Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 4.3e-167 591.3 305 100.0
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 1.7e-150 536.2 305 90.5
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 1.8e-149 532.7 305 89.2
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 3.7e-134 481.9 318 79.9
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 3.0e-128 462.2 306 78.4
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 2.0e-124 449.5 299 79.3
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 4.7e-113 411.8 301 72.4
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 6.1e-113 411.4 307 71.3
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 1.0e-112 410.6 305 70.2
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 2.3e-112 409.5 306 69.6
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 3.0e-112 409.1 306 69.3
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 4.1e-101 372.1 316 62.7
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 1.1e-96 357.5 316 61.1
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 1.2e-95 354.0 266 67.3
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 1.5e-95 353.6 307 59.6
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 9.8e-95 350.9 298 61.7
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 1.3e-94 350.5 313 61.0
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 1.7e-94 350.1 308 61.4
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 4.9e-94 348.6 292 61.0
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 6.4e-94 348.2 280 62.5
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 6.4e-94 348.2 291 62.9
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 8.3e-94 347.8 300 60.7
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 1.1e-93 347.4 316 58.9
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 1.2e-92 344.0 308 59.7
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 2.1e-92 343.2 281 61.9
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 2.1e-92 343.2 259 66.0
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 2.7e-92 342.8 240 69.2
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 2.7e-92 342.8 240 69.2
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 2.7e-92 342.8 240 69.2
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 2.3e-91 339.7 263 66.2
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 3.0e-91 339.3 283 63.6
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 3.9e-91 339.0 265 64.9
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 5.1e-91 338.6 265 64.2
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 5.1e-91 338.6 257 65.8
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 6.6e-91 338.2 307 62.5
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 6.6e-91 338.2 326 56.7
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 6.6e-91 338.2 326 56.7
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 8.6e-91 337.8 292 59.6
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 8.6e-91 337.8 311 58.8
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 1.5e-90 337.0 309 57.0
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 1.5e-90 337.0 301 59.8
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 1.9e-90 336.7 293 59.0
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 2.5e-90 336.3 301 59.8
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 3.3e-90 335.9 281 61.9
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 7.3e-90 334.7 261 62.5
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 9.5e-90 334.3 311 60.5
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 1.2e-89 334.0 292 63.4
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.2e-89 334.0 269 63.2
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 2.8e-89 332.8 292 59.9
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 3.6e-89 332.4 283 60.8
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 4.7e-89 332.0 312 57.1
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 6.2e-89 331.6 257 64.6
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 8.1e-89 331.3 250 65.2
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 8.1e-89 331.3 282 63.5
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 1.1e-88 330.9 296 59.1
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 1.1e-88 330.9 252 64.7
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 1.4e-88 330.5 296 59.1
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 1.8e-88 330.1 305 59.0
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 2.3e-88 329.7 262 63.4
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 3.1e-88 329.3 305 58.7
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 5.2e-88 328.6 306 59.8
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 1.5e-87 327.0 240 67.1
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 2.0e-87 326.6 252 71.4
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 2.0e-87 326.6 261 62.5
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 2.0e-87 326.6 255 64.3
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 2.0e-87 326.6 320 55.9
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 4.4e-87 325.5 256 63.7
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 5.8e-87 325.1 314 55.7
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 9.9e-87 324.3 295 60.3
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 1.3e-86 323.9 294 56.8
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 1.7e-86 323.6 286 60.1
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 1.7e-86 323.6 295 60.0
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 3.8e-86 322.4 236 66.9
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 3.8e-86 322.4 298 57.0
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 8.4e-86 321.2 284 60.6
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 8.4e-86 321.2 280 60.0
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 8.4e-86 321.2 291 56.4
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 8.4e-86 321.2 291 56.4
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 8.4e-86 321.2 236 66.1
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 8.4e-86 321.2 302 56.6
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 1.4e-85 320.5 253 65.2
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 1.9e-85 320.1 291 57.0
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 2.4e-85 319.7 295 56.6
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 9.2e-85 317.8 303 56.4
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 9.2e-85 317.8 250 63.6
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.2e-84 317.4 225 70.2
