Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401022673 Solanum tuberosum HOM05D001137 ORTHO05D005066 1.7e-166 589.3 316 100.0
CAN.G580.11 Capsicum annuum HOM05D001137 ORTHO05D005066 1.7e-134 483.0 323 84.5
Sopen01g029390 Solanum pennellii HOM05D001137 ORTHO05D005066 8.0e-132 474.2 316 85.4
Nitab4.5_0000829g0190 Nicotiana tabacum HOM05D001137 ORTHO05D005066 2.2e-129 466.1 323 80.5
Solyc01g067480.4 Solanum lycopersicum HOM05D001137 ORTHO05D005066 1.2e-127 460.3 316 83.5
Nitab4.5_0000644g0060 Nicotiana tabacum HOM05D001137 ORTHO05D005066 4.7e-124 448.4 350 74.3
Peaxi162Scf00386g00616 Petunia axillaris HOM05D001137 ORTHO05D005066 3.4e-122 442.2 325 76.0
SalBow2G1809 Salvia bowleyana HOM05D001137 ORTHO05D005066 3.9e-86 322.4 335 57.3
Hma1.2p1_0698F.1_g205450 Hydrangea macrophylla HOM05D001137 ORTHO05D005066 7.3e-85 318.2 328 62.2
vmacro22477 Vaccinium macrocarpon HOM05D001137 ORTHO05D005066 9.9e-82 307.8 327 58.7
Nn4g25962 Nelumbo nucifera HOM05D001137 ORTHO05D005066 3.2e-80 302.8 330 57.0
Cc03_g02170 Coffea canephora HOM05D001137 ORTHO05D005066 7.1e-80 301.6 326 58.0
RcHm_v2.0_Chr4g0421431 Rosa chinensis HOM05D001137 ORTHO05D005066 7.8e-79 298.1 327 57.8
Migut.G00190 Erythranthe guttata HOM05D001137 ORTHO05D005066 1.4e-75 287.3 325 58.2
Lj3C813G4 Lonicera japonica HOM05D001137 ORTHO05D005066 1.8e-75 287.0 326 55.8
Prupe.1G140300 Prunus persica HOM05D001137 ORTHO05D005066 2.6e-74 283.1 327 55.7
Ciclev10004439m.g Citrus clementina HOM05D001137 ORTHO05D005066 4.9e-73 278.9 329 55.6
Sabra08G0155800 Salix brachista HOM05D001137 ORTHO05D005066 3.2e-72 276.2 323 54.2
FvH4_4g17510 Fragaria vesca HOM05D001137 ORTHO05D005066 1.2e-71 274.2 325 55.1
Rhsim04G0218100 Rhododendron simsii HOM05D001137 ORTHO05D005066 1.6e-71 273.9 327 53.2
FAN12G2022 Fragaria x ananassa HOM05D001137 ORTHO05D005066 2.1e-71 273.5 321 55.1
MSTRG.3938 Avicennia marina HOM05D001137 ORTHO05D005066 4.6e-71 272.3 324 53.4
FAN07G1649 Fragaria x ananassa HOM05D001137 ORTHO05D005066 6.0e-71 271.9 325 54.8
Lsat_1_v5_gn_5_157341 Lactuca sativa HOM05D001137 ORTHO05D005066 6.0e-71 271.9 276 58.3
Potri.008G214900 Populus trichocarpa HOM05D001137 ORTHO05D005066 6.0e-71 271.9 326 54.0
MD16G1173400 Malus domestica HOM05D001137 ORTHO05D005066 1.0e-70 271.2 326 54.3
CANSAT78G1005 Cannabis sativa HOM05D001137 ORTHO05D005066 1.8e-70 270.4 328 55.8
CiPaw.01G151600 Carya illinoinensis HOM05D001137 ORTHO05D005066 1.8e-70 270.4 329 52.9
FAN17G0634 Fragaria x ananassa HOM05D001137 ORTHO05D005066 1.8e-70 270.4 323 54.8
