Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401024210 Solanum tuberosum HOM05D003221 ORTHO05D016442 5.7e-77 290.8 144 100.0
Solyc07g009140.3 Solanum lycopersicum HOM05D003221 ORTHO05D004432 2.1e-39 166.0 92 92.4
Sopen07g017130 Solanum pennellii HOM05D003221 ORTHO05D004432 2.1e-39 166.0 92 92.4
PGSC0003DMG402024210 Solanum tuberosum HOM05D003221 ORTHO05D004432 2.1e-39 166.0 92 92.4
CAN.G990.3 Capsicum annuum HOM05D003221 ORTHO05D016442 4.3e-32 141.7 88 80.7
CAN.G5443.1 Capsicum annuum HOM05D003221 ORTHO05D004432 5.6e-32 141.4 92 77.2
Nitab4.5_0000366g0070 Nicotiana tabacum HOM05D003221 ORTHO05D004432 2.8e-31 139.0 92 76.1
Nitab4.5_0006219g0010 Nicotiana tabacum HOM05D003221 ORTHO05D004432 2.4e-30 136.0 92 75.0
Peaxi162Scf00324g00334 Petunia axillaris HOM05D003221 ORTHO05D004432 3.1e-30 135.6 92 75.0
Lj9A475T64 Lonicera japonica HOM05D003221 ORTHO05D004432 8.7e-25 117.5 92 63.0
Oeu058314.2 Olea europaea HOM05D003221 ORTHO05D016442 1.1e-24 117.1 107 57.9
ClCG03G003520 Citrullus lanatus HOM05D003221 ORTHO05D004432 1.9e-24 116.3 92 62.0
Lj5A100G57 Lonicera japonica HOM05D003221 ORTHO05D004432 1.9e-24 116.3 92 63.0
CsaV3_1G009320 Cucumis sativus L. HOM05D003221 ORTHO05D004432 2.5e-24 115.9 92 60.9
Nn3g16577 Nelumbo nucifera HOM05D003221 ORTHO05D004432 3.3e-24 115.5 92 60.9
Prupe.5G156700 Prunus persica HOM05D003221 ORTHO05D004432 9.6e-24 114.0 92 62.0
HanXRQChr09g0272871 Helianthus annuus HOM05D003221 ORTHO05D004432 1.2e-23 113.6 92 62.0
Sed0024107 Sechium edule HOM05D003221 ORTHO05D004432 1.2e-23 113.6 92 59.8
Manes.06G115400 Manihot esculenta HOM05D003221 ORTHO05D004432 1.6e-23 113.2 92 58.7
MELO3C002335.2 Cucumis melo HOM05D003221 ORTHO05D004432 2.1e-23 112.8 92 59.8
Lsat_1_v5_gn_4_78821 Lactuca sativa HOM05D003221 ORTHO05D004432 2.1e-23 112.8 92 60.9
Manes.14G055233 Manihot esculenta HOM05D003221 ORTHO05D004432 4.7e-23 111.7 92 58.7
Sabra15G0113000 Salix brachista HOM05D003221 ORTHO05D004432 4.7e-23 111.7 91 59.3
Cpa.g.sc4.74 Carica papaya HOM05D003221 ORTHO05D004432 6.2e-23 111.3 92 56.5
Migut.I00477 Erythranthe guttata HOM05D003221 ORTHO05D004432 6.2e-23 111.3 92 59.8
Potri.012G093500 Populus trichocarpa HOM05D003221 ORTHO05D004432 1.4e-22 110.2 92 57.6
Potri.015G090900 Populus trichocarpa HOM05D003221 ORTHO05D004432 1.4e-22 110.2 92 57.6
Cc04_g10290 Coffea canephora HOM05D003221 ORTHO05D004432 1.8e-22 109.8 81 64.2
MD14G1163300 Malus domestica HOM05D003221 ORTHO05D004432 1.8e-22 109.8 92 58.7
vmacro19238 Vaccinium macrocarpon HOM05D003221 ORTHO05D004432 2.4e-22 109.4 92 57.6
MSTRG.22924 Avicennia marina HOM05D003221 ORTHO05D004432 4.0e-22 108.6 92 59.8
THA.LOC104825005 Tarenaya hassleriana HOM05D003221 ORTHO05D004432 5.2e-22 108.2 88 58.0
