Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 1.9e-115 419.1 195 100.0
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 6.3e-95 350.9 169 95.9
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 5.0e-92 341.3 169 93.5
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 3.0e-89 332.0 169 91.1
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 2.2e-84 315.8 161 88.8
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 2.5e-83 312.4 171 84.8
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 3.2e-83 312.0 170 85.3
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 1.2e-82 310.1 173 83.2
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 2.1e-82 309.3 172 83.7
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 2.7e-82 308.9 147 94.6
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 3.6e-82 308.5 175 84.0
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 3.6e-82 308.5 173 84.4
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 6.1e-82 307.8 147 93.9
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 8.0e-82 307.4 147 93.9
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 1.0e-81 307.0 170 84.1
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 1.0e-81 307.0 168 85.1
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 1.4e-81 306.6 161 88.2
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 2.3e-81 305.8 147 93.9
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 3.0e-81 305.4 147 93.2
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 3.0e-81 305.4 173 80.9
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 4.0e-81 305.1 146 93.8
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 4.0e-81 305.1 146 93.8
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 4.0e-81 305.1 152 90.1
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 4.0e-81 305.1 169 83.4
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 5.2e-81 304.7 161 87.0
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 5.2e-81 304.7 147 92.5
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 6.8e-81 304.3 174 81.0
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 8.8e-81 303.9 157 87.9
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 1.5e-80 303.1 165 84.2
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 1.5e-80 303.1 176 81.2
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 1.5e-80 303.1 163 87.1
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 1.5e-80 303.1 147 92.5
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 2.0e-80 302.8 147 91.8
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 2.0e-80 302.8 147 91.8
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 2.0e-80 302.8 164 84.8
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 2.6e-80 302.4 168 81.5
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 2.6e-80 302.4 161 86.3
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 3.4e-80 302.0 165 82.4
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 3.4e-80 302.0 147 91.8
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 3.4e-80 302.0 165 83.0
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 3.4e-80 302.0 168 81.0
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 3.4e-80 302.0 175 79.4
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 4.4e-80 301.6 146 92.5
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 4.4e-80 301.6 166 81.9
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 4.4e-80 301.6 167 82.0
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 4.4e-80 301.6 147 93.2
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 4.4e-80 301.6 147 93.2
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 4.4e-80 301.6 163 84.7
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 4.4e-80 301.6 167 84.4
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 5.7e-80 301.2 163 85.9
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 5.7e-80 301.2 163 85.9
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 5.7e-80 301.2 147 91.2
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 7.5e-80 300.8 167 82.6
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 7.5e-80 300.8 146 90.4
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 7.5e-80 300.8 146 90.4
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 7.5e-80 300.8 146 90.4
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 7.5e-80 300.8 146 90.4
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 7.5e-80 300.8 147 92.5
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 9.8e-80 300.4 146 90.4
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 9.8e-80 300.4 161 85.1
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 9.8e-80 300.4 175 78.9
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 9.8e-80 300.4 147 90.5
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 1.3e-79 300.1 170 84.1
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 1.3e-79 300.1 161 85.1
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.3e-79 300.1 161 85.1
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 1.3e-79 300.1 142 95.1
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 1.3e-79 300.1 142 95.1
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 1.7e-79 299.7 157 87.3
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 2.2e-79 299.3 143 93.7
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 2.2e-79 299.3 160 85.6
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 2.8e-79 298.9 169 79.3
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 3.7e-79 298.5 161 84.5
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 6.3e-79 297.7 170 82.9
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 6.3e-79 297.7 161 85.1
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 8.3e-79 297.4 164 82.3
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 8.3e-79 297.4 161 86.3
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 1.1e-78 297.0 145 90.3
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 1.4e-78 296.6 142 93.7
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 2.4e-78 295.8 147 89.8
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 2.4e-78 295.8 147 89.8
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 2.4e-78 295.8 147 89.8
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 2.4e-78 295.8 175 79.4
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 2.4e-78 295.8 162 84.6
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 3.1e-78 295.4 141 94.3
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 3.1e-78 295.4 161 81.4
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 5.4e-78 294.7 144 91.7
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 2.7e-77 292.4 163 82.2
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 5.9e-77 291.2 144 89.6
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 7.7e-77 290.8 184 74.5
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 1.3e-76 290.0 161 82.0
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 2.9e-76 288.9 141 90.8
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 1.1e-75 287.0 139 92.1
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 1.1e-75 287.0 143 89.5
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 5.5e-75 284.6 164 80.5
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 1.2e-74 283.5 141 87.9
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 8.8e-73 277.3 146 84.9
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 3.4e-72 275.4 132 90.2
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 2.0e-69 266.2 146 82.2
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 2.8e-66 255.8 171 74.9
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 8.0e-66 254.2 140 77.9
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 1.0e-65 253.8 147 72.1
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 5.7e-64 248.1 140 75.0
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 5.7e-64 248.1 120 96.7
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 1.3e-63 246.9 141 73.0
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 2.3e-49 199.5 96 88.5
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 3.4e-48 195.7 104 81.7
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 6.0e-45 184.9 97 87.6
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 5.6e-43 178.3 86 88.4
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 4.7e-42 175.3 130 69.2
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 4.7e-42 175.3 91 84.6
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 8.1e-42 174.5 100 79.0
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 1.4e-41 173.7 120 75.0
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 1.2e-40 170.6 86 86.0
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 7.3e-35 151.4 86 74.4
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 1.1e-22 110.9 53 88.7
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 2.4e-22 109.8 52 88.5
Lj1C79T15 Lonicera japonica HOM05D004940 ORTHO05D048414 4.2e-22 109.0 77 68.8
SEGI_00315 Sequoiadendron giganteum HOM05D004940 ORTHO05D048414 7.6e-16 88.2 65 64.6
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 4.9e-15 85.5 142 36.6
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 1.3e-10 70.9 31 93.5
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 4.8e-10 68.9 44 63.6
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 1.1e-06 57.8 132 30.3
Sed0011237 Sechium edule HOM05D001762 ORTHO05D001774 1.1e-06 57.8 155 27.7


User provided reference genes

Program Settings