CARHR194430 Cardamine hirsuta HOM05D001137 ORTHO05D005066 3.9e-70 269.2 323 53.9
Sp6g25740 Schrenkiella parvula HOM05D001137 ORTHO05D005066 3.9e-70 269.2 329 53.8
GSVIVG01017784001 Vitis vinifera HOM05D001137 ORTHO05D005066 5.1e-70 268.9 328 52.7
Lalb_Chr18g0055631 Lupinus albus HOM05D001137 ORTHO05D005066 6.7e-70 268.5 327 53.8
Thhalv10012828m.g Eutrema salsugineum HOM05D001137 ORTHO05D005066 1.1e-69 267.7 329 53.2
Potri.010G022000 Populus trichocarpa HOM05D001137 ORTHO05D005066 1.5e-69 267.3 325 53.5
Actinidia01942 Actinidia chinensis HOM05D001137 ORTHO05D005066 3.3e-69 266.2 327 53.5
QL06p007709 Quercus lobata HOM05D001137 ORTHO05D005066 3.3e-69 266.2 325 52.9
THA.LOC104802721 Tarenaya hassleriana HOM05D001137 ORTHO05D005066 3.3e-69 266.2 316 52.8
TAR365G1163 Trochodendron aralioides HOM05D001137 ORTHO05D005066 7.4e-69 265.0 329 51.4
SGA_v2.0_scaffold86G26927 Striga asiatica HOM05D001137 ORTHO05D005066 3.7e-68 262.7 323 53.3
Gohir.A10G161500 Gossypium hirsutum HOM05D001137 ORTHO05D005066 4.8e-68 262.3 328 52.7
arahy.Tifrunner.gnm1.ann1.HMK9CN Arachis hypogaea HOM05D001137 ORTHO05D005066 8.1e-68 261.5 326 51.5
Actinidia40240 Actinidia chinensis HOM05D001137 ORTHO05D005066 1.1e-67 261.2 327 52.6
arahy.Tifrunner.gnm1.ann1.GKEN9S Arachis hypogaea HOM05D001137 ORTHO05D005066 1.8e-67 260.4 326 51.5
Nn3g21353 Nelumbo nucifera HOM05D001137 ORTHO05D005066 6.9e-67 258.5 323 52.9
TWI73G0988 Tripterygium wilfordii HOM05D001137 ORTHO05D005066 1.5e-66 257.3 330 52.1
Manes.15G015400 Manihot esculenta HOM05D001137 ORTHO05D005066 3.4e-66 256.1 326 51.8
MBI18_g01977_MAGBIO Magnolia biondii HOM05D001137 ORTHO05D005066 5.8e-66 255.4 341 50.4
ECA248G1543 Erigeron canadensis HOM05D001137 ORTHO05D005066 7.6e-66 255.0 311 54.7
Thecc.04G279600 Theobroma cacao HOM05D001137 ORTHO05D005066 7.6e-66 255.0 333 52.0
EL10Ac7g16750 Beta vulgaris HOM05D001137 ORTHO05D005066 1.0e-65 254.6 323 50.5
Gorai.011G187500 Gossypium raimondii HOM05D001137 ORTHO05D005066 1.0e-65 254.6 329 52.0
Gohir.D10G168000 Gossypium hirsutum HOM05D001137 ORTHO05D005066 2.2e-65 253.4 329 52.3
COL.COLO4_13912 Corchorus olitorius HOM05D001137 ORTHO05D005066 1.4e-64 250.8 326 51.5
AT5G18590 Arabidopsis thaliana HOM05D001137 ORTHO05D005066 3.2e-64 249.6 330 50.6
AUR62031245 Chenopodium quinoa HOM05D001137 ORTHO05D005066 3.2e-64 249.6 324 51.2
PGR004G0465 Punica granatum HOM05D001137 ORTHO05D005066 3.2e-64 249.6 330 51.8
DCAR_030541 Daucus carota HOM05D001137 ORTHO05D005066 9.3e-64 248.1 325 51.7
