 Actinidia chinensis HOM05D003462 ORTHO05D003946 8.9e-31 137.1 104 68.3
SalBow1G4644 Salvia bowleyana HOM05D003462 ORTHO05D003946 1.2e-30 136.7 118 55.9
arahy.Tifrunner.gnm1.ann1.MSU6B8 Arachis hypogaea HOM05D003462 ORTHO05D003946 5.8e-30 134.4 97 69.1
ECA246G0130 Erigeron canadensis HOM05D003462 ORTHO05D003946 1.3e-29 133.3 92 71.7
Hund09973 Selenicereus undatus HOM05D003462 ORTHO05D003946 2.2e-29 132.5 120 57.5
Actinidia18966 Actinidia chinensis HOM05D003462 ORTHO05D003946 3.8e-29 131.7 83 80.7
arahy.Tifrunner.gnm1.ann1.V9YTQ9 Arachis hypogaea HOM05D003462 ORTHO05D003946 4.9e-29 131.3 97 67.0
SGA_v2.0_scaffold171G38939 Striga asiatica HOM05D003462 ORTHO05D003946 1.1e-28 130.2 123 61.8
unitig_749.g14106 Utricularia gibba HOM05D003462 ORTHO05D003946 7.1e-28 127.5 118 57.6
Cfa017727 Carpinus fangiana HOM05D003462 ORTHO05D003946 2.7e-27 125.6 122 55.7
ECA246G4431 Erigeron canadensis HOM05D003462 ORTHO05D003946 3.5e-27 125.2 116 54.3
SEGI_03657 Sequoiadendron giganteum HOM05D003462 ORTHO05D003946 3.3e-25 118.6 128 54.7
Dinv38623 Davidia involucrata HOM05D003462 ORTHO05D003946 4.3e-25 118.2 75 73.3
Lsat_1_v5_gn_5_24760 Lactuca sativa HOM05D003462 ORTHO05D003946 2.1e-24 115.9 122 53.3
Lsat_1_v5_gn_5_24941 Lactuca sativa HOM05D003462 ORTHO05D003946 3.6e-24 115.2 122 52.5
CSS0043461 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 4.0e-23 111.7 129 52.7
RcHm_v2.0_Chr2g0152701 Rosa chinensis HOM05D003462 ORTHO05D003946 1.9e-20 102.8 71 71.8
CSS0030762 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 1.6e-19 99.8 88 58.0
unitig_22.g6154 Utricularia gibba HOM05D003462 ORTHO05D003946 2.1e-19 99.4 70 72.9
Medtr4g114810 Medicago truncatula HOM05D003462 ORTHO05D003946 4.6e-19 98.2 69 72.5
Cc00_g05440 Coffea canephora HOM05D003462 ORTHO05D003946 6.0e-19 97.8 88 52.3
Medtr5g025810 Medicago truncatula HOM05D003462 ORTHO05D003946 1.7e-18 96.3 82 59.8
AagrBONN_evm.TU.Sc2ySwM_117.3359 Anthoceros agrestis HOM05D003462 ORTHO05D003946 5.1e-18 94.7 126 48.4
RcHm_v2.0_Chr2g0126491 Rosa chinensis HOM05D003462 ORTHO05D003946 8.7e-18 94.0 81 63.0
Mapoly0008s0093 Marchantia polymorpha HOM05D003462 ORTHO05D003946 1.1e-17 93.6 116 51.7
Pp3c3_13550 Physcomitrium patens HOM05D003462 ORTHO05D003946 1.1e-17 93.6 121 47.9
Pp3c3_13555 Physcomitrium patens HOM05D003462 ORTHO05D003946 1.1e-17 93.6 121 47.9
Medtr8g022500 Medicago truncatula HOM05D003462 ORTHO05D003946 1.6e-16 89.7 70 65.7
Medtr4g133130 Medicago truncatula HOM05D000348 ORTHO05D003946 3.1e-15 85.5 53 79.2
SMO147G0360 Selaginella moellendorffii HOM05D003462 ORTHO05D003946 4.0e-15 85.1 99 50.5
Nitab4.5_0002805g0140 Nicotiana tabacum HOM05D003462 ORTHO05D003946 5.3e-15 84.7 45 91.1
AagrBONN_evm.TU.Sc2ySwM_368.89 Anthoceros agrestis HOM05D003462 ORTHO05D003946 1.2e-14 83.6 94 53.2
Medtr4g130360 Medicago truncatula HOM05D003462 ORTHO05D003946 3.4e-14 82.0 61 70.5
GSVIVG01008177001 Vitis vinifera HOM05D003462 ORTHO05D003946 3.4e-14 82.0 46 89.1
Lj1g0015888 Lotus japonicus HOM05D003462 ORTHO05D003946 7.6e-14 80.9 46 87.0
QL10p021433 Quercus lobata HOM05D003462 ORTHO05D003946 7.6e-14 80.9 44 88.6
Medtr8g022470 Medicago truncatula HOM05D003462 ORTHO05D003946 9.9e-14 80.5 55 69.1
Medtr4g112820 Medicago truncatula HOM05D003462 ORTHO05D003946 4.9e-13 78.2 46 82.6
RcHm_v2.0_Chr3g0495421 Rosa chinensis HOM05D003462 ORTHO05D003946 4.9e-13 78.2 46 84.8
Medtr5g083100 Medicago truncatula HOM05D003462 ORTHO05D003946 6.4e-13 77.8 51 70.6
AUR62036912 Chenopodium quinoa HOM05D003462 ORTHO05D003946 1.9e-12 76.3 47 78.7
Rhsim08G0140500 Rhododendron simsii HOM05D003462 ORTHO05D003946 4.2e-12 75.1 42 83.3
AUR62039689 Chenopodium quinoa HOM05D003462 ORTHO05D003946 1.6e-11 73.2 56 67.9
ECA233G4504 Erigeron canadensis HOM05D003462 ORTHO05D003946 1.8e-10 69.7 48 68.8
Medtr4g123500 Medicago truncatula HOM05D003462 ORTHO05D003946 2.5e-09 65.9 61 54.1
Cre10.g444550 Chlamydomonas reinhardtii HOM05D003462 ORTHO05D003946 9.6e-09 63.9 89 44.9
ECA233G4583 Erigeron canadensis HOM05D003462 ORTHO05D003946 2.1e-08 62.8 52 61.5


User provided reference genes

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