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 1.2e-84 317.4 276 59.4
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 2.1e-84 316.6 291 56.4
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 2.7e-84 316.2 291 56.0
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 6.0e-84 315.1 273 58.2
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 7.8e-84 314.7 296 58.1
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 1.7e-83 313.5 255 60.8
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 2.3e-83 313.2 246 62.6
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 3.0e-83 312.8 272 56.2
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 3.0e-83 312.8 292 59.6
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 5.1e-83 312.0 272 56.2
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 5.1e-83 312.0 284 58.8
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 6.6e-83 311.6 276 56.9
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 6.6e-83 311.6 236 65.7
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 8.6e-83 311.2 315 53.0
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 1.1e-82 310.8 258 59.3
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 1.1e-82 310.8 281 55.9
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 1.1e-82 310.8 281 55.9
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 1.1e-82 310.8 280 57.1
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 1.9e-82 310.1 237 65.4
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 2.5e-82 309.7 281 55.9
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 3.6e-81 305.8 282 56.4
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 3.6e-81 305.8 229 67.2
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 1.1e-80 304.3 288 54.9
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 1.4e-80 303.9 279 56.3
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 1.8e-80 303.5 320 50.6
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 3.1e-80 302.8 258 56.2
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 6.9e-80 301.6 266 57.9
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 3.8e-78 295.8 246 60.6
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 2.1e-76 290.0 256 56.2
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 3.5e-76 289.3 354 46.6
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 1.7e-75 287.0 280 53.2
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 5.1e-75 285.4 237 60.8
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 8.7e-75 284.6 254 60.2
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 1.9e-74 283.5 287 54.7
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 1.9e-74 283.5 225 61.3
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 4.3e-74 282.3 290 54.1
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 4.3e-74 282.3 218 65.1
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.6e-73 280.4 266 57.1
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 2.4e-72 276.6 239 60.7
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 6.9e-72 275.0 239 56.1
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 3.4e-71 272.7 259 54.4
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 7.1e-69 265.0 259 52.9
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 1.8e-67 260.4 261 51.3
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 5.1e-67 258.8 326 47.9
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 2.5e-66 256.5 352 45.5
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 4.8e-65 252.3 258 55.0
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 3.3e-58 229.6 250 46.0
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 4.8e-57 225.7 221 51.6
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 5.3e-56 222.2 305 40.7
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 3.8e-54 216.1 256 46.5
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 3.8e-54 216.1 231 46.8
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 8.4e-54 214.9 174 61.5
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 2.1e-52 210.3 410 35.6
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 1.8e-48 197.2 227 45.8
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 4.5e-47 192.6 187 55.1
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 1.4e-45 187.6 311 40.5
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 3.6e-44 183.0 133 66.2
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 2.5e-42 176.8 127 66.9
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 1.1e-40 171.4 172 49.4
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 5.0e-38 162.5 123 65.0
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 5.2e-27 125.9 126 50.8
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 2.0e-23 114.0 74 81.1
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 4.2e-21 106.3 93 50.5
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 4.0e-19 99.8 76 63.2
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 3.3e-18 96.7 74 63.5
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 1.2e-12 78.2 69 59.4
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 8.0e-12 75.5 185 32.4
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 1.4e-11 74.7 85 42.4
ECA246G1777 Erigeron canadensis HOM05D002234 ORTHO05D002254 2.2e-09 67.4 241 26.1
FvH4_5g22910 Fragaria vesca HOM05D002234 ORTHO05D002254 2.2e-09 67.4 238 27.7
FAN08G1341 Fragaria x ananassa HOM05D002234 ORTHO05D002254 2.2e-09 67.4 246 25.2
Hund21439 Selenicereus undatus HOM05D002234 ORTHO05D002254 2.2e-09 67.4 201 27.4
FAN04G0881 Fragaria x ananassa HOM05D002234 ORTHO05D002254 6.3e-09 65.9 238 27.7
HPP92_003058 Vanilla planifolia HOM05D002234 ORTHO05D002254 3.1e-08 63.5 206 26.7
VMungo1215G0334 Vigna mungo HOM05D002234 ORTHO05D002254 4.1e-08 63.2 193 30.6
CANSAT21G1663 Cannabis sativa HOM05D002234 ORTHO05D002254 9.1e-08 62.0 194 27.8
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 1.2e-07 61.6 51 56.9
TAR375G0159 Trochodendron aralioides HOM05D002234 ORTHO05D002254 1.2e-07 61.6 201 29.9
Thecc.03G308900 Theobroma cacao HOM05D002234 ORTHO05D002254 2.7e-07 60.5 200 28.0
ATR0624G044 Amborella trichopoda HOM05D002234 ORTHO05D002254 3.5e-07 60.1 201 25.4
CiPaw.12G067500 Carya illinoinensis HOM05D002234 ORTHO05D002254 5.9e-07 59.3 195 29.2
DCAR_027858 Daucus carota HOM05D002234 ORTHO05D002254 5.9e-07 59.3 298 25.2
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 2.3e-06 57.4 48 64.6
Hund11194 Selenicereus undatus HOM05D002234 ORTHO05D002254 3.8e-06 56.6 201 29.4
Gorai.006G217700 Gossypium raimondii HOM05D002234 ORTHO05D002254 6.5e-06 55.8 193 25.9


User provided reference genes

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