MSTRG.4587 Avicennia marina HOM05D003221 ORTHO05D004432 6.9e-22 107.8 92 57.6
MD06G1156100 Malus domestica HOM05D003221 ORTHO05D004432 6.9e-22 107.8 91 59.3
Rhsim08G0185100 Rhododendron simsii HOM05D003221 ORTHO05D004432 6.9e-22 107.8 92 56.5
DCAR_027511 Daucus carota HOM05D003221 ORTHO05D004432 9.0e-22 107.5 92 59.8
TWI39G0859 Tripterygium wilfordii HOM05D003221 ORTHO05D004432 9.0e-22 107.5 92 55.4
TAR371G1119 Trochodendron aralioides HOM05D003221 ORTHO05D004432 9.0e-22 107.5 92 58.7
Aqoxy1G01463 Aquilegia oxysepala HOM05D003221 ORTHO05D004432 1.2e-21 107.1 92 55.4
C07p53800 Brassica napus HOM05D003221 ORTHO05D004432 1.2e-21 107.1 88 58.0
Actinidia25611 Actinidia chinensis HOM05D003221 ORTHO05D004432 1.5e-21 106.7 92 56.5
BcaB03g12449 Brassica carinata HOM05D003221 ORTHO05D004432 1.5e-21 106.7 88 56.8
A08p21360 Brassica napus HOM05D003221 ORTHO05D004432 1.5e-21 106.7 88 56.8
BraA08t34085Z Brassica rapa HOM05D003221 ORTHO05D004432 1.5e-21 106.7 88 56.8
Duzib084G0381 Durio zibethinus HOM05D003221 ORTHO05D004432 1.5e-21 106.7 93 58.1
BcaC06g32856 Brassica carinata HOM05D003221 ORTHO05D004432 2.0e-21 106.3 88 56.8
C01p20120 Brassica napus HOM05D003221 ORTHO05D004432 2.0e-21 106.3 88 56.8
BolC7t45870H Brassica oleracea HOM05D003221 ORTHO05D004432 2.0e-21 106.3 88 56.8
FvH4_3g25540 Fragaria vesca HOM05D003221 ORTHO05D004432 2.0e-21 106.3 92 58.7
FAN11G1198 Fragaria x ananassa HOM05D003221 ORTHO05D004432 2.0e-21 106.3 92 58.7
MD06G1151500 Malus domestica HOM05D003221 ORTHO05D004432 2.0e-21 106.3 92 56.5
Sp7g22810 Schrenkiella parvula HOM05D003221 ORTHO05D004432 2.0e-21 106.3 88 56.8
SGA_v2.0_scaffold350G49637 Striga asiatica HOM05D003221 ORTHO05D004432 2.0e-21 106.3 92 58.7
BcaC07g38153 Brassica carinata HOM05D003221 ORTHO05D004432 2.6e-21 105.9 88 56.8
BolC8t48588H Brassica oleracea HOM05D003221 ORTHO05D004432 2.6e-21 105.9 88 56.8
FAN16G0231 Fragaria x ananassa HOM05D003221 ORTHO05D004432 2.6e-21 105.9 92 57.6
FAN21G3720 Fragaria x ananassa HOM05D003221 ORTHO05D004432 2.6e-21 105.9 92 57.6
FAN25G3633 Fragaria x ananassa HOM05D003221 ORTHO05D004432 2.6e-21 105.9 92 57.6
HanXRQChr16g0497921 Helianthus annuus HOM05D003221 ORTHO05D004432 2.6e-21 105.9 92 56.5
A03p55560 Brassica napus HOM05D003221 ORTHO05D004432 3.4e-21 105.5 88 55.7
BraA03t14625Z Brassica rapa HOM05D003221 ORTHO05D004432 3.4e-21 105.5 88 55.7
QL10p005036 Quercus lobata HOM05D003221 ORTHO05D004432 3.4e-21 105.5 88 59.1
RcHm_v2.0_Chr7g0191061 Rosa chinensis HOM05D003221 ORTHO05D004432 3.4e-21 105.5 92 57.6
THA.LOC104811603 Tarenaya hassleriana HOM05D003221 ORTHO05D004432 3.4e-21 105.5 88 56.8
Eucgr.K02756 Eucalyptus grandis HOM05D003221 ORTHO05D004432 4.4e-21 105.1 92 55.4