MELO3C006622.2 Cucumis melo HOM05D001137 ORTHO05D005066 2.1e-63 246.9 288 53.5
BraA10t44162Z Brassica rapa HOM05D001137 ORTHO05D005066 2.7e-63 246.5 328 51.2
Carub.0006s1687 Capsella rubella HOM05D001137 ORTHO05D005066 2.7e-63 246.5 331 50.5
AL6G29860 Arabidopsis lyrata HOM05D001137 ORTHO05D005066 3.5e-63 246.1 330 50.6
Lj6g0014210 Lotus japonicus HOM05D001137 ORTHO05D005066 2.3e-62 243.4 326 49.4
A10p20970 Brassica napus HOM05D001137 ORTHO05D005066 3.9e-62 242.7 327 49.8
CsaV3_3G014290 Cucumis sativus L. HOM05D001137 ORTHO05D005066 3.9e-62 242.7 297 51.5
HanXRQChr13g0388221 Helianthus annuus HOM05D001137 ORTHO05D005066 6.7e-62 241.9 303 53.1
Manes.03G192200 Manihot esculenta HOM05D001137 ORTHO05D005066 1.5e-61 240.7 327 50.8
BcaB08g36660 Brassica carinata HOM05D001137 ORTHO05D005066 7.4e-61 238.4 328 50.3
Hund24915 Selenicereus undatus HOM05D001137 ORTHO05D005066 1.6e-60 237.3 325 47.1
BcaC04g18664 Brassica carinata HOM05D001137 ORTHO05D005066 2.8e-60 236.5 327 50.2
C09p57890 Brassica napus HOM05D001137 ORTHO05D005066 2.8e-60 236.5 327 50.2
BolC9t58657H Brassica oleracea HOM05D001137 ORTHO05D005066 2.8e-60 236.5 327 50.2
Phvul.003G102100 Phaseolus vulgaris HOM05D001137 ORTHO05D005066 2.8e-60 236.5 333 48.9
Phvul.006G162800 Phaseolus vulgaris HOM05D001137 ORTHO05D005066 3.7e-60 236.1 327 49.8
TPR.G1509 Trifolium pratense HOM05D001137 ORTHO05D005066 6.2e-60 235.3 310 50.0
Ah.08g211130 Amaranthus hybridus HOM05D001137 ORTHO05D005066 8.2e-60 235.0 323 49.2
AUR62027452 Chenopodium quinoa HOM05D001137 ORTHO05D005066 1.1e-59 234.6 320 48.4
Sed0020296 Sechium edule HOM05D001137 ORTHO05D005066 1.1e-59 234.6 296 50.7
Duzib151G0891 Durio zibethinus HOM05D001137 ORTHO05D005066 2.4e-59 233.4 329 49.8
Medtr4g119100 Medicago truncatula HOM05D001137 ORTHO05D005066 3.1e-59 233.0 334 50.0
TPR.G14624 Trifolium pratense HOM05D001137 ORTHO05D005066 5.3e-59 232.3 328 50.0
Glyma.17G024000 Glycine max HOM05D001137 ORTHO05D005066 6.9e-59 231.9 326 49.1
VMungo1215G0971 Vigna mungo HOM05D001137 ORTHO05D005066 6.9e-59 231.9 333 48.6
Sed0010501 Sechium edule HOM05D001137 ORTHO05D005066 2.0e-58 230.3 288 51.0
Ca_21530_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 4.5e-58 229.2 329 49.5
Ca_21539_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 4.5e-58 229.2 329 49.5
Gorai.006G264600 Gossypium raimondii HOM05D001137 ORTHO05D005066 1.7e-57 227.3 330 48.5
Lj4g0021111 Lotus japonicus HOM05D001137 ORTHO05D005066 2.9e-57 226.5 322 49.7
Duzib212G0615 Durio zibethinus HOM05D001137 ORTHO05D005066 3.8e-57 226.1 329 49.2
