Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 3.1e-47 191.4 94 100.0
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 1.5e-25 119.4 97 61.9
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.9e-25 119.0 98 61.2
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.3e-24 116.3 80 71.2
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 7.6e-22 107.1 99 56.6
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 3.2e-20 101.7 91 48.4
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 1.2e-19 99.8 97 49.5
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 6.7e-18 94.0 85 54.1
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 8.7e-18 93.6 95 50.5
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 8.7e-18 93.6 98 51.0
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 1.9e-17 92.4 95 49.5
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.9e-17 92.4 95 49.5
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 3.3e-17 91.7 85 51.8
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 7.4e-17 90.5 88 47.7
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 7.4e-17 90.5 97 45.4
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 9.7e-17 90.1 94 42.6
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 9.7e-17 90.1 94 42.6
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 3.7e-16 88.2 82 47.6
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 3.7e-16 88.2 82 47.6
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 3.7e-16 88.2 82 51.2
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 3.7e-16 88.2 88 47.7
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 3.7e-16 88.2 86 46.5
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 3.7e-16 88.2 83 50.6
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.8e-15 85.9 83 50.6
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 1.8e-15 85.9 95 46.3
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 2.4e-15 85.5 97 45.4
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.1e-15 85.1 91 45.1
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 4.1e-15 84.7 97 44.3
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 4.1e-15 84.7 92 45.7
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 4.1e-15 84.7 92 45.7
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 4.1e-15 84.7 80 46.2
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 5.3e-15 84.3 95 45.3
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 6.9e-15 84.0 83 48.2
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 6.9e-15 84.0 81 45.7
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 1.2e-14 83.2 95 45.3
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.2e-14 83.2 92 45.7
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 1.2e-14 83.2 94 42.6
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.2e-14 83.2 95 46.3
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 1.5e-14 82.8 103 40.8
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 1.5e-14 82.8 92 44.6
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.5e-14 82.8 91 44.0
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 1.5e-14 82.8 91 44.0
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 1.5e-14 82.8 94 43.6
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.0e-14 82.4 95 40.0
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.0e-14 82.4 93 47.3
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 2.0e-14 82.4 93 47.3
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 2.6e-14 82.0 96 45.8
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.6e-14 82.0 99 42.4
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.6e-14 82.0 99 42.4
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 2.6e-14 82.0 99 42.4
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 3.4e-14 81.6 94 46.8
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 4.5e-14 81.3 97 43.3
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.5e-14 81.3 60 53.3
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 4.5e-14 81.3 96 43.8
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 4.5e-14 81.3 96 43.8
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 5.9e-14 80.9 96 43.8
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.7e-14 80.5 90 45.6
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 7.7e-14 80.5 93 45.2
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 7.7e-14 80.5 93 45.2
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 1.0e-13 80.1 90 42.2
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 1.0e-13 80.1 90 42.2
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 1.0e-13 80.1 98 44.9
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 2.2e-13 79.0 91 41.8
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 2.9e-13 78.6 94 40.4
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 2.9e-13 78.6 93 44.1
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.9e-13 78.6 95 44.2
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 2.9e-13 78.6 94 46.8
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 3.8e-13 78.2 88 44.3
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 3.8e-13 78.2 103 41.7
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 3.8e-13 78.2 97 45.4
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 3.8e-13 78.2 95 38.9
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 6.5e-13 77.4 86 44.2
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.5e-13 77.4 88 44.3
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 6.5e-13 77.4 93 44.1
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 6.5e-13 77.4 95 42.1
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 8.5e-13 77.0 62 51.6
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 8.5e-13 77.0 91 37.4
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.1e-12 76.6 87 43.7
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 1.1e-12 76.6 84 42.9
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.1e-12 76.6 53 60.4
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 1.1e-12 76.6 90 41.1
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 1.1e-12 76.6 79 43.0
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 1.1e-12 76.6 92 43.5
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.4e-12 76.3 91 46.2
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.4e-12 76.3 95 38.9
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 1.9e-12 75.9 81 43.2
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 1.9e-12 75.9 96 42.7
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 2.5e-12 75.5 50 58.0
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.5e-12 75.5 85 44.7
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.5e-12 75.5 85 44.7
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 2.5e-12 75.5 93 41.9