PSO063G7046 Papaver somniferum HOM05D003221 ORTHO05D004432 4.4e-21 105.1 92 54.3
TWI14G1333 Tripterygium wilfordii HOM05D003221 ORTHO05D004432 4.4e-21 105.1 92 55.4
A01p16130 Brassica napus HOM05D003221 ORTHO05D004432 5.8e-21 104.8 88 55.7
BolC1t01941H Brassica oleracea HOM05D003221 ORTHO05D004432 5.8e-21 104.8 88 55.7
BraA01t01549Z Brassica rapa HOM05D003221 ORTHO05D004432 5.8e-21 104.8 88 55.7
ECA232G2465 Erigeron canadensis HOM05D003221 ORTHO05D004432 5.8e-21 104.8 92 57.6
PSO782G0707 Papaver somniferum HOM05D003221 ORTHO05D004432 5.8e-21 104.8 92 55.4
AL7G28360 Arabidopsis lyrata HOM05D003221 ORTHO05D004432 9.9e-21 104.0 88 56.8
BcaNung07243 Brassica carinata HOM05D003221 ORTHO05D004432 9.9e-21 104.0 88 55.7
Hma1.2p1_0209F.1_g088430 Hydrangea macrophylla HOM05D003221 ORTHO05D004432 1.3e-20 103.6 73 67.1
PSO170G4862 Papaver somniferum HOM05D003221 ORTHO05D004432 1.3e-20 103.6 92 55.4
Thhalv10025431m.g Eutrema salsugineum HOM05D003221 ORTHO05D004432 1.7e-20 103.2 88 55.7
PSO445G0024 Papaver somniferum HOM05D003221 ORTHO05D004432 2.2e-20 102.8 92 54.3
PGR083G1499 Punica granatum HOM05D003221 ORTHO05D004432 2.2e-20 102.8 92 55.4
VMungo1215G0589 Vigna mungo HOM05D003221 ORTHO05D004432 2.2e-20 102.8 92 55.4
Gohir.A03G062400 Gossypium hirsutum HOM05D003221 ORTHO05D004432 2.9e-20 102.4 93 54.8
Gohir.A09G245000 Gossypium hirsutum HOM05D003221 ORTHO05D004432 3.8e-20 102.1 93 54.8
MBI11_g19363_MAGBIO Magnolia biondii HOM05D003221 ORTHO05D004432 3.8e-20 102.1 78 62.8
Phvul.003G208200 Phaseolus vulgaris HOM05D003221 ORTHO05D004432 4.9e-20 101.7 92 54.3
CARHR232220 Cardamine hirsuta HOM05D003221 ORTHO05D004432 6.4e-20 101.3 88 53.4
Gohir.A12G188100 Gossypium hirsutum HOM05D003221 ORTHO05D004432 6.4e-20 101.3 93 55.9
Thecc.03G123100 Theobroma cacao HOM05D003221 ORTHO05D004432 8.4e-20 100.9 93 55.9
AT4G24820 Arabidopsis thaliana HOM05D003221 ORTHO05D004432 1.1e-19 100.5 88 54.5
A09p13870 Brassica napus HOM05D003221 ORTHO05D016442 1.4e-19 100.1 79 58.2
Carub.0007s1623 Capsella rubella HOM05D003221 ORTHO05D004432 1.4e-19 100.1 88 55.7
Gohir.D03G103700 Gossypium hirsutum HOM05D003221 ORTHO05D004432 1.4e-19 100.1 93 53.8
Gohir.D09G245900 Gossypium hirsutum HOM05D003221 ORTHO05D004432 1.4e-19 100.1 93 53.8
Gorai.003G109300 Gossypium raimondii HOM05D003221 ORTHO05D004432 1.4e-19 100.1 93 53.8
Gorai.006G270400 Gossypium raimondii HOM05D003221 ORTHO05D004432 1.4e-19 100.1 93 53.8
vmacro01936 Vaccinium macrocarpon HOM05D003221 ORTHO05D004432 1.4e-19 100.1 88 54.5
Aa31LG7G11020 Aethionema arabicum HOM05D003221 ORTHO05D004432 1.9e-19 99.8 90 53.3
Cfa018890 Carpinus fangiana HOM05D003221 ORTHO05D004432 2.4e-19 99.4 92 54.3