Atru.chr4.2781 Acer truncatum HOM05D001137 ORTHO05D005066 6.5e-57 225.3 305 50.5
Glyma.13G216400 Glycine max HOM05D001137 ORTHO05D005066 1.4e-56 224.2 307 49.8
Gohir.D09G241100 Gossypium hirsutum HOM05D001137 ORTHO05D005066 1.4e-56 224.2 329 48.6
VMungo0375G0001 Vigna mungo HOM05D001137 ORTHO05D005066 1.4e-56 224.2 326 48.8
Psat1g187920 Pisum sativum HOM05D001137 ORTHO05D005066 2.5e-56 223.4 314 49.7
Gohir.A09G240400 Gossypium hirsutum HOM05D001137 ORTHO05D005066 5.5e-56 222.2 330 49.1
CDE11G0818 Ceratophyllum demersum HOM05D001137 ORTHO05D005066 1.6e-55 220.7 294 49.0
HanXRQChr01g0008171 Helianthus annuus HOM05D001137 ORTHO05D005066 1.6e-55 220.7 319 49.2
PSO210G1694 Papaver somniferum HOM05D001137 ORTHO05D005066 2.7e-55 219.9 305 47.2
Sc13g0003550 Simmondsia chinensis HOM05D001137 ORTHO05D005066 6.1e-55 218.8 325 48.3
PSO170G4147 Papaver somniferum HOM05D001137 ORTHO05D005066 7.9e-55 218.4 303 47.9
CSS0024935 Camellia sinensis var. sinensis HOM05D001137 ORTHO05D005066 5.7e-53 212.2 255 56.1
Glyma.07G250400 Glycine max HOM05D001137 ORTHO05D005066 7.4e-53 211.8 330 47.6
Medtr2g019860 Medicago truncatula HOM05D001137 ORTHO05D005066 7.4e-53 211.8 311 47.9
Aa31LG11G11030 Aethionema arabicum HOM05D001137 ORTHO05D005066 4.5e-50 202.6 323 44.9
ATR0706G140 Amborella trichopoda HOM05D001137 ORTHO05D005066 7.7e-50 201.8 328 44.8
TWI09G0222 Tripterygium wilfordii HOM05D001137 ORTHO05D005066 1.3e-49 201.1 282 48.6
HPP92_015154 Vanilla planifolia HOM05D001137 ORTHO05D005066 5.5e-48 195.7 298 46.3
Ca_21531_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 1.6e-47 194.1 317 42.9
Ca_21540_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 1.6e-47 194.1 317 42.9
unitig_748.g8584 Utricularia gibba HOM05D001137 ORTHO05D005066 3.6e-47 193.0 321 42.7
arahy.Tifrunner.gnm1.ann1.S97PWN Arachis hypogaea HOM05D001137 ORTHO05D005066 1.0e-46 191.4 290 47.2
arahy.Tifrunner.gnm1.ann1.SGL9NF Arachis hypogaea HOM05D001137 ORTHO05D005066 1.0e-46 191.4 290 47.6
ClCG05G005910 Citrullus lanatus HOM05D001137 ORTHO05D005066 1.0e-46 191.4 274 46.7
Dinv38312 Davidia involucrata HOM05D001137 ORTHO05D005066 4.3e-45 186.0 106 90.6
CDE05G0074 Ceratophyllum demersum HOM05D001137 ORTHO05D005066 2.0e-42 177.2 274 45.3
Aqoxy2G03075 Aquilegia oxysepala HOM05D001137 ORTHO05D005066 3.2e-40 169.9 302 42.7
Cpa.g.sc1214.1 Carica papaya HOM05D001137 ORTHO05D005066 3.2e-40 169.9 286 45.1
CSS0028405 Camellia sinensis var. sinensis HOM05D001137 ORTHO05D005066 1.5e-37 161.0 240 47.9
Glyma.15G096200 Glycine max HOM05D001137 ORTHO05D005066 8.2e-36 155.2 285 42.8