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 4.2e-12 74.7 82 45.1
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 4.2e-12 74.7 56 55.4
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 4.2e-12 74.7 93 43.0
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 7.2e-12 73.9 69 49.3
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.2e-12 73.9 95 42.1
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 7.2e-12 73.9 95 37.9
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 9.4e-12 73.6 86 43.0
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 9.4e-12 73.6 86 40.7
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 9.4e-12 73.6 80 45.0
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 1.2e-11 73.2 95 42.1
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 1.6e-11 72.8 96 41.7
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.6e-11 72.8 83 43.4
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 2.1e-11 72.4 95 41.1
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 2.1e-11 72.4 94 41.5
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.1e-11 72.4 94 38.3
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 2.7e-11 72.0 90 41.1
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.7e-11 72.0 87 41.4
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 2.7e-11 72.0 86 44.2
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 2.7e-11 72.0 93 38.7
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 4.6e-11 71.2 91 42.9
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 4.6e-11 71.2 94 38.3
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 4.6e-11 71.2 90 35.6
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 4.6e-11 71.2 96 41.7
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 6.1e-11 70.9 79 44.3
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 6.1e-11 70.9 91 40.7
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.1e-11 70.9 79 43.0
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 6.1e-11 70.9 86 43.0
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.9e-11 70.5 100 40.0
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.0e-10 70.1 77 44.2
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.0e-10 70.1 90 40.0
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.0e-10 70.1 79 44.3
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 1.8e-10 69.3 91 44.0
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 1.8e-10 69.3 71 40.8
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.0e-10 68.6 82 35.4
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 3.9e-10 68.2 69 37.7
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.9e-10 68.2 119 34.5
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.9e-10 68.2 93 36.6
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 3.9e-10 68.2 62 41.9
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.1e-10 67.8 90 35.6
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 5.1e-10 67.8 88 36.4
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 6.7e-10 67.4 87 42.5
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 8.8e-10 67.0 50 52.0
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 8.8e-10 67.0 91 36.3
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 8.8e-10 67.0 80 41.2
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 1.1e-09 66.6 80 40.0
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 1.1e-09 66.6 91 37.4
DCAR_028776 Daucus carota HOM05D003712 ORTHO05D004368 1.5e-09 66.2 80 38.8
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.5e-09 66.2 53 50.9
FvH4_5g02870 Fragaria vesca HOM05D003712 ORTHO05D004368 2.0e-09 65.9 94 43.6
FAN18G2182 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.0e-09 65.9 94 43.6
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 2.0e-09 65.9 94 37.2
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 2.5e-09 65.5 55 47.3
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.5e-09 65.5 81 45.7
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 3.3e-09 65.1 54 50.0
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 4.3e-09 64.7 88 38.6
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 4.3e-09 64.7 83 41.0
HanXRQChr16g0517561 Helianthus annuus HOM05D003712 ORTHO05D004368 4.3e-09 64.7 88 37.5
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 7.4e-09 63.9 94 37.2
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 7.4e-09 63.9 79 39.2
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 9.7e-09 63.5 93 35.5
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.3e-08 63.2 93 44.1
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 1.3e-08 63.2 49 49.0
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 1.3e-08 63.2 49 49.0
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 1.3e-08 63.2 53 45.3
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 1.7e-08 62.8 93 43.0
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 1.7e-08 62.8 80 40.0
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 2.2e-08 62.4 55 45.5
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 3.7e-08 61.6 87 39.1
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.7e-08 61.6 80 33.8
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 4.8e-08 61.2 49 49.0
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.8e-08 61.2 52 50.0
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.8e-08 61.2 80 33.8
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.3e-08 60.8 93 41.9
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 6.3e-08 60.8 83 38.6
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 1.1e-07 60.1 83 39.8
Solyc07g054710.2 Solanum lycopersicum HOM05D003712 ORTHO05D004368 1.1e-07 60.1 94 33.0
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 1.4e-07 59.7 90 32.2
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 1.4e-07 59.7 81 37.0
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 3.1e-07 58.5 44 54.5
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 3.1e-07 58.5 93 36.6
Nitab4.5_0004216g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.3e-07 57.8 43 53.5
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 9.1e-07 57.0 74 35.1
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 9.1e-07 57.0 85 37.6
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 1.2e-06 56.6 86 38.4
FAN18G0797 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.5e-06 56.2 92 40.2
Lj4g0012776 Lotus japonicus HOM05D003712 ORTHO05D004368 1.5e-06 56.2 39 51.3
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 2.0e-06 55.8 82 34.1
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 2.6e-06 55.5 92 37.0
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 2.6e-06 55.5 93 31.2


User provided reference genes

Program Settings