QL05p040991 Quercus lobata HOM05D003221 ORTHO05D004432 2.4e-19 99.4 73 67.1
Eucgr.I00301 Eucalyptus grandis HOM05D003221 ORTHO05D004432 3.2e-19 99.0 92 51.1
COL.COLO4_22963 Corchorus olitorius HOM05D003221 ORTHO05D004432 4.2e-19 98.6 93 54.8
Duzib205G0731 Durio zibethinus HOM05D003221 ORTHO05D004432 4.2e-19 98.6 93 55.9
Gohir.D12G190900 Gossypium hirsutum HOM05D003221 ORTHO05D004432 4.2e-19 98.6 93 54.8
Gorai.008G204800 Gossypium raimondii HOM05D003221 ORTHO05D004432 4.2e-19 98.6 93 54.8
Hma1.2p1_0046F.1_g027520 Hydrangea macrophylla HOM05D003221 ORTHO05D004432 4.2e-19 98.6 71 64.8
unitig_747.g21330 Utricularia gibba HOM05D003221 ORTHO05D004432 4.2e-19 98.6 80 60.0
HPP92_024646 Vanilla planifolia HOM05D003221 ORTHO05D004432 4.2e-19 98.6 92 53.3
CDE04G0976 Ceratophyllum demersum HOM05D003221 ORTHO05D004432 7.1e-19 97.8 92 51.1
Haze_07275 Corylus avellana HOM05D003221 ORTHO05D004630 7.1e-19 97.8 92 54.3
Duzib068G0069 Durio zibethinus HOM05D003221 ORTHO05D004432 9.3e-19 97.4 93 51.6
Sc04g0000950 Simmondsia chinensis HOM05D003221 ORTHO05D004432 9.3e-19 97.4 92 53.3
HPP92_024650 Vanilla planifolia HOM05D003221 ORTHO05D016442 2.1e-18 96.3 83 56.6
CDE07G0656 Ceratophyllum demersum HOM05D003221 ORTHO05D004432 2.7e-18 95.9 92 50.0
Actinidia25612 Actinidia chinensis HOM05D003221 ORTHO05D016442 3.5e-18 95.5 82 54.9
EL10Ac7g18076 Beta vulgaris HOM05D003221 ORTHO05D004432 7.8e-18 94.4 92 50.0
Ah.15g095310 Amaranthus hybridus HOM05D003221 ORTHO05D004432 1.0e-17 94.0 92 50.0
CiPaw.12G035900 Carya illinoinensis HOM05D003221 ORTHO05D004432 1.0e-17 94.0 79 58.2
SHI33980 Sapria himalayana HOM05D003221 ORTHO05D004432 1.0e-17 94.0 88 51.1
Lj4g0007668 Lotus japonicus HOM05D003221 ORTHO05D004432 1.3e-17 93.6 78 59.0
Os04g0485000 Oryza sativa ssp. japonica HOM05D003221 ORTHO05D004432 3.0e-17 92.4 89 55.1
Sed0014675 Sechium edule HOM05D003221 ORTHO05D004432 3.9e-17 92.0 71 60.6
SEGI_11838 Sequoiadendron giganteum HOM05D003221 ORTHO05D004432 3.9e-17 92.0 92 47.8
Dinv11105 Davidia involucrata HOM05D003221 ORTHO05D004432 8.7e-17 90.9 67 62.7
Nn4g22458 Nelumbo nucifera HOM05D003221 ORTHO05D004432 1.1e-16 90.5 68 61.8
Psat0s5008g0040 Pisum sativum HOM05D003221 ORTHO05D016442 1.1e-16 90.5 85 57.6
Atru.chr9.1015 Acer truncatum HOM05D003221 ORTHO05D004432 1.5e-16 90.1 73 58.9
ATR0824G170 Amborella trichopoda HOM05D003221 ORTHO05D004432 1.5e-16 90.1 92 52.2
AUR62001280 Chenopodium quinoa HOM05D003221 ORTHO05D004432 1.5e-16 90.1 92 50.0
Zm00001eb246330 Zea mays HOM05D003221 ORTHO05D004432 1.5e-16 90.1 89 53.9
AUR62025726 Chenopodium quinoa HOM05D003221 ORTHO05D004432 1.9e-16 89.7 92 48.9
GSVIVG01007538001 Vitis vinifera HOM05D003221 ORTHO05D004432 1.9e-16 89.7 70 61.4