SEGI_27339 Sequoiadendron giganteum HOM05D001137 ORTHO05D005066 8.2e-36 155.2 146 56.8
ClCG00G003670 Citrullus lanatus HOM05D001137 ORTHO05D005066 4.1e-35 152.9 249 43.8
Zm00001eb410440 Zea mays HOM05D001137 ORTHO05D005066 1.3e-33 147.9 283 41.0
Os12g0538800 Oryza sativa ssp. japonica HOM05D001137 ORTHO05D005066 6.3e-28 129.0 284 38.4
CSS0008512 Camellia sinensis var. sinensis HOM05D001137 ORTHO05D005066 3.1e-27 126.7 192 46.9
MD13G1171900 Malus domestica HOM05D001137 ORTHO05D005066 2.6e-26 123.6 315 35.6
Dinv38313 Davidia involucrata HOM05D001137 ORTHO05D005066 5.5e-24 115.9 115 63.5
AagrBONN_evm.TU.Sc2ySwM_344.1606 Anthoceros agrestis HOM05D001137 ORTHO05D005066 6.8e-22 109.0 140 47.9
arahy.Tifrunner.gnm1.ann1.CD5QST Arachis hypogaea HOM05D001137 ORTHO05D005066 3.7e-20 103.2 71 77.5
arahy.Tifrunner.gnm1.ann1.8I1ERN Arachis hypogaea HOM05D001137 ORTHO05D005066 1.8e-19 100.9 141 46.8
Pp3c11_2880 Physcomitrium patens HOM05D001137 ORTHO05D005066 7.7e-18 95.5 75 62.7
FAN12G2086 Fragaria x ananassa HOM05D001137 ORTHO05D005066 1.3e-17 94.7 99 59.6
BolC2t06908H Brassica oleracea HOM05D000116 ORTHO05D000133 4.2e-16 89.7 76 64.5
SMO141G0291 Selaginella moellendorffii HOM05D001137 ORTHO05D005066 4.2e-16 89.7 55 76.4
Zm00001eb165710 Zea mays HOM05D001137 ORTHO05D005066 1.2e-15 88.2 240 34.6
Pp3c1_4300 Physcomitrium patens HOM05D001137 ORTHO05D005066 2.1e-15 87.4 64 64.1
Eucgr.H03862 Eucalyptus grandis HOM05D001137 ORTHO05D005066 2.7e-15 87.0 82 61.0
Dinv44410 Davidia involucrata HOM05D001137 ORTHO05D005066 8.0e-15 85.5 232 37.9
Mapoly0008s0142 Marchantia polymorpha HOM05D001137 ORTHO05D005066 1.4e-14 84.7 65 63.1
Psat4g027640 Pisum sativum HOM05D001137 ORTHO05D005066 2.0e-13 80.9 194 38.7
Pp3c23_20210 Physcomitrium patens HOM05D001137 ORTHO05D005066 3.4e-13 80.1 78 48.7
Pp3c7_20910 Physcomitrium patens HOM05D001137 ORTHO05D005066 1.3e-12 78.2 144 36.1
BcaC03g13611 Brassica carinata HOM05D001137 ORTHO05D015478 1.7e-12 77.8 91 45.1
Ca_00560_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 1.4e-11 74.7 180 35.6
TAR362G1170 Trochodendron aralioides HOM05D001137 ORTHO05D005066 1.2e-10 71.6 104 46.2
PGSC0003DMG400019543 Solanum tuberosum HOM05D001137 ORTHO05D005066 3.5e-10 70.1 38 86.8
C02p10070 Brassica napus HOM05D001137 ORTHO05D005066 7.7e-10 68.9 48 72.9
AagrBONN_evm.TU.Sc2ySwM_117.4107 Anthoceros agrestis HOM05D001137 ORTHO05D001967 5.2e-06 56.2 112 33.0


User provided reference genes

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