CANSAT80G0340 Cannabis sativa HOM05D003221 ORTHO05D004432 2.5e-16 89.4 78 57.7
Hund05648 Selenicereus undatus HOM05D003221 ORTHO05D004432 5.6e-16 88.2 101 48.5
SEGI_29907 Sequoiadendron giganteum HOM05D003221 ORTHO05D016442 5.6e-16 88.2 93 46.2
Lalb_Chr08g0236971 Lupinus albus HOM05D003221 ORTHO05D004432 9.6e-16 87.4 92 48.9
Dinv38467 Davidia involucrata HOM05D003221 ORTHO05D004432 1.3e-15 87.0 63 63.5
Lj5g0004669 Lotus japonicus HOM05D003221 ORTHO05D004432 1.3e-15 87.0 77 57.1
Oeu033323.1 Olea europaea HOM05D003221 ORTHO05D004432 1.3e-15 87.0 57 71.9
Os02g0600100 Oryza sativa ssp. japonica HOM05D003221 ORTHO05D004432 2.1e-15 86.3 89 50.6
Actinidia16191 Actinidia chinensis HOM05D003221 ORTHO05D004432 4.8e-15 85.1 63 61.9
SalBow5G2462 Salvia bowleyana HOM05D003221 ORTHO05D004432 6.2e-15 84.7 67 61.2
Ciclev10020559m.g Citrus clementina HOM05D003221 ORTHO05D004432 1.8e-14 83.2 76 57.9
Glyma.05G044500 Glycine max HOM05D003221 ORTHO05D004432 2.4e-14 82.8 70 57.1
TPR.G37528 Trifolium pratense HOM05D003221 ORTHO05D004432 5.3e-14 81.6 88 48.9
Glyma.17G127100 Glycine max HOM05D003221 ORTHO05D004432 6.9e-14 81.3 67 59.7
Lalb_Chr07g0183231 Lupinus albus HOM05D003221 ORTHO05D004432 1.2e-13 80.5 68 57.4
Ah.08g218090 Amaranthus hybridus HOM05D003221 ORTHO05D004432 2.6e-13 79.3 71 50.7
Pp3c12_14600 Physcomitrium patens HOM05D003221 ORTHO05D004432 1.7e-12 76.6 92 43.5
arahy.Tifrunner.gnm1.ann1.BX07LP Arachis hypogaea HOM05D003221 ORTHO05D004432 2.9e-12 75.9 63 55.6
arahy.Tifrunner.gnm1.ann1.UKG7ME Arachis hypogaea HOM05D003221 ORTHO05D004432 2.9e-12 75.9 63 55.6
Os01g0974900 Oryza sativa ssp. japonica HOM05D003221 ORTHO05D016442 1.4e-11 73.6 76 52.6
Pp3c10_7470 Physcomitrium patens HOM05D003221 ORTHO05D004432 2.4e-11 72.8 92 40.2
Ca_05563_v3 Cicer arietinum L. HOM05D003221 ORTHO05D004432 1.6e-10 70.1 59 59.3
Glyma.05G044900 Glycine max HOM05D003221 ORTHO05D004432 1.6e-10 70.1 64 56.2
AagrBONN_evm.TU.Sc2ySwM_344.2231 Anthoceros agrestis HOM05D003221 ORTHO05D004432 4.6e-10 68.6 92 38.0
Medtr4g104080 Medicago truncatula HOM05D003221 ORTHO05D004432 1.0e-09 67.4 59 55.9
Lalb_Chr23g0273491 Lupinus albus HOM05D003221 ORTHO05D004432 1.3e-09 67.0 67 47.8
Pp3c4_2100 Physcomitrium patens HOM05D003221 ORTHO05D004432 3.0e-09 65.9 76 42.1
SMO118G0024 Selaginella moellendorffii HOM05D003221 ORTHO05D004432 3.0e-09 65.9 89 39.3
Os02g0599151 Oryza sativa ssp. japonica HOM05D002088 ORTHO05D294445 5.1e-09 65.1 56 57.1
TPR.G16844 Trifolium pratense HOM05D003221 ORTHO05D004432 5.1e-09 65.1 59 54.2
SEGI_06373 Sequoiadendron giganteum HOM05D003221 ORTHO05D016442 1.4e-06 57.0 42 57.1


User provided reference genes

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